<?xml version="1.0" ?>
<wwPDB-validation-information xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="http://wwpdb.org/validation/schema/wwpdb_validation_v6.03.xsd">
	<Entry percentilebins="all,2.25,xray" attemptedValidationSteps="molprobity,validation-pack,xtriage,eds,mogul,buster-report,percentiles,writexml" PDB-deposition-date="2024-02-09" PDB-revision-date="2024-09-11" PDB-revision-number="1" protein-DNA-RNA-entities="1" PDB-resolution="2.25" PDB-resolution-low="41.00" PDB-R="0.1980" PDB-Rfree="0.2140" pdbid="8YAN" num-H-reduce="344" clashscore="0.97" RestypesNotcheckedForBondAngleGeometry="A1LYL" RNAsuiteness="0.64" bonds_rmsz="0.18" num_bonds_rmsz="713" angles_rmsz="0.69" num_angles_rmsz="1107" xtriage_input_columns="F_meas_au,F_meas_sigma_au" WilsonBaniso="[86.381,86.381,79.551,0.000,0.000,0.000]" TransNCS="The largest off-origin peak in the Patterson function is 5.77% of the height of the origin peak. No significant pseudotranslation is detected." DataAnisotropy="0.081" centric_outliers="0" TwinL="0.495" IoverSigma="1.43(2.24A)" acentric_outliers="3" WilsonBestimate="83.097" TwinL2="0.330" numMillerIndices="11412" CCP4version="9.0.002 (Gargrove)" density-fitnessVersion="1.0.11" DCC_R="0.1981" DCC_Rfree="0.2140" DCC_refinement_program="PHENIX" B_factor_type="FULL" EDS_resolution="2.25" EDS_resolution_low="41.00" percent-free-reflections="5.00" num-free-reflections="10841" bulk_solvent_k="0.385" bulk_solvent_b="99.745" EDS_R="0.3042" Fo_Fc_correlation="0.916" DataCompleteness="99.95" ligands-for-buster-report="yes" absolute-percentile-clashscore="95.9" numPDBids-absolute-percentile-clashscore="180529" relative-percentile-clashscore="97.3" numPDBids-relative-percentile-clashscore="1919" low-resol-relative-percentile-clashscore="2.26" high-resol-relative-percentile-clashscore="2.26" absolute-percentile-DCC_Rfree="76.6" numPDBids-absolute-percentile-DCC_Rfree="164625" relative-percentile-DCC_Rfree="91.7" numPDBids-relative-percentile-DCC_Rfree="1763" low-resol-relative-percentile-DCC_Rfree="2.26" high-resol-relative-percentile-DCC_Rfree="2.26" absolute-percentile-RNAsuiteness="70.8" numPDBids-absolute-percentile-RNAsuiteness="3690" relative-percentile-RNAsuiteness="65.9" numPDBids-relative-percentile-RNAsuiteness="1118" low-resol-relative-percentile-RNAsuiteness="2.6" high-resol-relative-percentile-RNAsuiteness="1.92" XMLcreationDate="Sep  2, 2024 -- 02:09 PM JST"/>
	<ModelledSubgroup num-H-reduce="12" RNAsuite="NotAvailable" RNAscore="0.00" model="1" chain="A" resnum="1" said="A" ent="1" seq="1" icode=" " resname="C" altcode=" "/>
	<ModelledSubgroup num-H-reduce="10" RNAsuite="Rotameric" RNAscore="0.92" model="1" chain="A" resnum="2" said="A" ent="1" seq="2" icode=" " resname="U" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.96" model="1" chain="A" resnum="3" said="A" ent="1" seq="3" icode=" " resname="G" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.56" model="1" chain="A" resnum="4" said="A" ent="1" seq="4" icode=" " resname="G" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.85" model="1" chain="A" resnum="5" said="A" ent="1" seq="5" icode=" " resname="G" altcode=" "/>
	<ModelledSubgroup num-H-reduce="10" RNAsuite="Rotameric" RNAscore="0.74" model="1" chain="A" resnum="6" said="A" ent="1" seq="6" icode=" " resname="U" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.65" model="1" chain="A" resnum="7" said="A" ent="1" seq="7" icode=" " resname="C" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.75" model="1" chain="A" resnum="8" said="A" ent="1" seq="8" icode=" " resname="G" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.90" model="1" chain="A" resnum="9" said="A" ent="1" seq="9" icode=" " resname="C" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.83" model="1" chain="A" resnum="10" said="A" ent="1" seq="10" icode=" " resname="A" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.71" model="1" chain="A" resnum="11" said="A" ent="1" seq="11" icode=" " resname="G" altcode=" "/>
	<ModelledSubgroup num-H-reduce="10" RNAsuite="Rotameric" RNAscore="0.01" model="1" chain="A" resnum="12" said="A" ent="1" seq="12" icode=" " resname="U" altcode=" "/>
	<ModelledSubgroup num-H-reduce="9" model="1" chain="A" resnum="13" said="A" ent="1" seq="13" icode=" " resname="N" altcode=" "/>
	<ModelledSubgroup num-H-reduce="8" model="1" chain="A" resnum="15" said="A" ent="1" seq="15" icode=" " resname="N" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.37" model="1" chain="A" resnum="16" said="A" ent="1" seq="16" icode=" " resname="C" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.96" model="1" chain="A" resnum="17" said="A" ent="1" seq="17" icode=" " resname="C" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.79" model="1" chain="A" resnum="18" said="A" ent="1" seq="18" icode=" " resname="C" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.47" model="1" chain="A" resnum="19" said="A" ent="1" seq="19" icode=" " resname="A" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.85" model="1" chain="A" resnum="20" said="A" ent="1" seq="20" icode=" " resname="G" altcode=" "/>
	<ModelledSubgroup num-H-reduce="10" RNAsuite="Rotameric" RNAscore="0.68" model="1" chain="A" resnum="21" said="A" ent="1" seq="21" icode=" " resname="U" altcode=" "/>
	<ModelledSubgroup num-H-reduce="10" RNAsuite="Rotameric" RNAscore="0.64" model="1" chain="A" resnum="22" said="A" ent="1" seq="22" icode=" " resname="U" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.85" model="1" chain="A" resnum="23" said="A" ent="1" seq="23" icode=" " resname="A" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.61" model="1" chain="A" resnum="24" said="A" ent="1" seq="24" icode=" " resname="A" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.78" model="1" chain="A" resnum="25" said="A" ent="1" seq="25" icode=" " resname="C" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.07" model="1" chain="A" resnum="26" said="A" ent="1" seq="26" icode=" " resname="A" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.49" model="1" chain="A" resnum="27" said="A" ent="1" seq="27" icode=" " resname="A" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.02" model="1" chain="A" resnum="28" said="A" ent="1" seq="28" icode=" " resname="A" altcode=" ">
		<clash atom="O2'" dist="2.04" clashmag="0.41" cid="0"/>
	</ModelledSubgroup>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.41" model="1" chain="A" resnum="29" said="A" ent="1" seq="29" icode=" " resname="A" altcode=" ">
		<clash atom="H8" dist="2.04" clashmag="0.41" cid="0"/>
	</ModelledSubgroup>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.90" model="1" chain="A" resnum="30" said="A" ent="1" seq="30" icode=" " resname="C" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.78" model="1" chain="A" resnum="31" said="A" ent="1" seq="31" icode=" " resname="A" altcode=" "/>
	<ModelledSubgroup num-H-reduce="11" RNAsuite="Rotameric" RNAscore="0.67" model="1" chain="A" resnum="32" said="A" ent="1" seq="32" icode=" " resname="A" altcode=" "/>
	<ModelledSubgroup num-H-reduce="12" RNAsuite="Rotameric" RNAscore="0.39" model="1" chain="A" resnum="33" said="A" ent="1" seq="33" icode=" " resname="G" altcode=" "/>
	<ModelledSubgroup mogul_bonds_rmsz="1.34" mogul_rmsz_numbonds="22" mogul_angles_rmsz="1.09" mogul_rmsz_numangles="26" model="1" chain="A" resnum="101" said="B" ent="2" seq="." icode=" " resname="A1LYL" altcode=" ">
		<mog-bond-outlier atoms="C01,C02" numobs="50" mean="1.50" stdev="0.01" mindiff="0.01" Zscore="3.79" obsval="1.53"/>
		<mog-bond-outlier atoms="C18,C19" numobs="340" mean="1.36" stdev="0.01" mindiff="0.00" Zscore="2.50" obsval="1.40"/>
		<mog-angle-outlier atoms="C18,C19,N20" numobs="204" mean="123.81" stdev="0.99" mindiff="0.06" Zscore="-3.22" obsval="120.63"/>
		<mog-angle-outlier atoms="C19,N20,C02" numobs="139" mean="118.33" stdev="1.21" mindiff="0.36" Zscore="2.20" obsval="121.00"/>
		<mog-torsion-outlier atoms="O09,C10,C11,N12" numobs="3793" mean="40.53" stdev="17.09" mindiff="0.16" local_density="1.13" obsval="-100.15"/>
		<mog-torsion-outlier atoms="C11,C10,O09,C08" numobs="2008" mean="45.30" stdev="9.12" mindiff="1.20" local_density="0.75" obsval="-123.70"/>
	</ModelledSubgroup>
	<ModelledEntityInstance bonds_rmsz="0.18" num_bonds_rmsz="713" angles_rmsz="0.69" num_angles_rmsz="1107" said="A" model="1" chain="A" ent="1"/>
	<programs>
		<program name="validation-pipeline" version="2.38.2" properties="percentilebins,PDB-Rfree,protein-DNA-RNA-entities,PDB-deposition-date,PDB-revision-date,PDB-resolution-low,pdbid,PDB-R,PDB-revision-number,PDB-resolution,XMLcreationDate,attemptedValidationSteps"/>
		<program name="molprobity" version="4.02b-467" properties="angle-outlier,clash,bond-outlier,RNAsuite,RNAscore,num_bonds_rmsz,num_angles_rmsz,clashscore,RestypesNotcheckedForBondAngleGeometry,angles_rmsz,num-H-reduce,bonds_rmsz,RNAsuiteness"/>
		<program name="xtriage" version="1.13" properties="centric_outliers,DataAnisotropy,acentric_outliers,TwinL2,TwinL,xtriage_input_columns,TransNCS,IoverSigma,WilsonBaniso,WilsonBestimate,numMillerIndices"/>
		<program name="eds" version="3.0" properties="Fo_Fc_correlation,CCP4version,EDS_R,EDS_resolution,density-fitnessVersion,bulk_solvent_k,EDS_resolution_low,num-free-reflections,DataCompleteness,percent-free-reflections,bulk_solvent_b"/>
		<program name="dcc" version="&quot;2.27  (2023-04-10)&quot;" properties="DCC_Rfree,B_factor_type,DCC_R,DCC_refinement_program"/>
		<program name="mogul" version="1.8.5 (274361), CSD as541be (2020)" properties="mogul_bonds_rmsz,mogul_rmsz_numbonds,mogul-angle-outlier,mogul_angles_rmsz,mogul_rmsz_numangles,mogul-ring-outlier,mogul-torsion-outlier,mogul-bond-outlier"/>
		<program name="buster-report" version="1.1.7 (2018)" properties="ligands-for-buster-report"/>
		<program name="percentiles" version="20231227.v01 (using entries in the PDB archive December 27th 2023)" properties="low-resol-relative-percentile-RNAsuiteness,low-resol-relative-percentile-DCC_Rfree,low-resol-relative-percentile-clashscore,numPDBids-relative-percentile-clashscore,numPDBids-relative-percentile-DCC_Rfree,high-resol-relative-percentile-RNAsuiteness,absolute-percentile-clashscore,relative-percentile-clashscore,relative-percentile-DCC_Rfree,relative-percentile-RNAsuiteness,high-resol-relative-percentile-clashscore,numPDBids-absolute-percentile-clashscore,high-resol-relative-percentile-DCC_Rfree,numPDBids-absolute-percentile-DCC_Rfree,absolute-percentile-RNAsuiteness,numPDBids-relative-percentile-RNAsuiteness,numPDBids-absolute-percentile-RNAsuiteness,absolute-percentile-DCC_Rfree"/>
	</programs>
</wwPDB-validation-information>
