1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0002-6935-518X Kretsch, R.C. 0000-0002-1200-8937 Xu, L. 0000-0002-8910-3078 Chiu, W. 0000-0001-7497-0972 Das, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N O N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing To Be Published 0353 Assessment of nucleic acid structure prediction in CASP16 0000-0002-6935-518X 0000-0002-3023-2588 0000-0003-1010-536X 0000-0001-5917-4505 0000-0003-4190-3065 0000-0002-8909-0414 0000-0001-5066-7178 0000-0001-7497-0972 10.2210/pdb9yxa/pdb pdb_00009yxa 9YXA 21246 9.5 FSC 0.143 CUT-OFF POINT REL 2025-10-26 RCSB 2026-08-26 2026-08-26 BtCoV SL5 with SL5c truncated 8 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 1 BtCoV SL5 with SL5c truncated 0 SYNTHETIC COMPLEX 694008 Pipistrellus bat coronavirus HKU5 PARTICLE 1 1 SINGLE PARTICLE 60 FEI FALCON IV (4k x 4k) 300 FIELD EMISSION GUN FLOOD BEAM TFS KRIOS BRIGHT FIELD 2600 1200 1 PARTICLE SELECTION 1 cryoSPARC IMAGE ACQUISITION 1 MASKING CTF CORRECTION 1 LAYERLINE INDEXING DIFFRACTION INDEXING MODEL FITTING MODEL REFINEMENT OTHER INITIAL EULER ASSIGNMENT 1 FINAL EULER ASSIGNMENT 1 CLASSIFICATION 1 RECONSTRUCTION 1 cryoSPARC NO NO NO YES ETHANE 9YXA 40908.141 RNA (127-MER) 1 syn polymer no no GGAGCAUCGUGUCUCAAGUGCUUCACGGUCACAAUAUACCGUUUCGUCGGGUGCGUGGCAAUUCGGUGCACAUCAUGUCU UUCGUGGCUGGUGUGGUCAAGGUGCGACAAGUAUAGAGCAGAGCUCC GGAGCAUCGUGUCUCAAGUGCUUCACGGUCACAAUAUACCGUUUCGUCGGGUGCGUGGCAAUUCGGUGCACAUCAUGUCU UUCGUGGCUGGUGUGGUCAAGGUGCGACAAGUAUAGAGCAGAGCUCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n -4.724 1 19 A 1 A 127 -1.051 A_G1:C127_A 1 -4.909 -0.138 -0.118 -0.136 -6.743 1 19 A 2 A 126 -1.534 A_G2:C126_A 2 -4.726 -0.118 -0.143 -0.126 -4.526 1 20 A 3 A 125 -3.774 A_A3:U125_A 3 -2.656 0.025 -0.127 -0.073 -4.674 1 19 A 4 A 124 -1.702 A_G4:C124_A 4 -4.318 -0.106 -0.100 -0.120 1.023 1 19 A 5 A 123 -1.103 A_C5:G123_A 5 -2.891 0.165 -0.050 -0.126 -1.048 1 20 A 7 A 122 -1.013 A_U7:A122_A 6 -7.241 0.060 -0.166 -0.117 -2.758 1 19 A 8 A 121 -0.802 A_C8:G121_A 7 -0.174 0.169 -0.009 -0.137 -16.869 1 20 A 10 A 120 -0.614 A_U10:A120_A 8 -12.052 0.132 -0.092 -0.070 -4.992 1 19 A 11 A 119 -1.079 A_G11:C119_A 9 -5.567 -0.137 -0.112 -0.136 2.271 1 19 A 13 A 118 -0.659 A_C13:G118_A 10 -3.722 0.152 -0.084 -0.139 -2.572 1 20 A 14 A 117 -2.047 A_U14:A117_A 11 -5.994 0.074 -0.164 -0.104 -2.901 1 19 A 15 A 116 -1.284 A_C15:G116_A 12 -0.726 0.162 0.018 -0.130 -1.886 1 28 A 18 A 114 -1.643 A_G18:U114_A 13 -11.478 -2.107 -0.011 -0.486 -2.116 1 20 A 19 A 113 -1.344 A_U19:A113_A 14 -8.863 0.099 -0.140 -0.115 -3.167 1 28 A 20 A 112 -4.307 A_G20:U112_A 15 -5.685 -2.050 0.015 -0.470 2.595 1 19 A 21 A 111 -1.705 A_C21:G111_A 16 -3.148 0.149 -0.050 -0.112 0.032 1 20 A 22 A 110 -2.315 A_U22:A110_A 17 -4.401 0.063 -0.159 -0.094 -2.226 1 20 A 23 A 109 -2.096 A_U23:A109_A 18 -5.419 0.071 -0.114 -0.101 -4.856 1 19 A 96 A 108 -1.092 A_G96:C108_A 19 -5.522 -0.135 -0.111 -0.137 -4.029 1 20 A 97 A 107 -1.884 A_U97:A107_A 20 -7.717 0.076 -0.122 -0.104 -2.270 1 19 A 98 A 106 -1.218 A_C98:G106_A 21 -0.914 0.164 0.015 -0.128 45.009 1 20 A 99 A 103 -20.567 A_A99:U103_A 22 18.977 -0.265 0.589 0.357 -38.682 4 A 45 A 42 -38.682 A_C45:U42_A 23 5.953 -6.482 0.360 -4.921 7.021 1 19 A 48 A 41 -1.761 A_C48:G41_A 24 -4.761 0.105 -0.168 -0.125 -2.291 1 19 A 49 A 40 -0.671 A_G49:C40_A 25 -3.586 -0.148 -0.078 -0.141 1.459 1 19 A 51 A 39 -1.192 A_G51:C39_A 26 -1.225 -0.171 -0.021 -0.125 8.315 1 20 A 52 A 38 -1.490 A_U52:A38_A 27 -2.830 0.021 -0.226 -0.108 -0.055 1 28 A 53 A 37 -1.648 A_G53:U37_A 28 -3.313 -2.122 -0.041 -0.476 7.976 A 54 A 33 -35.022 A_C54:A33_A 29 2.333 -2.386 -1.153 0.372 -0.680 1 19 A 55 A 32 -1.306 A_G55:C32_A 30 -2.491 -0.161 -0.041 -0.123 3.326 1 20 A 56 A 31 -4.771 A_U56:A31_A 31 -2.032 -0.060 -0.115 -0.050 3.930 1 19 A 57 A 30 -0.465 A_G57:C30_A 32 -0.310 -0.157 -0.003 -0.152 3.931 1 28 A 58 A 29 -1.977 A_G58:U29_A 33 -2.489 -2.123 -0.009 -0.458 5.217 1 19 A 59 A 28 -1.489 A_C59:G28_A 34 -5.424 0.134 -0.108 -0.126 7.019 1 19 A 64 A 27 -1.762 A_C64:G27_A 35 -4.782 0.106 -0.167 -0.126 -2.303 1 19 A 65 A 26 -0.662 A_G65:C26_A 36 -3.583 -0.148 -0.077 -0.140 4.555 1 20 A 67 A 25 -2.885 A_U67:A25_A 37 -3.188 -0.021 -0.159 -0.086 -2.382 1 19 A 68 A 24 -0.645 A_G68:C24_A 38 -3.510 -0.145 -0.077 -0.140 2.400 1 19 A 69 A 95 -0.637 A_C69:G95_A 39 -3.514 0.146 -0.078 -0.139 -4.557 1 20 A 70 A 94 -2.869 A_A70:U94_A 40 -3.181 0.022 -0.160 -0.085 -0.775 1 19 A 71 A 93 -0.967 A_C71:G93_A 41 -1.489 0.157 -0.023 -0.129 -3.888 1 20 A 72 A 92 -4.380 A_A72:U92_A 42 -2.899 0.038 -0.117 -0.052 -2.242 1 28 A 73 A 91 -2.725 A_U73:G91_A 43 -1.560 2.123 -0.010 -0.457 -2.409 1 19 A 74 A 90 -0.410 A_C74:G90_A 44 -0.806 0.158 -0.029 -0.154 -3.354 1 20 A 75 A 89 -4.422 A_A75:U89_A 45 -2.208 0.051 -0.123 -0.058 -5.216 1 19 A 77 A 88 -1.492 A_G77:C88_A 46 -5.418 -0.134 -0.108 -0.126 -3.923 1 28 A 78 A 87 -1.980 A_U78:G87_A 47 -2.483 2.122 -0.010 -0.458 -3.477 1 19 A 79 A 86 -0.459 A_C79:G86_A 48 -0.981 0.174 -0.011 -0.155 2.874 33.237 A A 1 2 11.749 A A 127 126 3.287 6.677 -0.019 -1.789 AA_G1G2:C126C127_AA 1 0.111 -0.195 32.578 -4.191 0.050 2.769 33.396 A A 2 3 12.835 A A 126 125 3.191 7.319 -0.031 -1.636 AA_G2A3:U125C126_AA 2 -0.301 0.527 32.605 -3.965 0.008 2.869 31.796 A A 3 4 12.922 A A 125 124 3.315 7.024 0.314 -1.700 AA_A3G4:C124U125_AA 3 -0.155 0.286 31.030 -4.334 -0.600 2.828 33.617 A A 4 5 8.802 A A 124 123 3.102 5.072 0.235 -1.644 AA_G4C5:G123C124_AA 4 0.052 -0.091 33.243 -3.598 -0.398 2.258 62.337 A A 5 7 26.339 A A 123 122 3.382 26.411 -1.446 -1.429 AA_C5U7:A122G123_AA 5 11.589 -11.557 55.869 -2.494 1.885 2.831 33.901 A A 7 8 12.468 A A 122 121 3.276 7.218 0.029 -1.807 AA_U7C8:G121A122_AA 6 -0.112 0.193 33.146 -4.194 -0.066 4.041 63.205 A A 8 10 20.211 A A 121 120 5.472 20.502 -1.443 -1.502 AA_C8U10:A120G121_AA 7 21.475 -21.171 56.446 -2.853 2.864 2.173 33.716 A A 10 11 32.171 A A 120 119 2.973 17.738 0.498 -0.614 AA_U10G11:C119A120_AA 8 -3.115 5.650 28.622 -3.525 -1.292 2.553 52.329 A A 11 13 18.957 A A 119 118 2.875 16.465 -1.943 -0.960 AA_G11C13:G118C119_AA 9 -2.643 3.043 49.780 -2.016 2.054 2.916 32.294 A A 13 14 11.549 A A 118 117 3.345 6.380 0.095 -1.902 AA_C13U14:A117G118_AA 10 1.911 -3.460 31.617 -4.514 0.157 2.885 33.394 A A 14 15 11.421 A A 117 116 3.275 6.523 0.196 -1.738 AA_U14C15:G116A117_AA 11 -0.078 0.137 32.769 -4.052 -0.353 4.114 84.342 A A 15 18 22.807 A A 116 114 5.804 30.124 -1.562 -4.236 AA_C15G18:U114G116_AA 12 9.141 -6.920 79.288 -4.282 1.506 2.956 40.843 A A 18 19 8.297 A A 114 113 3.176 5.772 -0.075 -1.417 AA_G18U19:A113U114_AA 13 -0.546 0.785 40.447 -2.628 0.051 2.297 28.168 A A 19 20 21.561 A A 113 112 3.161 10.229 -0.122 -1.800 AA_U19G20:U112A113_AA 14 -3.812 8.035 26.007 -5.777 -0.524 2.873 40.579 A A 20 21 9.701 A A 112 111 3.132 6.698 0.252 -1.326 AA_G20C21:G111U112_AA 15 -1.360 1.970 40.023 -2.601 -0.503 2.843 32.180 A A 21 22 14.306 A A 111 110 3.361 7.852 0.202 -1.793 AA_C21U22:A110G111_AA 16 1.191 -2.170 31.209 -4.586 -0.160 2.906 32.768 A A 22 23 12.662 A A 110 109 3.344 7.089 0.238 -1.750 AA_U22U23:A109A110_AA 17 0.971 -1.735 31.998 -4.282 -0.260 2.072 44.999 A A 23 96 26.885 A A 109 108 3.090 19.915 -0.372 -1.643 AA_U23G96:C108A109_AA 18 2.994 -4.042 40.452 -3.649 0.712 2.951 33.829 A A 96 97 8.031 A A 108 107 3.213 4.659 0.081 -1.754 AA_G96U97:A107C108_AA 19 0.974 -1.679 33.503 -3.726 0.009 2.800 33.229 A A 97 98 11.846 A A 107 106 3.195 6.730 0.204 -1.674 AA_U97C98:G106A107_AA 20 -0.253 0.446 32.558 -3.971 -0.396 2.077 54.502 A A 98 99 -9.273 A A 106 103 2.465 -8.368 2.238 -2.050 AA_C98A99:U103G106_AA 21 -14.975 16.594 51.930 -1.876 -3.092 1.885 81.316 A A 45 48 8.220 A A 42 41 2.067 10.690 -0.792 -1.482 AA_C45C48:G41U42_AA 22 1.047 -0.805 80.726 -1.303 0.624 2.878 32.037 A A 48 49 15.569 A A 41 40 3.491 8.493 0.024 -1.897 AA_C48G49:C40G41_AA 23 -1.227 2.250 30.895 -4.956 -0.262 3.065 55.506 A A 49 51 18.420 A A 40 39 4.778 16.680 -2.665 -1.977 AA_G49G51:C39C40_AA 24 16.936 -18.703 50.527 -3.356 4.113 2.826 32.282 A A 51 52 8.787 A A 39 38 3.103 4.868 -0.244 -1.651 AA_G51U52:A38C39_AA 25 0.094 -0.169 31.922 -3.758 0.454 2.480 27.602 A A 52 53 19.549 A A 38 37 3.417 9.105 -0.032 -2.155 AA_U52G53:U37A38_AA 26 -5.043 10.828 25.599 -6.596 -1.085 3.325 68.650 A A 53 54 7.191 A A 37 33 3.359 8.095 2.026 -0.461 AA_G53C54:A33U37_AA 27 1.250 -1.110 68.219 -0.717 -1.749 1.915 56.016 A A 54 55 34.793 A A 33 32 3.648 30.768 1.895 -1.251 AA_C54G55:C32A33_AA 28 -13.619 15.400 45.453 -3.021 -2.765 2.887 33.090 A A 55 56 10.624 A A 32 31 3.227 6.019 -0.508 -1.650 AA_G55U56:A31C32_AA 29 -0.149 0.264 32.552 -3.854 0.868 2.675 31.280 A A 56 57 16.103 A A 31 30 3.244 8.572 0.051 -1.656 AA_U56G57:C30A31_AA 30 -1.733 3.255 30.062 -4.568 -0.396 2.441 27.482 A A 57 58 16.072 A A 30 29 3.118 7.509 -0.230 -2.082 AA_G57G58:U29C30_AA 31 -4.387 9.389 26.095 -5.994 -0.456 3.067 40.904 A A 58 59 6.874 A A 29 28 3.260 4.793 -0.152 -1.559 AA_G58C59:G28U29_AA 32 -0.986 1.414 40.622 -2.741 0.113 2.932 86.359 A A 59 64 22.671 A A 28 27 3.760 30.504 -4.738 -0.174 AA_C59C64:G27G28_AA 33 12.869 -9.564 80.941 -0.859 3.771 2.879 32.028 A A 64 65 15.559 A A 27 26 3.491 8.485 0.023 -1.897 AA_C64G65:C26G27_AA 34 -1.220 2.238 30.889 -4.957 -0.261 3.246 48.171 A A 65 67 -4.331 A A 26 25 3.179 -3.532 -2.343 -1.411 AA_G65U67:A25C26_AA 35 0.484 -0.593 48.047 -1.457 2.907 2.847 32.416 A A 67 68 14.930 A A 25 24 3.423 8.246 0.117 -1.869 AA_U67G68:C24A25_AA 36 -1.138 2.060 31.356 -4.764 -0.404 2.361 47.658 A A 68 69 28.342 A A 24 95 3.898 21.392 -0.448 -2.193 AA_G68C69:G95C24_AA 37 -20.448 27.091 37.784 -4.573 -1.222 2.846 32.415 A A 69 70 14.968 A A 95 94 3.424 8.266 -0.117 -1.869 AA_C69A70:U94G95_AA 38 1.137 -2.058 31.351 -4.767 0.405 2.880 33.374 A A 70 71 9.824 A A 94 93 3.203 5.616 0.295 -1.713 AA_A70C71:G93U94_AA 39 0.040 -0.069 32.911 -3.855 -0.508 2.803 32.170 A A 71 72 15.539 A A 93 92 3.374 8.511 -0.036 -1.756 AA_C71A72:U92G93_AA 40 1.260 -2.301 31.027 -4.633 0.282 3.073 39.793 A A 72 73 9.052 A A 92 91 3.326 6.138 0.391 -1.523 AA_A72U73:G91U92_AA 41 1.046 -1.542 39.323 -2.938 -0.456 2.440 27.757 A A 73 74 17.059 A A 91 90 3.148 8.035 0.307 -2.058 AA_U73C74:G90G91_AA 42 4.494 -9.541 26.215 -5.994 0.312 2.703 31.419 A A 74 75 16.349 A A 90 89 3.290 8.739 -0.045 -1.685 AA_C74A75:U89G90_AA 43 1.574 -2.944 30.169 -4.644 0.359 1.971 69.098 A A 75 77 40.025 A A 89 88 4.471 41.751 -0.425 -2.196 AA_A75G77:C88U89_AA 44 25.515 -24.461 50.384 -3.766 1.493 3.067 40.902 A A 77 78 6.877 A A 88 87 3.260 4.795 0.153 -1.559 AA_G77U78:G87C88_AA 45 0.997 -1.430 40.620 -2.741 -0.112 2.482 27.212 A A 78 79 14.871 A A 87 86 3.098 6.892 0.251 -2.082 AA_U78C79:G86G87_AA 46 4.409 -9.513 25.975 -5.935 0.432 repository Initial release repository Initial release 1 0 2026-08-26 1 0 2026-08-26 United States National Science Foundation (NSF, United States) 2330652 rhiju@stanford.edu 0000-0001-7497-0972 Rhiju Das principal investigator/group leader BtCoV SL5 with SL5c truncated N RCSB Y RCSB 2025-10-26 REL 694008 Pipistrellus bat coronavirus HKU5 sample 1 127 N G 1 n 1 G 1 A G 2 n 2 G 2 A A 3 n 3 A 3 A G 4 n 4 G 4 A C 5 n 5 C 5 A A 6 n 6 A 6 A U 7 n 7 U 7 A C 8 n 8 C 8 A G 9 n 9 G 9 A U 10 n 10 U 10 A G 11 n 11 G 11 A U 12 n 12 U 12 A C 13 n 13 C 13 A U 14 n 14 U 14 A C 15 n 15 C 15 A A 16 n 16 A 16 A A 17 n 17 A 17 A G 18 n 18 G 18 A U 19 n 19 U 19 A G 20 n 20 G 20 A C 21 n 21 C 21 A U 22 n 22 U 22 A U 23 n 23 U 23 A C 24 n 24 C 24 A A 25 n 25 A 25 A C 26 n 26 C 26 A G 27 n 27 G 27 A G 28 n 28 G 28 A U 29 n 29 U 29 A C 30 n 30 C 30 A A 31 n 31 A 31 A C 32 n 32 C 32 A A 33 n 33 A 33 A A 34 n 34 A 34 A U 35 n 35 U 35 A A 36 n 36 A 36 A U 37 n 37 U 37 A A 38 n 38 A 38 A C 39 n 39 C 39 A C 40 n 40 C 40 A G 41 n 41 G 41 A U 42 n 42 U 42 A U 43 n 43 U 43 A U 44 n 44 U 44 A C 45 n 45 C 45 A G 46 n 46 G 46 A U 47 n 47 U 47 A C 48 n 48 C 48 A G 49 n 49 G 49 A G 50 n 50 G 50 A G 51 n 51 G 51 A U 52 n 52 U 52 A G 53 n 53 G 53 A C 54 n 54 C 54 A G 55 n 55 G 55 A U 56 n 56 U 56 A G 57 n 57 G 57 A G 58 n 58 G 58 A C 59 n 59 C 59 A A 60 n 60 A 60 A A 61 n 61 A 61 A U 62 n 62 U 62 A U 63 n 63 U 63 A C 64 n 64 C 64 A G 65 n 65 G 65 A G 66 n 66 G 66 A U 67 n 67 U 67 A G 68 n 68 G 68 A C 69 n 69 C 69 A A 70 n 70 A 70 A C 71 n 71 C 71 A A 72 n 72 A 72 A U 73 n 73 U 73 A C 74 n 74 C 74 A A 75 n 75 A 75 A U 76 n 76 U 76 A G 77 n 77 G 77 A U 78 n 78 U 78 A C 79 n 79 C 79 A U 80 n 80 U 80 A U 81 n 81 U 81 A U 82 n 82 U 82 A C 83 n 83 C 83 A G 84 n 84 G 84 A U 85 n 85 U 85 A G 86 n 86 G 86 A G 87 n 87 G 87 A C 88 n 88 C 88 A U 89 n 89 U 89 A G 90 n 90 G 90 A G 91 n 91 G 91 A U 92 n 92 U 92 A G 93 n 93 G 93 A U 94 n 94 U 94 A G 95 n 95 G 95 A G 96 n 96 G 96 A U 97 n 97 U 97 A C 98 n 98 C 98 A A 99 n 99 A 99 A A 100 n 100 A 100 A G 101 n 101 G 101 A G 102 n 102 G 102 A U 103 n 103 U 103 A G 104 n 104 G 104 A C 105 n 105 C 105 A G 106 n 106 G 106 A A 107 n 107 A 107 A C 108 n 108 C 108 A A 109 n 109 A 109 A A 110 n 110 A 110 A G 111 n 111 G 111 A U 112 n 112 U 112 A A 113 n 113 A 113 A U 114 n 114 U 114 A A 115 n 115 A 115 A G 116 n 116 G 116 A A 117 n 117 A 117 A G 118 n 118 G 118 A C 119 n 119 C 119 A A 120 n 120 A 120 A G 121 n 121 G 121 A A 122 n 122 A 122 A G 123 n 123 G 123 A C 124 n 124 C 124 A U 125 n 125 U 125 A C 126 n 126 C 126 A C 127 n 127 C 127 A author_defined_assembly 1 monomeric not applicable electron microscopy 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A HO2' O4 A U 34 37 1.58 1 A A C3' OP2 C G 105 106 1.75 1 A A C3' OP1 U C 47 48 1.76 1 A A O4' O6 U G 35 49 2.13 2 A A HO2' O2 G C 53 54 1.59 3 A A C3' OP1 U C 63 64 1.53 3 A A OP2 O2' A G 61 101 2.11 5 A A O2' OP2 A C 38 40 2.12 5 A A O2' O2 C U 59 103 2.14 7 A A O2' OP2 C G 59 104 2.10 8 A A C3' OP1 A U 6 7 1.55 8 A A OP1 H42 U C 62 108 1.58 8 A A O2' OP2 G G 65 93 2.14 8 A A O2' O2' A C 60 105 2.19 10 A A HO2' OP2 A U 61 97 1.56 10 A A O2' O6 A G 6 9 2.15 10 A A O2' OP2 C G 59 104 2.17 11 A A C3' OP2 G U 9 10 1.58 11 A A O2' OP2 U G 85 87 2.12 12 A A O2' OP2 A C 6 8 2.16 14 A A C3' OP1 A G 115 116 1.43 14 A A C3' OP1 C G 105 106 1.73 14 A A C3' OP1 U G 76 77 1.79 15 A A HO2' OP2 G U 65 67 1.49 15 A A C3' OP2 A U 34 35 1.51 15 A A HO2' OP2 A C 38 40 1.58 15 A A C3' OP1 U G 85 86 1.68 15 A A C3' OP1 G U 9 10 1.68 15 A A O2' OP2 U U 12 14 2.16 15 A A O2' OP2 G U 65 67 2.17 16 A A O2' OP1 C G 105 106 1.63 16 A A O2 O2' U A 62 100 2.07 17 A A O4' OP2 A C 60 105 2.15 17 A A O2 O2' U A 63 100 2.18 18 A A C3' OP2 A G 17 18 1.43 18 A A O2' HO2' A U 34 47 1.44 18 A A C3' OP2 U G 85 86 1.53 18 A A C3' OP2 C G 105 106 1.62 18 A A O2' OP1 A C 25 26 1.76 18 A A O2' OP2 A C 6 8 2.10 20 A A C3' OP2 A G 17 18 1.47 20 A A C3' OP2 A U 6 7 1.49 20 A A HO2' O4 U U 62 97 1.59 20 A A C3' OP2 A U 34 35 1.63 20 A A C3' OP1 G G 65 66 1.71 21 A A C3' OP1 U G 76 77 1.31 21 A A H3' OP1 U G 76 77 1.49 21 A A O2' OP2 U G 63 65 2.13 22 A A C3' OP1 U C 63 64 1.59 22 A A C3' OP2 A U 34 35 1.61 22 A A O2' OP1 A A 6 117 2.14 23 A A C3' OP2 A G 115 116 1.39 23 A A C3' OP2 U G 85 86 1.55 23 A A C3' OP1 A G 17 18 1.64 23 A A O2' OP2 C A 105 107 2.19 24 A A HO2' OP2 C U 54 56 1.58 24 A A O2' O6 U G 43 46 2.19 25 A A HO2' OP2 A U 34 35 1.55 25 A A C3' OP1 A U 34 35 1.64 26 A A O2' OP2 G U 65 67 2.08 26 A A O2' O4' U C 81 83 2.13 27 A A OP2 HO2' U U 73 85 1.58 27 A A C3' OP1 U G 76 77 1.80 27 A A OP2 O2' U U 73 85 2.12 28 A A C3' OP2 G G 65 66 1.33 28 A A C3' OP2 A U 6 7 1.48 29 A A C3' OP2 A U 34 35 1.53 29 A A N6 O2' A G 34 46 2.14 30 A A C3' OP2 A U 36 37 1.22 30 A A C3' OP1 U G 76 77 1.73 30 A A O2' O6 G G 104 106 2.06 30 A A O2' O6 U G 44 46 2.11 30 A A O4' O6 U G 35 49 2.13 1 -13.82 2.20 105.20 91.38 A A A O3' P OP2 A G G 17 18 18 Y 1 9.13 1.10 110.50 119.63 A A A O3' P OP1 A G G 17 18 18 Y 1 9.74 1.60 113.70 123.44 A A A C2' C3' O3' A A A 36 36 36 N 1 -13.48 2.20 105.20 91.72 A A A O3' P OP2 A U U 36 37 37 Y 1 8.54 1.10 110.50 119.04 A A A O3' P OP1 A U U 36 37 37 Y 1 -80.90 2.20 105.20 24.30 A A A O3' P OP1 U C C 47 48 48 Y 1 -61.53 2.20 105.20 43.67 A A A O3' P OP2 U G G 85 86 86 Y 1 32.30 1.10 110.50 142.80 A A A O3' P OP1 U G G 85 86 86 Y 1 -93.29 2.20 105.20 11.91 A A A O3' P OP2 C G G 105 106 106 Y 1 17.77 1.10 110.50 128.27 A A A O3' P OP1 C G G 105 106 106 Y 1 -14.03 2.20 105.20 91.17 A A A O3' P OP2 A G G 115 116 116 Y 1 9.22 1.10 110.50 119.72 A A A O3' P OP1 A G G 115 116 116 Y 1 -14.60 2.20 105.20 90.60 A A A O3' P OP2 G C C 118 119 119 Y 1 9.67 1.10 110.50 120.17 A A A O3' P OP1 G C C 118 119 119 Y 1 -75.19 2.20 105.20 30.01 A A A O3' P OP1 A G G 120 121 121 Y 2 -5.20 0.80 108.20 103.00 A A A O4' C1' N9 A A A 38 38 38 N 3 -13.59 2.20 105.20 91.61 A A A O3' P OP2 A U U 6 7 7 Y 3 8.68 1.10 110.50 119.18 A A A O3' P OP1 A U U 6 7 7 Y 3 8.34 1.10 110.50 118.84 A A A O3' P OP1 A G G 17 18 18 Y 3 -44.96 2.20 105.20 60.24 A A A O3' P OP2 U C C 47 48 48 Y 3 -42.27 2.20 105.20 62.93 A A A O3' P OP1 U C C 47 48 48 Y 3 -5.38 0.70 101.30 95.92 A A A C3' C2' C1' U U U 63 63 63 N 3 10.72 1.10 110.50 121.22 A A A O3' P OP2 U C C 63 64 64 Y 3 -102.19 2.20 105.20 3.01 A A A O3' P OP1 U C C 63 64 64 Y 3 9.38 1.10 110.50 119.88 A A A O3' P OP2 C G G 105 106 106 Y 3 -14.30 2.20 105.20 90.90 A A A O3' P OP1 C G G 105 106 106 Y 3 -18.76 2.20 105.20 86.44 A A A O3' P OP2 A G G 115 116 116 Y 3 -68.98 2.20 105.20 36.22 A A A O3' P OP1 A G G 115 116 116 Y 5 -50.16 2.20 105.20 55.04 A A A O3' P OP2 G U U 9 10 10 Y 5 -37.23 2.20 105.20 67.97 A A A O3' P OP1 G U U 9 10 10 Y 5 31.92 1.10 110.50 142.42 A A A O3' P OP2 U C C 47 48 48 Y 5 -53.74 2.20 105.20 51.46 A A A O3' P OP1 U C C 47 48 48 Y 5 -19.22 2.20 105.20 85.98 A A A O3' P OP2 C G G 54 55 55 Y 5 -68.47 2.20 105.20 36.73 A A A O3' P OP1 C G G 54 55 55 Y 5 -27.17 2.20 105.20 78.03 A A A O3' P OP2 U C C 63 64 64 Y 5 19.61 1.10 110.50 130.11 A A A O3' P OP1 U C C 63 64 64 Y 5 13.23 1.10 110.50 123.73 A A A O3' P OP2 U G G 76 77 77 Y 5 -18.92 2.20 105.20 86.28 A A A O3' P OP1 U G G 76 77 77 Y 5 31.98 1.10 110.50 142.48 A A A O3' P OP2 A G G 115 116 116 Y 5 -53.74 2.20 105.20 51.46 A A A O3' P OP1 A G G 115 116 116 Y 7 7.28 1.20 119.70 126.98 A A A C3' O3' P A A A 16 16 17 Y 8 11.06 1.10 110.50 121.56 A A A O3' P OP2 A U U 6 7 7 Y 8 -101.90 2.20 105.20 3.30 A A A O3' P OP1 A U U 6 7 7 Y 8 32.05 1.10 110.50 142.55 A A A O3' P OP2 G U U 9 10 10 Y 8 -53.86 2.20 105.20 51.34 A A A O3' P OP1 G U U 9 10 10 Y 8 -40.76 2.20 105.20 64.44 A A A O3' P OP2 U C C 12 13 13 Y 8 -46.52 2.20 105.20 58.68 A A A O3' P OP1 U C C 12 13 13 Y 8 32.08 1.10 110.50 142.58 A A A O3' P OP2 A G G 17 18 18 Y 8 -53.72 2.20 105.20 51.48 A A A O3' P OP1 A G G 17 18 18 Y 8 7.32 1.10 110.50 117.82 A A A O3' P OP1 A U U 34 35 35 Y 8 -6.65 1.00 102.60 95.95 A A A C4' C3' C2' U U U 42 42 42 N 8 4.52 0.70 108.50 113.02 A A A O4' C1' N1 U U U 63 63 63 N 8 -17.42 2.20 105.20 87.78 A A A O3' P OP2 U G G 76 77 77 Y 8 -70.41 2.20 105.20 34.79 A A A O3' P OP1 U G G 76 77 77 Y 8 -81.33 2.20 105.20 23.87 A A A O3' P OP1 A G G 115 116 116 Y 11 -99.81 2.20 105.20 5.39 A A A O3' P OP2 G U U 9 10 10 Y 11 12.75 1.10 110.50 123.25 A A A O3' P OP1 G U U 9 10 10 Y 11 -18.69 2.20 105.20 86.51 A A A O3' P OP2 U G G 76 77 77 Y 11 13.20 1.10 110.50 123.70 A A A O3' P OP1 U G G 76 77 77 Y 11 6.76 0.90 109.80 116.56 A A A C5' C4' O4' G G G 102 102 102 N 11 -48.94 2.20 105.20 56.26 A A A O3' P OP2 C G G 105 106 106 Y 11 31.07 1.10 110.50 141.57 A A A O3' P OP1 C G G 105 106 106 Y 14 -14.71 2.20 105.20 90.49 A A A O3' P OP2 G U U 66 67 67 Y 14 -73.23 2.20 105.20 31.97 A A A O3' P OP1 G U U 66 67 67 Y 14 -41.18 2.20 105.20 64.02 A A A O3' P OP2 U G G 76 77 77 Y 14 -46.25 2.20 105.20 58.95 A A A O3' P OP1 U G G 76 77 77 Y 14 18.02 1.10 110.50 128.52 A A A O3' P OP2 C G G 105 106 106 Y 14 -92.79 2.20 105.20 12.41 A A A O3' P OP1 C G G 105 106 106 Y 14 12.16 1.10 110.50 122.66 A A A O3' P OP2 A G G 115 116 116 Y 14 -100.61 2.20 105.20 4.59 A A A O3' P OP1 A G G 115 116 116 Y 15 -75.97 2.20 105.20 29.23 A A A O3' P OP1 G U U 9 10 10 Y 15 -55.12 2.20 105.20 50.08 A A A O3' P OP2 U C C 12 13 13 Y 15 32.24 1.10 110.50 142.74 A A A O3' P OP1 U C C 12 13 13 Y 15 -85.11 2.20 105.20 20.09 A A A O3' P OP2 A U U 34 35 35 Y 15 -38.34 2.20 105.20 66.86 A A A O3' P OP2 U C C 47 48 48 Y 15 -48.87 2.20 105.20 56.33 A A A O3' P OP1 U C C 47 48 48 Y 15 -19.75 2.20 105.20 85.45 A A A O3' P OP2 U C C 63 64 64 Y 15 13.92 1.10 110.50 124.42 A A A O3' P OP1 U C C 63 64 64 Y 15 -13.61 2.20 105.20 91.59 A A A O3' P OP2 U G G 76 77 77 Y 15 8.79 1.10 110.50 119.29 A A A O3' P OP1 U G G 76 77 77 Y 15 -96.32 2.20 105.20 8.88 A A A O3' P OP1 U G G 85 86 86 Y 15 -21.05 2.20 105.20 84.15 A A A O3' P OP2 A G G 115 116 116 Y 15 15.02 1.10 110.50 125.52 A A A O3' P OP1 A G G 115 116 116 Y 16 31.97 1.10 110.50 142.47 A A A O3' P OP2 U C C 12 13 13 Y 16 -53.74 2.20 105.20 51.46 A A A O3' P OP1 U C C 12 13 13 Y 16 32.09 1.10 110.50 142.59 A A A O3' P OP2 C G G 54 55 55 Y 16 -53.73 2.20 105.20 51.47 A A A O3' P OP1 C G G 54 55 55 Y 16 4.89 0.80 109.90 114.79 A A A C1' O4' C4' U U U 62 62 62 N 16 8.18 1.10 110.50 118.68 A A A O3' P OP1 G G G 65 66 66 Y 16 7.17 1.10 110.50 117.67 A A A O3' P OP1 U G G 76 77 77 Y 16 -14.63 2.20 105.20 90.57 A A A O3' P OP2 A G G 115 116 116 Y 16 9.72 1.10 110.50 120.22 A A A O3' P OP1 A G G 115 116 116 Y 18 7.19 1.10 110.50 117.69 A A A O3' P OP1 A U U 6 7 7 Y 18 -99.07 2.20 105.20 6.13 A A A O3' P OP2 A G G 17 18 18 Y 18 32.06 1.10 110.50 142.56 A A A O3' P OP2 U C C 47 48 48 Y 18 -53.72 2.20 105.20 51.48 A A A O3' P OP1 U C C 47 48 48 Y 18 8.16 1.10 110.50 118.66 A A A O3' P OP1 G G G 50 51 51 Y 18 -93.91 2.20 105.20 11.29 A A A O3' P OP2 U G G 85 86 86 Y 18 17.33 1.10 110.50 127.83 A A A O3' P OP1 U G G 85 86 86 Y 18 -97.95 2.20 105.20 7.25 A A A O3' P OP2 C G G 105 106 106 Y 20 -92.08 2.20 105.20 13.12 A A A O3' P OP2 A U U 6 7 7 Y 20 -100.64 2.20 105.20 4.56 A A A O3' P OP2 A G G 17 18 18 Y 20 4.28 0.70 108.50 112.78 A A A O4' C1' N9 A A A 33 33 33 N 20 -97.36 2.20 105.20 7.84 A A A O3' P OP2 A U U 34 35 35 Y 20 14.72 1.10 110.50 125.22 A A A O3' P OP1 A U U 34 35 35 Y 20 -30.97 2.20 105.20 74.23 A A A O3' P OP2 U C C 63 64 64 Y 20 22.34 1.10 110.50 132.84 A A A O3' P OP1 U C C 63 64 64 Y 20 -13.68 2.20 105.20 91.52 A A A O3' P OP2 G G G 65 66 66 Y 20 -74.36 2.20 105.20 30.84 A A A O3' P OP1 G G G 65 66 66 Y 20 9.06 1.20 119.70 128.76 A A A C3' O3' P C C G 105 105 106 Y 20 -17.43 2.20 105.20 87.77 A A A O3' P OP2 G C C 123 124 124 Y 20 11.02 1.10 110.50 121.52 A A A O3' P OP1 G C C 123 124 124 Y 21 7.89 1.10 110.50 118.39 A A A O3' P OP1 U C C 12 13 13 Y 21 -89.15 2.20 105.20 16.05 A A A O3' P OP1 A U U 34 35 35 Y 21 8.15 1.10 110.50 118.65 A A A O3' P OP2 U C C 47 48 48 Y 21 9.71 1.20 119.70 129.41 A A A C3' O3' P U U G 76 76 77 Y 21 -17.50 2.20 105.20 87.70 A A A O3' P OP2 U G G 76 77 77 Y 21 -67.78 2.20 105.20 37.42 A A A O3' P OP1 U G G 76 77 77 Y 21 -13.70 1.00 104.00 90.30 A A A O4' C4' C3' A A A 100 100 100 N 21 -8.17 1.20 109.10 100.93 A A A C5' C4' O4' A A A 100 100 100 N 21 -4.48 0.70 101.30 96.82 A A A C3' C2' C1' A A A 100 100 100 N 22 13.40 0.90 109.80 123.20 A A A C5' C4' O4' A A A 6 6 6 N 22 -89.90 2.20 105.20 15.30 A A A O3' P OP2 G U U 9 10 10 Y 22 -26.70 2.20 105.20 78.50 A A A O3' P OP2 A G G 17 18 18 Y 22 19.29 1.10 110.50 129.79 A A A O3' P OP1 A G G 17 18 18 Y 22 -78.68 2.20 105.20 26.52 A A A O3' P OP2 A U U 34 35 35 Y 22 -26.10 2.20 105.20 79.10 A A A O3' P OP2 U C C 47 48 48 Y 22 -61.45 2.20 105.20 43.75 A A A O3' P OP1 U C C 47 48 48 Y 22 -95.99 2.20 105.20 9.21 A A A O3' P OP1 U C C 63 64 64 Y 22 -14.82 2.20 105.20 90.38 A A A O3' P OP2 G G G 65 66 66 Y 22 9.85 1.10 110.50 120.35 A A A O3' P OP1 G G G 65 66 66 Y 22 7.92 1.10 110.50 118.42 A A A O3' P OP1 U G G 85 86 86 Y 22 -80.96 2.20 105.20 24.24 A A A O3' P OP2 C G G 105 106 106 Y 22 -15.09 2.20 105.20 90.11 A A A O3' P OP2 A G G 115 116 116 Y 22 10.23 1.10 110.50 120.73 A A A O3' P OP1 A G G 115 116 116 Y 23 6.77 1.10 110.50 117.27 A A A O3' P OP1 A U U 6 7 7 Y 23 14.56 1.10 110.50 125.06 A A A O3' P OP2 A G G 17 18 18 Y 23 -97.47 2.20 105.20 7.73 A A A O3' P OP1 A G G 17 18 18 Y 23 -4.55 0.70 101.30 96.75 A A A C3' C2' C1' C C C 54 54 54 N 23 8.28 1.10 110.50 118.78 A A A O3' P OP1 U C C 63 64 64 Y 23 9.15 1.10 110.50 119.65 A A A O3' P OP2 U G G 76 77 77 Y 23 -14.00 2.20 105.20 91.20 A A A O3' P OP1 U G G 76 77 77 Y 23 -79.16 2.20 105.20 26.04 A A A O3' P OP2 U G G 85 86 86 Y 23 26.69 1.10 110.50 137.19 A A A O3' P OP1 U G G 85 86 86 Y 23 -100.64 2.20 105.20 4.56 A A A O3' P OP2 A G G 115 116 116 Y 25 -18.15 2.20 105.20 87.05 A A A O3' P OP2 G U U 9 10 10 Y 25 -69.57 2.20 105.20 35.63 A A A O3' P OP1 G U U 9 10 10 Y 25 -15.51 2.20 105.20 89.69 A A A O3' P OP2 A U U 34 35 35 Y 25 -72.51 2.20 105.20 32.69 A A A O3' P OP1 A U U 34 35 35 Y 25 32.07 1.10 110.50 142.57 A A A O3' P OP2 C G G 54 55 55 Y 25 -53.76 2.20 105.20 51.44 A A A O3' P OP1 C G G 54 55 55 Y 25 11.09 1.10 110.50 121.59 A A A O3' P OP2 A G G 115 116 116 Y 25 -16.28 2.20 105.20 88.92 A A A O3' P OP1 A G G 115 116 116 Y 27 -21.53 2.20 105.20 83.67 A A A O3' P OP2 A U U 6 7 7 Y 27 -66.05 2.20 105.20 39.15 A A A O3' P OP1 A U U 6 7 7 Y 27 7.37 1.10 110.50 117.87 A A A O3' P OP2 A G G 17 18 18 Y 27 -16.98 2.20 105.20 88.22 A A A O3' P OP2 U C C 47 48 48 Y 27 11.72 1.10 110.50 122.22 A A A O3' P OP1 U C C 47 48 48 Y 27 -89.43 2.20 105.20 15.77 A A A O3' P OP1 U G G 76 77 77 Y 27 -26.74 2.20 105.20 78.46 A A A O3' P OP2 A G G 115 116 116 Y 27 19.31 1.10 110.50 129.81 A A A O3' P OP1 A G G 115 116 116 Y 28 21.32 1.60 113.70 135.02 A A A C2' C3' O3' A A A 6 6 6 N 28 -80.88 2.20 105.20 24.32 A A A O3' P OP2 A U U 6 7 7 Y 28 25.76 1.10 110.50 136.26 A A A O3' P OP1 A U U 6 7 7 Y 28 -67.36 2.20 105.20 37.84 A A A O3' P OP2 G U U 9 10 10 Y 28 31.34 1.10 110.50 141.84 A A A O3' P OP1 G U U 9 10 10 Y 28 -91.99 2.20 105.20 13.21 A A A O3' P OP2 G G G 65 66 66 Y 28 6.73 1.10 110.50 117.23 A A A O3' P OP1 A G G 115 116 116 Y 29 -18.07 2.20 105.20 87.13 A A A O3' P OP2 A U U 6 7 7 Y 29 12.51 1.10 110.50 123.01 A A A O3' P OP1 A U U 6 7 7 Y 29 -76.54 2.20 105.20 28.66 A A A O3' P OP2 G U U 9 10 10 Y 29 27.98 1.10 110.50 138.48 A A A O3' P OP1 G U U 9 10 10 Y 29 23.23 1.10 110.50 133.73 A A A O3' P OP2 A G G 17 18 18 Y 29 -32.44 2.20 105.20 72.76 A A A O3' P OP1 A G G 17 18 18 Y 29 -102.96 2.20 105.20 2.24 A A A O3' P OP2 A U U 34 35 35 Y 29 6.93 1.10 110.50 117.43 A A A O3' P OP1 A U U 34 35 35 Y 29 -14.21 2.20 105.20 90.99 A A A O3' P OP2 G G G 65 66 66 Y 29 9.32 1.10 110.50 119.82 A A A O3' P OP1 G G G 65 66 66 Y 29 -86.72 2.20 105.20 18.48 A A A O3' P OP2 U G G 85 86 86 Y 30 -81.91 2.20 105.20 23.29 A A A O3' P OP1 U C C 12 13 13 Y 30 -18.03 2.20 105.20 87.17 A A A O3' P OP2 A G G 17 18 18 Y 30 -69.76 2.20 105.20 35.44 A A A O3' P OP1 A G G 17 18 18 Y 30 -87.58 2.20 105.20 17.62 A A A O3' P OP2 A U U 36 37 37 Y 30 6.70 1.10 110.50 117.20 A A A O3' P OP1 G G G 50 51 51 Y 30 -20.35 2.20 105.20 84.85 A A A O3' P OP2 G U U 66 67 67 Y 30 14.35 1.10 110.50 124.85 A A A O3' P OP1 G U U 66 67 67 Y 30 17.51 1.10 110.50 128.01 A A A O3' P OP2 U G G 76 77 77 Y 30 -93.55 2.20 105.20 11.65 A A A O3' P OP1 U G G 76 77 77 Y 17 A A C2' C1' A A 61 61 -0.049 0.008 1.526 1.477 N 21 A A O3' P U G 76 77 -0.093 0.012 1.607 1.514 Y N BtCoV SL5 with SL5c truncated 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 127 A N3 C 127 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 127 A O2 C 127 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 127 A N4 C 127 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 126 A N3 C 126 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 126 A O2 C 126 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 126 A N4 C 126 1_555 hydrog WATSON-CRICK A A 3 A N1 A 3 1_555 A U 125 A N3 U 125 1_555 hydrog WATSON-CRICK A A 3 A N6 A 3 1_555 A U 125 A O4 U 125 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 124 A N3 C 124 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 124 A O2 C 124 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 124 A N4 C 124 1_555 hydrog WATSON-CRICK A C 5 A N3 C 5 1_555 A G 123 A N1 G 123 1_555 hydrog WATSON-CRICK A C 5 A N4 C 5 1_555 A G 123 A O6 G 123 1_555 hydrog WATSON-CRICK A C 5 A O2 C 5 1_555 A G 123 A N2 G 123 1_555 hydrog TYPE_5_PAIR A A 6 A N1 A 6 1_555 A A 120 A N6 A 120 1_555 hydrog TYPE_5_PAIR A A 6 A N6 A 6 1_555 A A 120 A N7 A 120 1_555 hydrog WATSON-CRICK A U 7 A N3 U 7 1_555 A A 122 A N1 A 122 1_555 hydrog WATSON-CRICK A U 7 A O4 U 7 1_555 A A 122 A N6 A 122 1_555 hydrog WATSON-CRICK A C 8 A N3 C 8 1_555 A G 121 A N1 G 121 1_555 hydrog WATSON-CRICK A C 8 A N4 C 8 1_555 A G 121 A O6 G 121 1_555 hydrog WATSON-CRICK A C 8 A O2 C 8 1_555 A G 121 A N2 G 121 1_555 hydrog WATSON-CRICK A U 10 A N3 U 10 1_555 A A 120 A N1 A 120 1_555 hydrog WATSON-CRICK A U 10 A O4 U 10 1_555 A A 120 A N6 A 120 1_555 hydrog WATSON-CRICK A G 11 A N1 G 11 1_555 A C 119 A N3 C 119 1_555 hydrog WATSON-CRICK A G 11 A N2 G 11 1_555 A C 119 A O2 C 119 1_555 hydrog WATSON-CRICK A G 11 A O6 G 11 1_555 A C 119 A N4 C 119 1_555 hydrog WATSON-CRICK A C 13 A N3 C 13 1_555 A G 118 A N1 G 118 1_555 hydrog WATSON-CRICK A C 13 A N4 C 13 1_555 A G 118 A O6 G 118 1_555 hydrog WATSON-CRICK A C 13 A O2 C 13 1_555 A G 118 A N2 G 118 1_555 hydrog WATSON-CRICK A U 14 A N3 U 14 1_555 A A 117 A N1 A 117 1_555 hydrog WATSON-CRICK A U 14 A O4 U 14 1_555 A A 117 A N6 A 117 1_555 hydrog WATSON-CRICK A C 15 A N3 C 15 1_555 A G 116 A N1 G 116 1_555 hydrog WATSON-CRICK A C 15 A N4 C 15 1_555 A G 116 A O6 G 116 1_555 hydrog WATSON-CRICK A C 15 A O2 C 15 1_555 A G 116 A N2 G 116 1_555 hydrog A-U PAIR A A 16 A N6 A 16 1_555 A U 112 A O4 U 112 1_555 hydrog A-A MISPAIR A A 16 A N1 A 16 1_555 A A 113 A N6 A 113 1_555 hydrog TYPE_28_PAIR A G 18 A N1 G 18 1_555 A U 114 A O2 U 114 1_555 hydrog TYPE_28_PAIR A G 18 A O6 G 18 1_555 A U 114 A N3 U 114 1_555 hydrog WATSON-CRICK A U 19 A N3 U 19 1_555 A A 113 A N1 A 113 1_555 hydrog WATSON-CRICK A U 19 A O4 U 19 1_555 A A 113 A N6 A 113 1_555 hydrog TYPE_28_PAIR A G 20 A N1 G 20 1_555 A U 112 A O2 U 112 1_555 hydrog TYPE_28_PAIR A G 20 A O6 G 20 1_555 A U 112 A N3 U 112 1_555 hydrog WATSON-CRICK A C 21 A N3 C 21 1_555 A G 111 A N1 G 111 1_555 hydrog WATSON-CRICK A C 21 A N4 C 21 1_555 A G 111 A O6 G 111 1_555 hydrog WATSON-CRICK A C 21 A O2 C 21 1_555 A G 111 A N2 G 111 1_555 hydrog WATSON-CRICK A U 22 A N3 U 22 1_555 A A 110 A N1 A 110 1_555 hydrog WATSON-CRICK A U 22 A O4 U 22 1_555 A A 110 A N6 A 110 1_555 hydrog WATSON-CRICK A U 23 A N3 U 23 1_555 A A 109 A N1 A 109 1_555 hydrog WATSON-CRICK A U 23 A O4 U 23 1_555 A A 109 A N6 A 109 1_555 hydrog WATSON-CRICK A C 24 A N3 C 24 1_555 A G 68 A N1 G 68 1_555 hydrog WATSON-CRICK A C 24 A N4 C 24 1_555 A G 68 A O6 G 68 1_555 hydrog WATSON-CRICK A C 24 A O2 C 24 1_555 A G 68 A N2 G 68 1_555 hydrog WATSON-CRICK A A 25 A N1 A 25 1_555 A U 67 A N3 U 67 1_555 hydrog WATSON-CRICK A A 25 A N6 A 25 1_555 A U 67 A O4 U 67 1_555 hydrog WATSON-CRICK A C 26 A N3 C 26 1_555 A G 65 A N1 G 65 1_555 hydrog WATSON-CRICK A C 26 A N4 C 26 1_555 A G 65 A O6 G 65 1_555 hydrog WATSON-CRICK A C 26 A O2 C 26 1_555 A G 65 A N2 G 65 1_555 hydrog WATSON-CRICK A G 27 A N1 G 27 1_555 A C 64 A N3 C 64 1_555 hydrog WATSON-CRICK A G 27 A N2 G 27 1_555 A C 64 A O2 C 64 1_555 hydrog WATSON-CRICK A G 27 A O6 G 27 1_555 A C 64 A N4 C 64 1_555 hydrog WATSON-CRICK A G 28 A N1 G 28 1_555 A C 59 A N3 C 59 1_555 hydrog WATSON-CRICK A G 28 A N2 G 28 1_555 A C 59 A O2 C 59 1_555 hydrog WATSON-CRICK A G 28 A O6 G 28 1_555 A C 59 A N4 C 59 1_555 hydrog TYPE_28_PAIR A U 29 A N3 U 29 1_555 A G 58 A O6 G 58 1_555 hydrog TYPE_28_PAIR A U 29 A O2 U 29 1_555 A G 58 A N1 G 58 1_555 hydrog WATSON-CRICK A C 30 A N3 C 30 1_555 A G 57 A N1 G 57 1_555 hydrog WATSON-CRICK A C 30 A N4 C 30 1_555 A G 57 A O6 G 57 1_555 hydrog WATSON-CRICK A C 30 A O2 C 30 1_555 A G 57 A N2 G 57 1_555 hydrog WATSON-CRICK A A 31 A N1 A 31 1_555 A U 56 A N3 U 56 1_555 hydrog WATSON-CRICK A A 31 A N6 A 31 1_555 A U 56 A O4 U 56 1_555 hydrog WATSON-CRICK A C 32 A N3 C 32 1_555 A G 55 A N1 G 55 1_555 hydrog WATSON-CRICK A C 32 A N4 C 32 1_555 A G 55 A O6 G 55 1_555 hydrog WATSON-CRICK A C 32 A O2 C 32 1_555 A G 55 A N2 G 55 1_555 hydrog A-C MISPAIR A A 33 A N1 A 33 1_555 A C 54 A N4 C 54 1_555 hydrog A-C MISPAIR A A 34 A N3 A 34 1_555 A C 54 A N4 C 54 1_555 hydrog TYPE_28_PAIR A U 37 A N3 U 37 1_555 A G 53 A O6 G 53 1_555 hydrog TYPE_28_PAIR A U 37 A O2 U 37 1_555 A G 53 A N1 G 53 1_555 hydrog WATSON-CRICK A A 38 A N1 A 38 1_555 A U 52 A N3 U 52 1_555 hydrog WATSON-CRICK A A 38 A N6 A 38 1_555 A U 52 A O4 U 52 1_555 hydrog WATSON-CRICK A C 39 A N3 C 39 1_555 A G 51 A N1 G 51 1_555 hydrog WATSON-CRICK A C 39 A N4 C 39 1_555 A G 51 A O6 G 51 1_555 hydrog WATSON-CRICK A C 39 A O2 C 39 1_555 A G 51 A N2 G 51 1_555 hydrog WATSON-CRICK A C 40 A N3 C 40 1_555 A G 49 A N1 G 49 1_555 hydrog WATSON-CRICK A C 40 A N4 C 40 1_555 A G 49 A O6 G 49 1_555 hydrog WATSON-CRICK A C 40 A O2 C 40 1_555 A G 49 A N2 G 49 1_555 hydrog WATSON-CRICK A G 41 A N1 G 41 1_555 A C 48 A N3 C 48 1_555 hydrog WATSON-CRICK A G 41 A N2 G 41 1_555 A C 48 A O2 C 48 1_555 hydrog WATSON-CRICK A G 41 A O6 G 41 1_555 A C 48 A N4 C 48 1_555 hydrog U-C MISPAIR A U 42 A O2 U 42 1_555 A C 45 A N4 C 45 1_555 hydrog A-G MISPAIR A A 60 A N6 A 60 1_555 A G 96 A N7 G 96 1_555 hydrog A-U PAIR A A 60 A N6 A 60 1_555 A U 97 A O4 U 97 1_555 hydrog A-C MISPAIR A A 61 A N1 A 61 1_555 A C 98 A N4 C 98 1_555 hydrog A-U PAIR A A 61 A N6 A 61 1_555 A U 103 A O4 U 103 1_555 hydrog TYPE_7_PAIR A G 66 A N1 G 66 1_555 A G 93 A N7 G 93 1_555 hydrog TYPE_7_PAIR A G 66 A N2 G 66 1_555 A G 93 A O6 G 93 1_555 hydrog WATSON-CRICK A C 69 A N3 C 69 1_555 A G 95 A N1 G 95 1_555 hydrog WATSON-CRICK A C 69 A N4 C 69 1_555 A G 95 A O6 G 95 1_555 hydrog WATSON-CRICK A C 69 A O2 C 69 1_555 A G 95 A N2 G 95 1_555 hydrog WATSON-CRICK A A 70 A N1 A 70 1_555 A U 94 A N3 U 94 1_555 hydrog WATSON-CRICK A A 70 A N6 A 70 1_555 A U 94 A O4 U 94 1_555 hydrog WATSON-CRICK A C 71 A N3 C 71 1_555 A G 93 A N1 G 93 1_555 hydrog WATSON-CRICK A C 71 A N4 C 71 1_555 A G 93 A O6 G 93 1_555 hydrog WATSON-CRICK A C 71 A O2 C 71 1_555 A G 93 A N2 G 93 1_555 hydrog WATSON-CRICK A A 72 A N1 A 72 1_555 A U 92 A N3 U 92 1_555 hydrog WATSON-CRICK A A 72 A N6 A 72 1_555 A U 92 A O4 U 92 1_555 hydrog TYPE_28_PAIR A U 73 A N3 U 73 1_555 A G 91 A O6 G 91 1_555 hydrog TYPE_28_PAIR A U 73 A O2 U 73 1_555 A G 91 A N1 G 91 1_555 hydrog WATSON-CRICK A C 74 A N3 C 74 1_555 A G 90 A N1 G 90 1_555 hydrog WATSON-CRICK A C 74 A N4 C 74 1_555 A G 90 A O6 G 90 1_555 hydrog WATSON-CRICK A C 74 A O2 C 74 1_555 A G 90 A N2 G 90 1_555 hydrog WATSON-CRICK A A 75 A N1 A 75 1_555 A U 89 A N3 U 89 1_555 hydrog WATSON-CRICK A A 75 A N6 A 75 1_555 A U 89 A O4 U 89 1_555 hydrog WATSON-CRICK A G 77 A N1 G 77 1_555 A C 88 A N3 C 88 1_555 hydrog WATSON-CRICK A G 77 A N2 G 77 1_555 A C 88 A O2 C 88 1_555 hydrog WATSON-CRICK A G 77 A O6 G 77 1_555 A C 88 A N4 C 88 1_555 hydrog TYPE_28_PAIR A U 78 A N3 U 78 1_555 A G 87 A O6 G 87 1_555 hydrog TYPE_28_PAIR A U 78 A O2 U 78 1_555 A G 87 A N1 G 87 1_555 hydrog WATSON-CRICK A C 79 A N3 C 79 1_555 A G 86 A N1 G 86 1_555 hydrog WATSON-CRICK A C 79 A N4 C 79 1_555 A G 86 A O6 G 86 1_555 hydrog WATSON-CRICK A C 79 A O2 C 79 1_555 A G 86 A N2 G 86 1_555 hydrog WATSON-CRICK A G 96 A N1 G 96 1_555 A C 108 A N3 C 108 1_555 hydrog WATSON-CRICK A G 96 A N2 G 96 1_555 A C 108 A O2 C 108 1_555 hydrog WATSON-CRICK A G 96 A O6 G 96 1_555 A C 108 A N4 C 108 1_555 hydrog U-G MISPAIR A U 97 A O4 U 97 1_555 A G 104 A N2 G 104 1_555 hydrog WATSON-CRICK A U 97 A N3 U 97 1_555 A A 107 A N1 A 107 1_555 hydrog WATSON-CRICK A U 97 A O4 U 97 1_555 A A 107 A N6 A 107 1_555 hydrog WATSON-CRICK A C 98 A N3 C 98 1_555 A G 106 A N1 G 106 1_555 hydrog WATSON-CRICK A C 98 A N4 C 98 1_555 A G 106 A O6 G 106 1_555 hydrog WATSON-CRICK A C 98 A O2 C 98 1_555 A G 106 A N2 G 106 1_555 hydrog WATSON-CRICK A A 99 A N1 A 99 1_555 A U 103 A N3 U 103 1_555 hydrog WATSON-CRICK A A 99 A N6 A 99 1_555 A U 103 A O4 U 103 1_555 RNA RNA, SL5, BtCoV NC_009020.1 GB 1 187 126030122 AGAGCAUCGUGUCUCAAGUGCUUCACGGUCACAAUAUACCGUUUCGUCGGGUGCGUGGCAAUUCGGUGCACAUCAUGUCU UUCGUGGCUGGUGUGGCUCCUCAAGGUGCGAGGGGCAAGUAUAGAGCAGAGCUCA 187 321 9YXA 1 127 126030122 A 1 1 127 1 A conflict G 1 9YXA A 126030122 GB 187 1 1 C deletion 9YXA A 126030122 GB 283 1 U deletion 9YXA A 126030122 GB 284 1 C deletion 9YXA A 126030122 GB 285 1 C deletion 9YXA A 126030122 GB 286 1 G deletion 9YXA A 126030122 GB 298 1 G deletion 9YXA A 126030122 GB 299 1 G deletion 9YXA A 126030122 GB 300 1 G deletion 9YXA A 126030122 GB 301 1 A conflict C 127 9YXA A 126030122 GB 321 127