6.34 1.299 9.333 7.766 A N GLY 209 ATOM A N GLY 1 1 1.00 1 N 7.74 1.226 9.520 9.201 A CA GLY 209 ATOM A CA GLY 1 1 1.00 1 C 5.21 2.254 8.775 10.046 A C GLY 209 ATOM A C GLY 1 1 1.00 1 C 5.06 3.084 8.034 9.513 A O GLY 209 ATOM A O GLY 1 1 1.00 1 O 9.29 1.322 10.466 9.393 A HA2 GLY 209 ATOM A HA2 GLY 1 1 1.00 1 H 9.29 0.346 9.246 9.503 A HA3 GLY 209 ATOM A HA3 GLY 1 1 1.00 1 H 5.20 2.178 8.969 11.369 A N PHE 210 ATOM A N PHE 1 2 1.00 1 N 4.08 3.038 8.259 12.318 A CA PHE 210 ATOM A CA PHE 1 2 1.00 1 C 4.84 2.908 6.758 12.059 A C PHE 210 ATOM A C PHE 1 2 1.00 1 C 6.53 1.793 6.228 11.974 A O PHE 210 ATOM A O PHE 1 2 1.00 1 O 5.13 2.579 8.606 13.765 A CB PHE 210 ATOM A CB PHE 1 2 1.00 1 C 4.23 3.406 7.962 14.866 A CG PHE 210 ATOM A CG PHE 1 2 1.00 1 C 4.05 3.204 6.641 15.209 A CD1 PHE 210 ATOM A CD1 PHE 1 2 1.00 1 C 5.65 4.383 8.687 15.556 A CD2 PHE 210 ATOM A CD2 PHE 1 2 1.00 1 C 4.62 3.996 6.036 16.183 A CE1 PHE 210 ATOM A CE1 PHE 1 2 1.00 1 C 5.17 5.170 8.085 16.540 A CE2 PHE 210 ATOM A CE2 PHE 1 2 1.00 1 C 4.86 4.971 6.774 16.849 A CZ PHE 210 ATOM A CZ PHE 1 2 1.00 1 C 6.24 1.629 9.515 11.743 A H PHE 210 ATOM A H PHE 1 2 1.00 1 H 4.89 3.963 8.527 12.201 A HA PHE 210 ATOM A HA PHE 1 2 1.00 1 H 6.15 2.631 9.567 13.884 A HB2 PHE 210 ATOM A HB2 PHE 1 2 1.00 1 H 6.15 1.662 8.312 13.878 A HB3 PHE 210 ATOM A HB3 PHE 1 2 1.00 1 H 4.87 2.567 6.138 14.753 A HD1 PHE 210 ATOM A HD1 PHE 1 2 1.00 1 H 6.78 4.533 9.577 15.332 A HD2 PHE 210 ATOM A HD2 PHE 1 2 1.00 1 H 5.54 3.855 5.144 16.407 A HE1 PHE 210 ATOM A HE1 PHE 1 2 1.00 1 H 6.21 5.819 8.578 16.987 A HE2 PHE 210 ATOM A HE2 PHE 1 2 1.00 1 H 5.84 5.480 6.374 17.517 A HZ PHE 210 ATOM A HZ PHE 1 2 1.00 1 H 4.15 4.057 6.074 11.901 A N GLY 211 ATOM A N GLY 1 3 1.00 1 N 5.49 4.063 4.655 11.602 A CA GLY 211 ATOM A CA GLY 1 3 1.00 1 C 5.27 3.817 4.304 10.145 A C GLY 211 ATOM A C GLY 1 3 1.00 1 C 9.58 3.770 3.117 9.802 A O GLY 211 ATOM A O GLY 1 3 1.00 1 O 4.99 4.841 6.422 11.964 A H GLY 211 ATOM A H GLY 1 3 1.00 1 H 6.59 4.922 4.284 11.857 A HA2 GLY 211 ATOM A HA2 GLY 1 3 1.00 1 H 6.59 3.378 4.219 12.133 A HA3 GLY 211 ATOM A HA3 GLY 1 3 1.00 1 H 5.48 3.676 5.301 9.278 A N GLY 212 ATOM A N GLY 1 4 1.00 1 N 4.54 3.359 5.124 7.872 A CA GLY 212 ATOM A CA GLY 1 4 1.00 1 C 3.41 4.088 6.112 6.979 A C GLY 212 ATOM A C GLY 1 4 1.00 1 C 5.40 5.250 6.443 7.260 A O GLY 212 ATOM A O GLY 1 4 1.00 1 O 6.57 3.765 6.128 9.496 A H GLY 212 ATOM A H GLY 1 4 1.00 1 H 5.45 3.602 4.226 7.597 A HA2 GLY 212 ATOM A HA2 GLY 1 4 1.00 1 H 5.45 2.405 5.238 7.740 A HA3 GLY 212 ATOM A HA3 GLY 1 4 1.00 1 H 3.03 3.459 6.560 5.885 A N ASN 213 ATOM A N ASN 1 5 1.00 1 N 3.99 4.153 7.340 4.850 A CA ASN 213 ATOM A CA ASN 1 5 1.00 1 C 3.53 3.507 8.710 4.626 A C ASN 213 ATOM A C ASN 1 5 1.00 1 C 4.17 2.287 8.879 4.773 A O ASN 213 ATOM A O ASN 1 5 1.00 1 O 5.11 4.169 6.581 3.509 A CB ASN 213 ATOM A CB ASN 1 5 1.00 1 C 6.10 4.749 5.200 3.645 A CG ASN 213 ATOM A CG ASN 1 5 1.00 1 C 6.66 5.958 5.046 3.802 A OD1 ASN 213 ATOM A OD1 ASN 1 5 1.00 1 O 7.27 3.890 4.185 3.637 A ND2 ASN 213 ATOM A ND2 ASN 1 5 1.00 1 N 3.63 2.627 6.424 5.718 A H ASN 213 ATOM A H ASN 1 5 1.00 1 H 4.79 5.072 7.483 5.125 A HA ASN 213 ATOM A HA ASN 1 5 1.00 1 H 6.13 3.260 6.495 3.181 A HB2 ASN 213 ATOM A HB2 ASN 1 5 1.00 1 H 6.13 4.709 7.074 2.871 A HB3 ASN 213 ATOM A HB3 ASN 1 5 1.00 1 H 8.72 4.177 3.378 3.712 A HD21 ASN 213 ATOM A HD21 ASN 1 5 1.00 1 H 8.72 3.047 4.336 3.556 A HD22 ASN 213 ATOM A HD22 ASN 1 5 1.00 1 H 4.80 4.358 9.670 4.223 A N ASP 214 ATOM A N ASP 1 6 1.00 1 N 4.36 3.958 11.027 3.846 A CA ASP 214 ATOM A CA ASP 1 6 1.00 1 C 3.19 4.581 11.359 2.476 A C ASP 214 ATOM A C ASP 1 6 1.00 1 C 3.80 5.813 11.414 2.339 A O ASP 214 ATOM A O ASP 1 6 1.00 1 O 9.87 4.353 12.027 4.941 A CB ASP 214 ATOM A CB ASP 1 6 1.00 1 C 10.41 3.631 11.761 6.292 A CG ASP 214 ATOM A CG ASP 1 6 1.00 1 C 12.48 4.094 10.909 7.082 A OD1 ASP 214 ATOM A OD1 ASP 1 6 1.00 1 O 16.66 2.588 12.397 6.561 A OD2 ASP 214 ATOM A OD2 ASP 1 6 1.00 1 O 5.76 5.206 9.546 4.161 A H ASP 214 ATOM A H ASP 1 6 1.00 1 H 5.24 2.993 11.056 3.750 A HA ASP 214 ATOM A HA ASP 1 6 1.00 1 H 11.85 5.308 11.967 5.094 A HB2 ASP 214 ATOM A HB2 ASP 1 6 1.00 1 H 11.85 4.120 12.923 4.649 A HB3 ASP 214 ATOM A HB3 ASP 1 6 1.00 1 H 2.88 3.716 11.537 1.453 A N ASN 215 ATOM A N ASN 1 7 1.00 1 N 2.64 4.106 11.647 0.040 A CA ASN 215 ATOM A CA ASN 1 7 1.00 1 C 2.74 3.682 13.014 -0.500 A C ASN 215 ATOM A C ASN 1 7 1.00 1 C 3.48 2.486 13.348 -0.485 A O ASN 215 ATOM A O ASN 1 7 1.00 1 O 4.49 3.404 10.536 -0.778 A CB ASN 215 ATOM A CB ASN 1 7 1.00 1 C 3.05 3.817 9.134 -0.341 A CG ASN 215 ATOM A CG ASN 1 7 1.00 1 C 3.85 5.018 8.785 -0.312 A OD1 ASN 215 ATOM A OD1 ASN 1 7 1.00 1 O 5.92 2.825 8.326 0.035 A ND2 ASN 215 ATOM A ND2 ASN 1 7 1.00 1 N 3.46 2.866 11.599 1.566 A H ASN 215 ATOM A H ASN 1 7 1.00 1 H 3.17 5.067 11.552 -0.052 A HA ASN 215 ATOM A HA ASN 1 7 1.00 1 H 5.39 2.444 10.617 -0.661 A HB2 ASN 215 ATOM A HB2 ASN 1 7 1.00 1 H 5.39 3.634 10.639 -1.714 A HB3 ASN 215 ATOM A HB3 ASN 1 7 1.00 1 H 7.10 2.997 7.523 0.292 A HD21 ASN 215 ATOM A HD21 ASN 1 7 1.00 1 H 7.10 2.012 8.607 0.021 A HD22 ASN 215 ATOM A HD22 ASN 1 7 1.00 1 H 4.64 4.657 13.798 -0.987 A N PHE 216 ATOM A N PHE 1 8 1.00 1 N 5.57 4.419 15.120 -1.574 A CA PHE 216 ATOM A CA PHE 1 8 1.00 1 C 5.56 4.837 15.124 -3.054 A C PHE 216 ATOM A C PHE 1 8 1.00 1 C 7.88 6.024 14.958 -3.367 A O PHE 216 ATOM A O PHE 1 8 1.00 1 O 5.52 5.158 16.214 -0.761 A CB PHE 216 ATOM A CB PHE 1 8 1.00 1 C 5.82 4.856 16.188 0.761 A CG PHE 216 ATOM A CG PHE 1 8 1.00 1 C 5.57 5.580 15.363 1.622 A CD1 PHE 216 ATOM A CD1 PHE 1 8 1.00 1 C 8.02 3.834 16.983 1.318 A CD2 PHE 216 ATOM A CD2 PHE 1 8 1.00 1 C 8.90 5.312 15.329 2.976 A CE1 PHE 216 ATOM A CE1 PHE 1 8 1.00 1 C 7.38 3.562 16.945 2.693 A CE2 PHE 216 ATOM A CE2 PHE 1 8 1.00 1 C 8.55 4.280 16.119 3.519 A CZ PHE 216 ATOM A CZ PHE 1 8 1.00 1 C 5.57 5.487 13.575 -0.986 A H PHE 216 ATOM A H PHE 1 8 1.00 1 H 6.69 3.469 15.313 -1.534 A HA PHE 216 ATOM A HA PHE 1 8 1.00 1 H 6.62 6.114 16.093 -0.875 A HB2 PHE 216 ATOM A HB2 PHE 1 8 1.00 1 H 6.62 4.895 17.084 -1.100 A HB3 PHE 216 ATOM A HB3 PHE 1 8 1.00 1 H 6.69 6.257 14.827 1.277 A HD1 PHE 216 ATOM A HD1 PHE 1 8 1.00 1 H 9.62 3.333 17.539 0.766 A HD2 PHE 216 ATOM A HD2 PHE 1 8 1.00 1 H 10.68 5.806 14.770 3.530 A HE1 PHE 216 ATOM A HE1 PHE 1 8 1.00 1 H 8.85 2.883 17.474 3.045 A HE2 PHE 216 ATOM A HE2 PHE 1 8 1.00 1 H 10.26 4.105 16.100 4.432 A HZ PHE 216 ATOM A HZ PHE 1 8 1.00 1 H 6.84 3.867 15.332 -3.959 A N GLY 217 ATOM A N GLY 1 9 1.00 1 N 8.12 4.095 15.330 -5.400 A CA GLY 217 ATOM A CA GLY 1 9 1.00 1 C 9.32 3.097 16.166 -6.209 A C GLY 217 ATOM A C GLY 1 9 1.00 1 C 6.88 2.283 16.921 -5.689 A O GLY 217 ATOM A O GLY 1 9 1.00 1 O 12.68 3.073 16.131 -7.441 A OXT GLY 217 ATOM A OXT GLY 1 9 0.65 1 O 8.21 3.047 15.479 -3.748 A H GLY 217 ATOM A H GLY 1 9 1.00 1 H 9.74 4.985 15.672 -5.578 A HA2 GLY 217 ATOM A HA2 GLY 1 9 1.00 1 H 9.74 4.054 14.417 -5.724 A HA3 GLY 217 ATOM A HA3 GLY 1 9 1.00 1 H 20.37 6.800 12.645 -4.669 A O HOH 301 HETATM B O HOH 2 1.00 1 O 16.27 5.298 14.789 -8.582 A O HOH 302 HETATM B O HOH 2 1.00 1 O 21.42 4.741 0.478 10.919 A O HOH 303 HETATM B O HOH 2 1.00 1 O 19.02 6.599 2.208 5.379 A O HOH 304 HETATM B O HOH 2 1.00 1 O 0.199601 0.000000 0.000000 0.000000 0.035971 0.000000 0.000000 0.000000 0.027435 0.00000 0.00000 0.00000 Luo, F. Zhou, H. Gui, X. Li, D. Li, X. Liu, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 5.010 27.800 36.450 C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N O N 8 N N N 9 N O N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N N N 19 S C N 20 N C N 21 N O N 22 N C N 23 N C N 24 N O N 25 N O N 26 N O N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N N N 35 N C N 36 N C N 37 N O N 38 N O N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N O N 45 N H N 46 N H N 47 N N N 48 S C N 49 N C N 50 N O N 51 N C Y 52 N C Y 53 N C Y 54 N C Y 55 N C Y 56 N C Y 57 N C N 58 N O N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N doub N 50 N sing N 51 N sing N 52 N sing N 53 N sing Y 54 N doub Y 55 N sing Y 56 N sing N 57 N sing Y 58 N doub N 59 N sing Y 60 N doub N 61 N sing Y 62 N sing N 63 N sing N 64 N sing N 65 N sing UK Nat Commun 2041-1723 10 2006 2006 10.1038/s41467-019-09902-7 31043593 Structural basis for reversible amyloids of hnRNPA1 elucidates their role in stress granule assembly. 2019 0000-0002-6267-1585 0000-0002-2731-5622 0000-0003-3039-1877 0000-0002-4590-7795 0000-0002-8451-9947 0000-0003-3425-6672 0000-0002-1609-1539 10.2210/pdb6j60/pdb pdb_00006j60 90 90 90 5.01 27.8 36.45 P2(1)2(1)2(1) 19 We have used the direct mehod of SHELXD to solve the structure AB INITIO MODEL RECIPROCAL 6J60 0.96 DIFFRACTION PATTERN/LAYERLINES 3D CRYSTAL 2M NH4SO4, 0.1M CAPS PH 10.5, 0.2m LiSO4 10.5 1 1 289 1 NONE 500 1 1 82 0.96 0.994 3.5 262 28.59 82.9 0.96 1 14361 2935 30.87 1 0 0.251 0.282 1 9-mer peptide from Heterogeneous nuclear ribonucleoprotein A1 0 MULTIPLE SOURCES COMPLEX YES KILODALTONS/NANOMETER 0.88 3D ARRAY 1 1 CRYSTALLOGRAPHY .mrc file was transfered to SMV .img format 5.72 0.05 GATAN ULTRASCAN 4000 (4k x 4k) 200 BASIC NITROGEN FIELD EMISSION GUN FLOOD BEAM FEI TECNAI F20 DIFFRACTION GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER 1 no no COPPER 200 Quantifoil R2/2 IMAGE ACQUISITION eTasED 1 MASKING CTF CORRECTION 1 LAYERLINE INDEXING DIFFRACTION INDEXING MODEL FITTING 1 Coot 0.8.2 OTHER MOLECULAR REPLACEMENT 1 PHENIX 1.13-2998-000 LATTICE DISTORTION CORRECTION 1 SYMMETRY DETERMINATION 1 CRYSTALLOGRAPHY MERGING 1 RECONSTRUCTION direct method 1 SHELXD RECONSTRUCTION refine 1 PHENIX RECONSTRUCTION build model 1 Coot MODEL REFINEMENT 1 PHENIX 1.13-2998-000 20 powder NO NO NO YES 293.15 ETHANE blot 2 times 6J60 30 FEI VITROBOT MARK IV 883.863 9-mer peptide (GFGGNDNFG) from Heterogeneous nuclear ribonucleoprotein A1 1 syn polymer 18.015 water 4 nat water no no GFGGNDNFG GFGGNDNFG A polypeptide(L) n n n n n n n n n citation citation_author chem_comp_atom chem_comp_bond database_2 repository Initial release Data collection Database references Data collection Database references 1 0 2019-04-03 1 1 2019-10-16 1 2 2024-03-27 _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _database_2.pdbx_DOI _database_2.pdbx_database_accession N PDBJ Y PDBJ 2019-01-12 REL REL HOH water 9606 Homo sapiens sample 1 9 HOH 2 2 HOH HOH 301 A HOH 1 2 HOH HOH 302 A HOH 3 2 HOH HOH 303 A HOH 4 2 HOH HOH 304 A GLY 209 n 1 GLY 209 A PHE 210 n 2 PHE 210 A GLY 211 n 3 GLY 211 A GLY 212 n 4 GLY 212 A ASN 213 n 5 ASN 213 A ASP 214 n 6 ASP 214 A ASN 215 n 7 ASN 215 A PHE 216 n 8 PHE 216 A GLY 217 n 9 GLY 217 A author_defined_assembly 1 monomeric EM microscopy 0 0 1120 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 phenix.refine 0.2484 0.2332 0.2349 0.960 3.967 521 5150 10.12 86.93 0.17 1 FREE R-VALUE 1.36 31.52 0.90 1.11 0.014 64 1.044 84 10.981 19 0.122 5 0.006 14 refinement PHENIX (1.10_2155: ???) N hnRNP A1 reversible amyloid core GFGGNDNFG (residues 209-217) 1 N N 2 N N RNA BINDING PROTEIN phase separation, reversibility, RNA BINDING PROTEIN, MicroED 6J60 PDB 1 1 6J60 209 217 6J60 209 217 6J60 A 1 1 9 19 P 21 21 21