1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0002-9354-2276 Weidle, C. 0000-0002-9977-2785 Favor, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N O N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing To Be Published 0353 De novo design of RNA and nucleoprotein complexes 0000-0002-9977-2785 0009-0009-4982-6050 0000-0002-9354-2276 0009-0007-2703-6512 0000-0001-7467-8373 0000-0001-6425-8391 0009-0005-1929-3952 0000-0002-6000-0999 0000-0003-4297-7824 0000-0001-7896-6217 10.2210/pdb9yn7/pdb pdb_00009yn7 FOURIER SPACE Non Uniform Refinement 9YN7 1 140174 6.63 FSC 0.143 CUT-OFF POINT REL 2025-10-10 RCSB 2026-10-14 2026-10-14 De Novo RNA Pseudocycle, pC2-240-0 10 mM Magnesium Chloride, 8.0 10 mM MgCl2 Magnesium Chloride Patch CTF 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 1 De Novo RNA Pseudocycle, pC2-240-0 0 RECOMBINANT COMPLEX NO MEGADALTONS 0.07715999999999999 32630 synthetic construct 905931 in vitro transcription vector pT7-TP(deltai) PARTICLE 1 1 SINGLE PARTICLE 5.0 48.739 GATAN K3 (6k x 4k) 5 8030 300 COMA FREE 50.0 NITROGEN FIELD EMISSION GUN FLOOD BEAM TFS KRIOS BRIGHT FIELD 2.7 1800 800 105000 FEI TITAN KRIOS AUTOGRID HOLDER 1 GIF Bioquantum particles from template picking 5482343 15 COPPER 300 C-flat-2/2 9YN7 C1 PARTICLE SELECTION 1 cryoSPARC IMAGE ACQUISITION 1 SerialEM MASKING CTF CORRECTION 1 cryoSPARC LAYERLINE INDEXING DIFFRACTION INDEXING MODEL FITTING MODEL REFINEMENT OTHER INITIAL EULER ASSIGNMENT 1 cryoSPARC FINAL EULER ASSIGNMENT 1 cryoSPARC CLASSIFICATION 1 cryoSPARC RECONSTRUCTION 1 cryoSPARC 43 10 mM MgCl2 NO NO NO YES 295.15 ETHANE 9YN7 100 FEI VITROBOT MARK IV 78390.711 pC2-240-04: RNA (240-MER) 1 syn polymer no no GGAAAGCUCCCGUCCCAGCCCGACGGGGGUAUAAGGGCGCCCGUAGGCGCACCUCGAUGACCAGUCGAGGUUGCGCCAGC CGGGGGGCGAUGGCCCCUGACCACACGCAGGGACAAUGCCCCAAAGGACAUGUCCCAGCCCCCGUCGGGUAUAAGGGCGC CCGUAGGCGCACCUCCAUGACCAGUGGAGGUAGCGCCAGUCAGGGGCCGAUGCCCCCCGGCCAUACGUAGGGACGAGGGC GA GGAAAGCUCCCGUCCCAGCCCGACGGGGGUAUAAGGGCGCCCGUAGGCGCACCUCGAUGACCAGUCGAGGUUGCGCCAGC CGGGGGGCGAUGGCCCCUGACCACACGCAGGGACAAUGCCCCAAAGGACAUGUCCCAGCCCCCGUCGGGUAUAAGGGCGC CCGUAGGCGCACCUCCAUGACCAGUGGAGGUAGCGCCAGUCAGGGGCCGAUGCCCCCCGGCCAUACGUAGGGACGAGGGC GA A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n -21.346 A 2 A 239 -24.533 A_A2:G239_A 1 26.757 -7.101 -0.814 -4.163 9.480 1 19 A 4 A 238 0.573 A_G4:C238_A 2 -3.142 -0.263 0.275 -0.008 11.691 1 19 A 5 A 237 -0.131 A_C5:G237_A 3 -12.651 0.095 -0.103 -0.069 0.344 1 A 6 A 236 11.961 A_U6:G236_A 4 -12.254 0.884 0.234 0.289 2.515 1 19 A 7 A 235 -3.326 A_C7:G235_A 5 -9.088 0.053 -0.213 -0.164 -4.211 1 A 8 A 234 4.322 A_C8:A234_A 6 -15.513 -1.667 -0.255 0.291 1.078 1 19 A 9 A 233 0.653 A_C9:G233_A 7 -5.614 0.104 -0.017 -0.046 -0.307 1 19 A 10 A 232 2.125 A_G10:C232_A 8 -8.941 -0.168 -0.002 -0.057 3.510 1 20 A 11 A 231 1.453 A_U11:A231_A 9 -13.233 -0.108 -0.183 -0.089 0.618 1 19 A 12 A 230 -0.098 A_C12:G230_A 10 -13.127 0.051 -0.048 -0.123 -6.036 1 19 A 13 A 229 -0.314 A_C13:G229_A 11 -14.878 0.225 0.046 -0.197 -12.873 1 19 A 14 A 228 -3.917 A_C14:G228_A 12 -11.604 0.308 0.156 -0.210 8.262 1 28 A 16 A 148 -6.208 A_G16:U148_A 13 -5.731 -4.499 -0.142 -1.041 9.981 1 19 A 17 A 147 -4.353 A_C17:G147_A 14 -8.024 -0.006 -0.089 -0.079 5.539 1 19 A 18 A 146 -0.523 A_C18:G146_A 15 -9.928 0.135 -0.110 -0.150 -0.507 1 19 A 19 A 145 0.508 A_C19:G145_A 16 -9.165 -0.322 -0.041 -0.018 -2.879 1 19 A 20 A 144 -0.379 A_G20:C144_A 17 -8.841 -0.145 0.034 -0.087 0.864 1 20 A 21 A 143 -1.003 A_A21:U143_A 18 -12.361 -0.028 -0.057 -0.039 4.095 1 19 A 22 A 142 0.055 A_C22:G142_A 19 -12.889 0.094 -0.005 -0.069 -0.478 1 19 A 23 A 141 0.145 A_G23:C141_A 20 -10.868 -0.013 -0.039 -0.054 -0.456 1 19 A 24 A 140 -0.767 A_G24:C140_A 21 -9.132 -0.067 -0.101 -0.063 -2.080 1 19 A 25 A 139 0.612 A_G25:C139_A 22 -9.178 -0.101 -0.082 -0.062 -1.750 1 19 A 26 A 138 0.416 A_G26:C138_A 23 -10.678 -0.053 -0.064 -0.048 -9.014 1 19 A 27 A 137 0.339 A_G27:C137_A 24 -16.029 -0.061 -0.114 -0.003 -13.493 1 28 A 28 A 136 -0.566 A_U28:G136_A 25 -13.408 2.263 0.329 -0.320 -32.157 1 A 29 A 135 -36.919 A_A29:A135_A 26 -31.933 1.513 0.920 1.511 -3.068 1 19 A 108 A 134 -1.251 A_G108:C134_A 27 -6.129 -0.023 -0.088 -0.071 -0.307 1 19 A 109 A 133 -0.636 A_G109:C133_A 28 -5.307 -0.108 -0.118 -0.090 -1.241 1 19 A 110 A 132 -0.715 A_G110:C132_A 29 -7.083 -0.086 -0.118 -0.091 0.168 1 20 A 111 A 131 1.682 A_A111:U131_A 30 -13.093 0.090 -0.084 -0.050 1.368 1 19 A 112 A 130 0.109 A_C112:G130_A 31 -11.510 0.093 0.101 -0.053 -3.178 A 113 A 129 3.365 A_A113:U129_A 32 -21.433 1.223 -0.153 0.762 14.341 1 20 A 115 A 128 1.468 A_U115:A128_A 33 -42.002 -0.455 0.377 0.090 -15.861 1 19 A 116 A 127 -5.989 A_G116:C127_A 34 -34.167 -0.031 0.113 -0.203 -4.566 1 19 A 117 A 125 -4.161 A_C117:G125_A 35 -9.869 0.020 0.028 0.010 -1.773 1 19 A 118 A 124 -0.945 A_C118:G124_A 36 -0.032 0.117 0.127 -0.086 -30.043 5 A 32 A 161 43.295 A_A32:G161_A 37 18.858 -7.358 -0.810 -1.157 -2.957 1 19 A 33 A 160 0.808 A_G33:C160_A 38 3.488 -0.079 -0.142 -0.018 1.037 1 19 A 34 A 159 1.402 A_G34:C159_A 39 -6.431 -0.095 -0.125 -0.005 0.538 1 19 A 35 A 158 -0.142 A_G35:C158_A 40 -8.636 -0.175 -0.059 -0.068 2.084 1 19 A 36 A 157 0.019 A_C36:G157_A 41 -11.924 0.133 -0.043 -0.083 -4.772 1 19 A 37 A 156 -0.319 A_G37:C156_A 42 -12.302 -0.120 -0.023 -0.081 -2.386 1 19 A 38 A 155 -0.775 A_C38:G155_A 43 -10.770 0.185 0.073 -0.092 -2.905 1 19 A 39 A 154 0.420 A_C39:G154_A 44 -11.413 0.100 0.081 -0.068 -1.508 1 19 A 40 A 153 -1.751 A_C40:G153_A 45 -11.877 -0.377 0.054 0.051 -11.646 A 41 A 152 -2.174 A_G41:A152_A 46 -20.062 2.105 -0.445 1.917 -46.090 A 43 A 221 103.678 A_A43:A221_A 47 45.377 -2.202 0.047 -6.862 3.286 1 20 A 63 A 55 5.297 A_U63:A55_A 48 -5.758 -0.083 -0.263 -0.173 2.016 1 19 A 64 A 54 -1.431 A_C64:G54_A 49 -9.993 -0.012 -0.093 -0.204 -3.196 1 19 A 65 A 53 -1.537 A_G65:C53_A 50 -9.916 -0.048 0.013 -0.097 -0.404 1 20 A 66 A 52 -0.512 A_A66:U52_A 51 -12.565 0.103 -0.100 -0.039 1.867 1 19 A 67 A 51 -0.912 A_G67:C51_A 52 -12.321 -0.112 0.022 -0.188 -5.894 1 19 A 68 A 50 0.775 A_G68:C50_A 53 -19.425 -0.077 -0.035 -0.088 -15.064 A 69 A 49 12.061 A_U69:A49_A 54 -19.900 1.072 0.395 0.723 -0.186 1 19 A 71 A 48 1.206 A_G71:C48_A 55 -9.136 -0.110 0.085 -0.004 3.521 1 19 A 72 A 47 1.504 A_C72:G47_A 56 -14.133 0.131 -0.031 -0.043 -0.700 1 19 A 73 A 46 0.568 A_G73:C46_A 57 -13.182 -0.090 -0.039 -0.040 3.469 1 19 A 74 A 45 1.371 A_C74:G45_A 58 -12.157 0.403 -0.093 -0.112 0.638 1 19 A 75 A 44 2.784 A_C75:G44_A 59 -12.932 0.105 0.003 -0.099 20.334 A 76 A 220 -16.773 A_A76:C220_A 60 -23.465 -2.064 0.279 -0.038 5.061 1 19 A 77 A 219 -2.643 A_G77:C219_A 61 -17.822 -0.163 0.192 -0.108 3.245 1 19 A 78 A 218 -0.840 A_C78:G218_A 62 -13.393 0.143 0.008 -0.099 3.747 1 19 A 79 A 217 -1.531 A_C79:G217_A 63 -12.239 -0.064 -0.022 -0.085 -0.013 1 19 A 80 A 216 0.816 A_G80:C216_A 64 -10.617 -0.050 -0.031 -0.048 -0.724 1 19 A 81 A 215 1.406 A_G81:C215_A 65 -9.252 -0.111 -0.060 -0.052 -0.021 1 19 A 82 A 214 1.387 A_G82:C214_A 66 -10.939 -0.052 -0.059 -0.028 -0.423 1 19 A 83 A 213 0.103 A_G83:C213_A 67 -10.957 -0.027 -0.104 -0.040 0.082 1 19 A 84 A 212 -0.124 A_G84:C212_A 68 -10.821 -0.034 -0.071 -0.045 0.393 1 19 A 85 A 211 0.697 A_G85:C211_A 69 -13.523 -0.171 -0.021 -0.052 -0.349 1 19 A 86 A 210 0.798 A_C86:G210_A 70 -18.647 0.323 0.024 -0.043 17.380 A 87 A 209 27.128 A_G87:U209_A 71 -23.665 4.319 1.116 0.974 6.961 1 A 91 A 205 10.328 A_G91:C205_A 72 -19.078 -0.726 0.701 0.229 7.931 1 19 A 92 A 204 2.092 A_C92:G204_A 73 -12.804 0.153 0.065 -0.018 3.882 1 19 A 93 A 203 2.173 A_C93:G203_A 74 -12.762 0.042 -0.018 -0.038 2.558 1 19 A 94 A 202 1.240 A_C94:G202_A 75 -8.859 0.024 -0.064 -0.045 2.373 1 19 A 95 A 201 -0.997 A_C95:G201_A 76 -10.270 0.076 -0.152 -0.076 0.848 1 20 A 96 A 200 -1.990 A_U96:A200_A 77 -14.149 0.029 -0.243 -0.085 -5.262 1 19 A 97 A 199 -1.563 A_G97:C199_A 78 -10.565 -0.020 -0.030 -0.109 -1.022 1 20 A 98 A 198 2.491 A_A98:U198_A 79 -15.736 0.074 0.114 -0.072 3.994 1 19 A 99 A 197 -1.367 A_C99:G197_A 80 -9.865 0.231 0.241 -0.075 -17.341 1 A 163 A 196 1.236 A_A163:A196_A 81 -21.281 -1.417 -0.838 1.107 -14.159 1 19 A 164 A 195 -3.509 A_G164:C195_A 82 -5.613 0.117 -0.132 0.015 -3.689 1 19 A 165 A 194 -0.150 A_G165:C194_A 83 -11.882 -0.164 0.040 -0.013 2.777 1 19 A 166 A 193 1.176 A_C166:G193_A 84 -13.410 0.094 0.095 -0.016 -2.789 1 19 A 167 A 192 -0.489 A_G167:C192_A 85 -16.239 -0.135 0.065 -0.080 -1.370 1 19 A 168 A 191 -4.400 A_C168:G191_A 86 -12.330 0.255 0.051 -0.136 15.244 A 169 A 189 0.162 A_A169:U189_A 87 -18.338 -0.787 0.099 0.609 7.457 1 19 A 170 A 188 -1.305 A_C170:G188_A 88 -15.218 0.128 -0.074 -0.062 -0.506 1 19 A 171 A 187 -0.650 A_C171:G187_A 89 -13.250 0.070 -0.025 -0.089 -3.344 1 20 A 172 A 186 1.382 A_U172:A186_A 90 -10.391 0.027 -0.027 -0.096 2.560 1 19 A 173 A 185 -0.011 A_C173:G185_A 91 -8.456 0.088 -0.020 -0.096 3.731 1 19 A 174 A 184 -1.212 A_C174:G184_A 92 -6.282 -0.318 -0.076 -0.053 -9.171 1 20 A 175 A 183 -5.996 A_A175:U183_A 93 -12.303 0.009 -0.207 -0.002 -6.534 1 28 A 176 A 182 -7.308 A_U176:G182_A 94 -7.153 2.112 -0.072 -0.331 11.164 A 177 A 181 -27.085 A_G177:A181_A 95 0.252 8.058 0.670 -3.664 4.672 71.238 A A 2 4 6.374 A A 239 238 4.855 7.366 0.399 -1.623 AA_A2G4:C238G239_AA 1 15.941 -13.793 69.319 -1.768 0.468 3.448 30.661 A A 4 5 -0.686 A A 238 237 3.428 -0.363 -0.134 -1.524 AA_G4C5:G237C238_AA 2 -1.028 1.945 30.642 -2.806 0.041 3.119 34.439 A A 5 6 13.956 A A 237 236 3.647 8.182 0.657 -1.647 AA_C5U6:G236G237_AA 3 -2.273 3.877 33.406 -4.121 -1.481 2.922 29.779 A A 6 7 12.137 A A 236 235 3.294 6.193 -1.513 -1.235 AA_U6C7:G235G236_AA 4 0.990 -1.940 29.126 -3.647 3.143 2.920 23.663 A A 7 8 17.941 A A 235 234 3.512 7.241 0.680 -1.482 AA_C7C8:A234G235_AA 5 0.766 -1.898 22.530 -6.041 -1.402 3.438 38.170 A A 8 9 -1.074 A A 234 233 3.439 -0.702 0.060 -1.073 AA_C8C9:G233A234_AA 6 -3.515 5.383 38.008 -1.548 -0.559 3.075 27.233 A A 9 10 12.269 A A 233 232 3.465 5.735 0.000 -1.522 AA_C9G10:C232G233_AA 7 -0.229 0.490 26.632 -4.684 -0.057 3.137 31.903 A A 10 11 8.385 A A 232 231 3.342 4.594 -0.552 -1.205 AA_G10U11:A231C232_AA 8 0.168 -0.306 31.579 -3.024 1.034 2.653 34.353 A A 11 12 22.542 A A 231 230 3.361 12.992 -0.274 -1.306 AA_U11C12:G230A231_AA 9 -2.206 3.828 31.795 -4.158 0.133 2.872 35.529 A A 12 13 19.558 A A 230 229 3.429 11.724 -0.081 -1.166 AA_C12C13:G229G230_AA 10 0.781 -1.303 33.589 -3.611 0.246 3.180 39.165 A A 13 14 10.705 A A 229 228 3.426 7.136 0.059 -1.086 AA_C13C14:G228G229_AA 11 2.197 -3.296 38.475 -2.490 0.181 6.223 78.566 A A 14 16 7.359 A A 228 148 6.753 9.279 3.212 -0.373 AA_C14G16:U148G228_AA 12 -11.751 9.320 77.354 -0.808 -3.186 3.280 49.767 A A 16 17 10.231 A A 148 147 3.421 8.558 -0.465 -0.773 AA_G16C17:G147U148_AA 13 -5.166 6.175 48.816 -1.567 0.161 3.273 34.278 A A 17 18 8.152 A A 147 146 3.489 4.790 0.239 -1.323 AA_C17C18:G146G147_AA 14 -0.587 0.999 33.947 -3.026 -0.501 3.025 31.765 A A 18 19 12.566 A A 146 145 3.437 6.826 0.111 -1.589 AA_C18C19:G145G146_AA 15 -0.645 1.187 31.034 -4.155 -0.320 2.926 31.505 A A 19 20 15.429 A A 145 144 3.386 8.282 -0.338 -1.386 AA_C19G20:C144G145_AA 16 -1.068 1.990 30.405 -4.070 0.426 2.735 31.062 A A 20 21 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0.236 30.235 -3.856 0.131 3.170 33.473 A A 174 175 13.876 A A 184 183 3.675 7.916 -0.246 -1.689 AA_C174A175:U183G184_AA 88 1.796 -3.148 32.501 -4.320 0.741 3.205 41.272 A A 175 176 4.766 A A 183 182 3.316 3.355 -0.229 -1.218 AA_A175U176:G182U183_AA 89 1.028 -1.460 41.129 -2.089 0.435 2.916 51.119 A A 176 177 6.270 A A 182 181 3.005 5.401 -1.705 -1.000 AA_U176G177:A181G182_AA 90 -0.811 0.941 50.846 -1.498 1.925 repository Initial release repository Initial release 1 0 2026-10-14 1 0 2026-10-14 United States Bill & Melinda Gates Foundation INV-043758 United States Howard Hughes Medical Institute (HHMI) United States National Science Foundation (NSF, United States) CHE-2226466 United States National Institutes of Health/National Cancer Institute (NIH/NCI) NIGMS GM148166 dabaker@uw.edu 0000-0002-9977-2785 David Baker principal investigator/group leader De Novo RNA Pseudocycle, pC2-240-0 N RCSB RNA-Puzzles Y RCSB 2025-10-10 REL 32630 synthetic construct sample 1 242 N n 1 -1 A n 2 0 A A 1 n 3 A 1 A A 2 n 4 A 2 A A 3 n 5 A 3 A G 4 n 6 G 4 A C 5 n 7 C 5 A U 6 n 8 U 6 A C 7 n 9 C 7 A C 8 n 10 C 8 A C 9 n 11 C 9 A G 10 n 12 G 10 A U 11 n 13 U 11 A C 12 n 14 C 12 A C 13 n 15 C 13 A C 14 n 16 C 14 A A 15 n 17 A 15 A G 16 n 18 G 16 A C 17 n 19 C 17 A C 18 n 20 C 18 A C 19 n 21 C 19 A G 20 n 22 G 20 A A 21 n 23 A 21 A C 22 n 24 C 22 A G 23 n 25 G 23 A G 24 n 26 G 24 A G 25 n 27 G 25 A G 26 n 28 G 26 A G 27 n 29 G 27 A U 28 n 30 U 28 A A 29 n 31 A 29 A U 30 n 32 U 30 A A 31 n 33 A 31 A A 32 n 34 A 32 A G 33 n 35 G 33 A G 34 n 36 G 34 A G 35 n 37 G 35 A C 36 n 38 C 36 A G 37 n 39 G 37 A C 38 n 40 C 38 A C 39 n 41 C 39 A C 40 n 42 C 40 A G 41 n 43 G 41 A U 42 n 44 U 42 A A 43 n 45 A 43 A G 44 n 46 G 44 A G 45 n 47 G 45 A C 46 n 48 C 46 A G 47 n 49 G 47 A C 48 n 50 C 48 A A 49 n 51 A 49 A C 50 n 52 C 50 A C 51 n 53 C 51 A U 52 n 54 U 52 A C 53 n 55 C 53 A G 54 n 56 G 54 A A 55 n 57 A 55 A U 56 n 58 U 56 A G 57 n 59 G 57 A A 58 n 60 A 58 A C 59 n 61 C 59 A C 60 n 62 C 60 A A 61 n 63 A 61 A G 62 n 64 G 62 A U 63 n 65 U 63 A C 64 n 66 C 64 A G 65 n 67 G 65 A A 66 n 68 A 66 A G 67 n 69 G 67 A G 68 n 70 G 68 A U 69 n 71 U 69 A U 70 n 72 U 70 A G 71 n 73 G 71 A C 72 n 74 C 72 A G 73 n 75 G 73 A C 74 n 76 C 74 A C 75 n 77 C 75 A A 76 n 78 A 76 A G 77 n 79 G 77 A C 78 n 80 C 78 A C 79 n 81 C 79 A G 80 n 82 G 80 A G 81 n 83 G 81 A G 82 n 84 G 82 A G 83 n 85 G 83 A G 84 n 86 G 84 A G 85 n 87 G 85 A C 86 n 88 C 86 A G 87 n 89 G 87 A A 88 n 90 A 88 A U 89 n 91 U 89 A G 90 n 92 G 90 A G 91 n 93 G 91 A C 92 n 94 C 92 A C 93 n 95 C 93 A C 94 n 96 C 94 A C 95 n 97 C 95 A U 96 n 98 U 96 A G 97 n 99 G 97 A A 98 n 100 A 98 A C 99 n 101 C 99 A C 100 n 102 C 100 A A 101 n 103 A 101 A C 102 n 104 C 102 A A 103 n 105 A 103 A C 104 n 106 C 104 A G 105 n 107 G 105 A C 106 n 108 C 106 A A 107 n 109 A 107 A G 108 n 110 G 108 A G 109 n 111 G 109 A G 110 n 112 G 110 A A 111 n 113 A 111 A C 112 n 114 C 112 A A 113 n 115 A 113 A A 114 n 116 A 114 A U 115 n 117 U 115 A G 116 n 118 G 116 A C 117 n 119 C 117 A C 118 n 120 C 118 A C 119 n 121 C 119 A C 120 n 122 C 120 A A 121 n 123 A 121 A A 122 n 124 A 122 A A 123 n 125 A 123 A G 124 n 126 G 124 A G 125 n 127 G 125 A A 126 n 128 A 126 A C 127 n 129 C 127 A A 128 n 130 A 128 A U 129 n 131 U 129 A G 130 n 132 G 130 A U 131 n 133 U 131 A C 132 n 134 C 132 A C 133 n 135 C 133 A C 134 n 136 C 134 A A 135 n 137 A 135 A G 136 n 138 G 136 A C 137 n 139 C 137 A C 138 n 140 C 138 A C 139 n 141 C 139 A C 140 n 142 C 140 A C 141 n 143 C 141 A G 142 n 144 G 142 A U 143 n 145 U 143 A C 144 n 146 C 144 A G 145 n 147 G 145 A G 146 n 148 G 146 A G 147 n 149 G 147 A U 148 n 150 U 148 A A 149 n 151 A 149 A U 150 n 152 U 150 A A 151 n 153 A 151 A A 152 n 154 A 152 A G 153 n 155 G 153 A G 154 n 156 G 154 A G 155 n 157 G 155 A C 156 n 158 C 156 A G 157 n 159 G 157 A C 158 n 160 C 158 A C 159 n 161 C 159 A C 160 n 162 C 160 A G 161 n 163 G 161 A U 162 n 164 U 162 A A 163 n 165 A 163 A G 164 n 166 G 164 A G 165 n 167 G 165 A C 166 n 168 C 166 A G 167 n 169 G 167 A C 168 n 170 C 168 A A 169 n 171 A 169 A C 170 n 172 C 170 A C 171 n 173 C 171 A U 172 n 174 U 172 A C 173 n 175 C 173 A C 174 n 176 C 174 A A 175 n 177 A 175 A U 176 n 178 U 176 A G 177 n 179 G 177 A A 178 n 180 A 178 A C 179 n 181 C 179 A C 180 n 182 C 180 A A 181 n 183 A 181 A G 182 n 184 G 182 A U 183 n 185 U 183 A G 184 n 186 G 184 A G 185 n 187 G 185 A A 186 n 188 A 186 A G 187 n 189 G 187 A G 188 n 190 G 188 A U 189 n 191 U 189 A A 190 n 192 A 190 A G 191 n 193 G 191 A C 192 n 194 C 192 A G 193 n 195 G 193 A C 194 n 196 C 194 A C 195 n 197 C 195 A A 196 n 198 A 196 A G 197 n 199 G 197 A U 198 n 200 U 198 A C 199 n 201 C 199 A A 200 n 202 A 200 A G 201 n 203 G 201 A G 202 n 204 G 202 A G 203 n 205 G 203 A G 204 n 206 G 204 A C 205 n 207 C 205 A C 206 n 208 C 206 A G 207 n 209 G 207 A A 208 n 210 A 208 A U 209 n 211 U 209 A G 210 n 212 G 210 A C 211 n 213 C 211 A C 212 n 214 C 212 A C 213 n 215 C 213 A C 214 n 216 C 214 A C 215 n 217 C 215 A C 216 n 218 C 216 A G 217 n 219 G 217 A G 218 n 220 G 218 A C 219 n 221 C 219 A C 220 n 222 C 220 A A 221 n 223 A 221 A U 222 n 224 U 222 A A 223 n 225 A 223 A C 224 n 226 C 224 A G 225 n 227 G 225 A U 226 n 228 U 226 A A 227 n 229 A 227 A G 228 n 230 G 228 A G 229 n 231 G 229 A G 230 n 232 G 230 A A 231 n 233 A 231 A C 232 n 234 C 232 A G 233 n 235 G 233 A A 234 n 236 A 234 A G 235 n 237 G 235 A G 236 n 238 G 236 A G 237 n 239 G 237 A C 238 n 240 C 238 A G 239 n 241 G 239 A A 240 n 242 A 240 A author_and_software_defined_assembly 1 monomeric not applicable electron microscopy 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 1.0 1_555 x,y,z identity operation 0.0 0.0 0.0 1 A G -1 A G 1 1 Y 1 A G 0 A G 2 1 Y 1 A A HO2' HO2' C A 5 66 1.23 1 A G 68 0.068 SIDE CHAIN 1 A C 86 0.082 SIDE CHAIN 1 A G 90 0.080 SIDE CHAIN 1 A A 107 0.057 SIDE CHAIN 1 A G 125 0.065 SIDE CHAIN 1 A A 163 0.089 SIDE CHAIN 1 A G 188 0.066 SIDE CHAIN 1 A G 197 0.077 SIDE CHAIN 1 A G 207 0.074 SIDE CHAIN 1 A C 219 0.069 SIDE CHAIN 1 -3.18 0.50 129.30 126.12 A A A N1 C2 N3 A A A 1 1 1 N 1 3.43 0.50 110.60 114.03 A A A C2 N3 C4 A A A 1 1 1 N 1 -3.52 0.50 117.00 113.48 A A A C4 C5 C6 A A A 1 1 1 N 1 3.60 0.50 117.70 121.30 A A A C5 C6 N1 A A A 1 1 1 N 1 -4.00 0.60 118.60 114.60 A A A N1 C6 N6 A A A 1 1 1 N 1 8.38 1.20 119.70 128.08 A A A C3' O3' P A A A 1 1 2 Y 1 -3.63 0.40 105.80 102.17 A A A C8 N9 C4 A A A 3 3 3 N 1 2.52 0.40 105.80 108.32 A A A N9 C4 C5 A A A 3 3 3 N 1 -4.67 0.70 121.90 117.23 A A A N3 C2 O2 C C C 19 19 19 N 1 7.97 1.20 119.70 127.67 A A A C3' O3' P A A U 29 29 30 Y 1 -2.43 0.40 120.30 117.87 A A A C6 N1 C2 C C C 40 40 40 N 1 -6.19 0.70 121.90 115.71 A A A N3 C2 O2 C C C 40 40 40 N 1 10.46 1.20 119.70 130.16 A A A C3' O3' P G G U 41 41 42 Y 1 8.83 1.20 119.70 128.53 A A A C3' O3' P A A G 43 43 44 Y 1 -6.50 0.90 105.70 99.20 A A A O5' P OP2 C C C 59 59 59 N 1 9.16 1.20 119.70 128.86 A A A C3' O3' P U U G 70 70 71 Y 1 10.16 1.20 119.70 129.86 A A A C3' O3' P C C A 100 100 101 Y 1 4.16 0.60 118.60 122.76 A A A N1 C6 N6 A A A 128 128 128 N 1 7.58 1.20 119.70 127.28 A A A C3' O3' P A A U 149 149 150 Y 1 10.42 1.20 119.70 130.12 A A A C3' O3' P U U A 150 150 151 Y 1 -4.71 0.70 121.90 117.19 A A A N3 C2 O2 C C C 174 174 174 N 1 10.91 1.20 119.70 130.61 A A A C3' O3' P A A G 190 190 191 Y 1 3.02 0.50 129.30 132.32 A A A N1 C2 N3 A A A 196 196 196 N 1 -3.65 0.50 110.60 106.95 A A A C2 N3 C4 A A A 196 196 196 N 1 9.59 1.20 119.70 129.29 A A A C3' O3' P G G A 207 207 208 Y 1 8.29 1.20 119.70 127.99 A A A C3' O3' P A A U 208 208 209 Y 1 8.42 1.20 119.70 128.12 A A A C3' O3' P C C A 220 220 221 Y 1 8.67 1.20 119.70 128.37 A A A C3' O3' P U U A 222 222 223 Y 1 9.21 1.20 119.70 128.91 A A A C3' O3' P A A C 223 223 224 Y 1 7.83 1.20 119.70 127.53 A A A C3' O3' P C C G 224 224 225 Y 1 10.15 1.20 119.70 129.85 A A A C3' O3' P G G A 239 239 240 Y 1 -3.26 0.50 129.30 126.04 A A A N1 C2 N3 A A A 240 240 240 N 1 3.68 0.50 110.60 114.28 A A A C2 N3 C4 A A A 240 240 240 N 1 -3.15 0.50 117.00 113.85 A A A C4 C5 C6 A A A 240 240 240 N 1 3.63 0.50 117.70 121.33 A A A C5 C6 N1 A A A 240 240 240 N 1 -4.07 0.60 118.60 114.53 A A A N1 C6 N6 A A A 240 240 240 N 1 A A N3 C4 A A 1 1 0.060 0.006 1.344 1.404 N 1 A A C4 C5 A A 1 1 0.050 0.007 1.383 1.433 N 1 A A C5 C6 A A 1 1 0.073 0.009 1.406 1.479 N 1 A A N9 C4 A A 163 163 -0.050 0.006 1.374 1.324 N 1 A A N3 C4 A A 196 196 -0.040 0.006 1.344 1.304 N 1 A A C6 N1 A A 196 196 -0.054 0.007 1.351 1.297 N 1 A A C5 N7 A A 196 196 -0.051 0.006 1.388 1.337 N 1 A A N9 C4 A A 196 196 -0.036 0.006 1.374 1.338 N 1 A A C2 N3 A A 240 240 0.055 0.009 1.331 1.386 N 1 A A N3 C4 A A 240 240 0.061 0.006 1.344 1.405 N 1 A A C4 C5 A A 240 240 0.050 0.007 1.383 1.433 N 1 A A C5 C6 A A 240 240 0.075 0.009 1.406 1.481 N N MODEL GENERATED BY ROSETTA VERSION 2025.37+release.df75a9c48e De Novo RNA Pseudocycle, pC2-240-0 1 N N hydrog A-G MISPAIR A A 2 A N7 A 4 1_555 A G 239 A N2 G 241 1_555 hydrog A-G MISPAIR A A 3 A N6 A 5 1_555 A G 239 A N3 G 241 1_555 hydrog WATSON-CRICK A G 4 A N1 G 6 1_555 A C 238 A N3 C 240 1_555 hydrog WATSON-CRICK A G 4 A N2 G 6 1_555 A C 238 A O2 C 240 1_555 hydrog WATSON-CRICK A G 4 A O6 G 6 1_555 A C 238 A N4 C 240 1_555 hydrog WATSON-CRICK A C 5 A N3 C 7 1_555 A G 237 A N1 G 239 1_555 hydrog WATSON-CRICK A C 5 A N4 C 7 1_555 A G 237 A O6 G 239 1_555 hydrog WATSON-CRICK A C 5 A O2 C 7 1_555 A G 237 A N2 G 239 1_555 hydrog U-G MISPAIR A U 6 A O2 U 8 1_555 A G 236 A N2 G 238 1_555 hydrog WATSON-CRICK A C 7 A N3 C 9 1_555 A G 235 A N1 G 237 1_555 hydrog WATSON-CRICK A C 7 A N4 C 9 1_555 A G 235 A O6 G 237 1_555 hydrog WATSON-CRICK A C 7 A O2 C 9 1_555 A G 235 A N2 G 237 1_555 hydrog C-A MISPAIR A C 8 A N4 C 10 1_555 A A 234 A N1 A 236 1_555 hydrog WATSON-CRICK A C 9 A N3 C 11 1_555 A G 233 A N1 G 235 1_555 hydrog WATSON-CRICK A C 9 A N4 C 11 1_555 A G 233 A O6 G 235 1_555 hydrog WATSON-CRICK A C 9 A O2 C 11 1_555 A G 233 A N2 G 235 1_555 hydrog WATSON-CRICK A G 10 A N1 G 12 1_555 A C 232 A N3 C 234 1_555 hydrog WATSON-CRICK A G 10 A N2 G 12 1_555 A C 232 A O2 C 234 1_555 hydrog WATSON-CRICK A G 10 A O6 G 12 1_555 A C 232 A N4 C 234 1_555 hydrog WATSON-CRICK A U 11 A N3 U 13 1_555 A A 231 A N1 A 233 1_555 hydrog WATSON-CRICK A U 11 A O4 U 13 1_555 A A 231 A N6 A 233 1_555 hydrog WATSON-CRICK A C 12 A N3 C 14 1_555 A G 230 A N1 G 232 1_555 hydrog WATSON-CRICK A C 12 A N4 C 14 1_555 A G 230 A O6 G 232 1_555 hydrog WATSON-CRICK A C 12 A O2 C 14 1_555 A G 230 A N2 G 232 1_555 hydrog WATSON-CRICK A C 13 A N3 C 15 1_555 A G 229 A N1 G 231 1_555 hydrog WATSON-CRICK A C 13 A N4 C 15 1_555 A G 229 A O6 G 231 1_555 hydrog WATSON-CRICK A C 13 A O2 C 15 1_555 A G 229 A N2 G 231 1_555 hydrog WATSON-CRICK A C 14 A N3 C 16 1_555 A G 228 A N1 G 230 1_555 hydrog WATSON-CRICK A C 14 A N4 C 16 1_555 A G 228 A O6 G 230 1_555 hydrog WATSON-CRICK A C 14 A O2 C 16 1_555 A G 228 A N2 G 230 1_555 hydrog TYPE_28_PAIR A G 16 A N1 G 18 1_555 A U 148 A O2 U 150 1_555 hydrog TYPE_28_PAIR A G 16 A O6 G 18 1_555 A U 148 A N3 U 150 1_555 hydrog WATSON-CRICK A C 17 A N3 C 19 1_555 A G 147 A N1 G 149 1_555 hydrog WATSON-CRICK A C 17 A N4 C 19 1_555 A G 147 A O6 G 149 1_555 hydrog WATSON-CRICK A C 17 A O2 C 19 1_555 A G 147 A N2 G 149 1_555 hydrog WATSON-CRICK A C 18 A N3 C 20 1_555 A G 146 A N1 G 148 1_555 hydrog WATSON-CRICK A C 18 A N4 C 20 1_555 A G 146 A O6 G 148 1_555 hydrog WATSON-CRICK A C 18 A O2 C 20 1_555 A G 146 A N2 G 148 1_555 hydrog WATSON-CRICK A C 19 A N3 C 21 1_555 A G 145 A N1 G 147 1_555 hydrog WATSON-CRICK A C 19 A N4 C 21 1_555 A G 145 A O6 G 147 1_555 hydrog WATSON-CRICK A C 19 A O2 C 21 1_555 A G 145 A N2 G 147 1_555 hydrog WATSON-CRICK A G 20 A N1 G 22 1_555 A C 144 A N3 C 146 1_555 hydrog WATSON-CRICK A G 20 A N2 G 22 1_555 A C 144 A O2 C 146 1_555 hydrog WATSON-CRICK A G 20 A O6 G 22 1_555 A C 144 A N4 C 146 1_555 hydrog WATSON-CRICK A A 21 A N1 A 23 1_555 A U 143 A N3 U 145 1_555 hydrog WATSON-CRICK A A 21 A N6 A 23 1_555 A U 143 A O4 U 145 1_555 hydrog WATSON-CRICK A C 22 A N3 C 24 1_555 A G 142 A N1 G 144 1_555 hydrog WATSON-CRICK A C 22 A N4 C 24 1_555 A G 142 A O6 G 144 1_555 hydrog WATSON-CRICK A C 22 A O2 C 24 1_555 A G 142 A N2 G 144 1_555 hydrog WATSON-CRICK A G 23 A N1 G 25 1_555 A C 141 A N3 C 143 1_555 hydrog WATSON-CRICK A G 23 A N2 G 25 1_555 A C 141 A O2 C 143 1_555 hydrog WATSON-CRICK A G 23 A O6 G 25 1_555 A C 141 A N4 C 143 1_555 hydrog WATSON-CRICK A G 24 A N1 G 26 1_555 A C 140 A N3 C 142 1_555 hydrog WATSON-CRICK A G 24 A N2 G 26 1_555 A C 140 A O2 C 142 1_555 hydrog WATSON-CRICK A G 24 A O6 G 26 1_555 A C 140 A N4 C 142 1_555 hydrog WATSON-CRICK A G 25 A N1 G 27 1_555 A C 139 A N3 C 141 1_555 hydrog WATSON-CRICK A G 25 A N2 G 27 1_555 A C 139 A O2 C 141 1_555 hydrog WATSON-CRICK A G 25 A O6 G 27 1_555 A C 139 A N4 C 141 1_555 hydrog WATSON-CRICK A G 26 A N1 G 28 1_555 A C 138 A N3 C 140 1_555 hydrog WATSON-CRICK A G 26 A N2 G 28 1_555 A C 138 A O2 C 140 1_555 hydrog WATSON-CRICK A G 26 A O6 G 28 1_555 A C 138 A N4 C 140 1_555 hydrog WATSON-CRICK A G 27 A N1 G 29 1_555 A C 137 A N3 C 139 1_555 hydrog WATSON-CRICK A G 27 A N2 G 29 1_555 A C 137 A O2 C 139 1_555 hydrog WATSON-CRICK A G 27 A O6 G 29 1_555 A C 137 A N4 C 139 1_555 hydrog TYPE_28_PAIR A U 28 A N3 U 30 1_555 A G 136 A O6 G 138 1_555 hydrog TYPE_28_PAIR A U 28 A O2 U 30 1_555 A G 136 A N1 G 138 1_555 hydrog A-G MISPAIR A A 29 A N6 A 31 1_555 A G 108 A O6 G 110 1_555 hydrog A-A MISPAIR A A 29 A N1 A 31 1_555 A A 135 A N6 A 137 1_555 hydrog A-G MISPAIR A A 32 A N6 A 34 1_555 A G 161 A N3 G 163 1_555 hydrog WATSON-CRICK A G 33 A N1 G 35 1_555 A C 160 A N3 C 162 1_555 hydrog WATSON-CRICK A G 33 A N2 G 35 1_555 A C 160 A O2 C 162 1_555 hydrog WATSON-CRICK A G 33 A O6 G 35 1_555 A C 160 A N4 C 162 1_555 hydrog WATSON-CRICK A G 34 A N1 G 36 1_555 A C 159 A N3 C 161 1_555 hydrog WATSON-CRICK A G 34 A N2 G 36 1_555 A C 159 A O2 C 161 1_555 hydrog WATSON-CRICK A G 34 A O6 G 36 1_555 A C 159 A N4 C 161 1_555 hydrog WATSON-CRICK A G 35 A N1 G 37 1_555 A C 158 A N3 C 160 1_555 hydrog WATSON-CRICK A G 35 A N2 G 37 1_555 A C 158 A O2 C 160 1_555 hydrog WATSON-CRICK A G 35 A O6 G 37 1_555 A C 158 A N4 C 160 1_555 hydrog WATSON-CRICK A C 36 A N3 C 38 1_555 A G 157 A N1 G 159 1_555 hydrog WATSON-CRICK A C 36 A N4 C 38 1_555 A G 157 A O6 G 159 1_555 hydrog WATSON-CRICK A C 36 A O2 C 38 1_555 A G 157 A N2 G 159 1_555 hydrog WATSON-CRICK A G 37 A N1 G 39 1_555 A C 156 A N3 C 158 1_555 hydrog WATSON-CRICK A G 37 A N2 G 39 1_555 A C 156 A O2 C 158 1_555 hydrog WATSON-CRICK A G 37 A O6 G 39 1_555 A C 156 A N4 C 158 1_555 hydrog WATSON-CRICK A C 38 A N3 C 40 1_555 A G 155 A N1 G 157 1_555 hydrog WATSON-CRICK A C 38 A N4 C 40 1_555 A G 155 A O6 G 157 1_555 hydrog WATSON-CRICK A C 38 A O2 C 40 1_555 A G 155 A N2 G 157 1_555 hydrog WATSON-CRICK A C 39 A N3 C 41 1_555 A G 154 A N1 G 156 1_555 hydrog WATSON-CRICK A C 39 A N4 C 41 1_555 A G 154 A O6 G 156 1_555 hydrog WATSON-CRICK A C 39 A O2 C 41 1_555 A G 154 A N2 G 156 1_555 hydrog WATSON-CRICK A C 40 A N3 C 42 1_555 A G 153 A N1 G 155 1_555 hydrog WATSON-CRICK A C 40 A N4 C 42 1_555 A G 153 A O6 G 155 1_555 hydrog WATSON-CRICK A C 40 A O2 C 42 1_555 A G 153 A N2 G 155 1_555 hydrog G-A MISPAIR A G 41 A N2 G 43 1_555 A A 152 A N1 A 154 1_555 hydrog A-A MISPAIR A A 43 A N6 A 45 1_555 A A 221 A N7 A 223 1_555 hydrog WATSON-CRICK A G 44 A N1 G 46 1_555 A C 75 A N3 C 77 1_555 hydrog WATSON-CRICK A G 44 A N2 G 46 1_555 A C 75 A O2 C 77 1_555 hydrog WATSON-CRICK A G 44 A O6 G 46 1_555 A C 75 A N4 C 77 1_555 hydrog WATSON-CRICK A G 45 A N1 G 47 1_555 A C 74 A N3 C 76 1_555 hydrog WATSON-CRICK A G 45 A N2 G 47 1_555 A C 74 A O2 C 76 1_555 hydrog WATSON-CRICK A G 45 A O6 G 47 1_555 A C 74 A N4 C 76 1_555 hydrog WATSON-CRICK A C 46 A N3 C 48 1_555 A G 73 A N1 G 75 1_555 hydrog WATSON-CRICK A C 46 A N4 C 48 1_555 A G 73 A O6 G 75 1_555 hydrog WATSON-CRICK A C 46 A O2 C 48 1_555 A G 73 A N2 G 75 1_555 hydrog WATSON-CRICK A G 47 A N1 G 49 1_555 A C 72 A N3 C 74 1_555 hydrog WATSON-CRICK A G 47 A N2 G 49 1_555 A C 72 A O2 C 74 1_555 hydrog WATSON-CRICK A G 47 A O6 G 49 1_555 A C 72 A N4 C 74 1_555 hydrog WATSON-CRICK A C 48 A N3 C 50 1_555 A G 71 A N1 G 73 1_555 hydrog WATSON-CRICK A C 48 A N4 C 50 1_555 A G 71 A O6 G 73 1_555 hydrog WATSON-CRICK A C 48 A O2 C 50 1_555 A G 71 A N2 G 73 1_555 hydrog A-U PAIR A A 49 A N1 A 51 1_555 A U 69 A N3 U 71 1_555 hydrog WATSON-CRICK A C 50 A N3 C 52 1_555 A G 68 A N1 G 70 1_555 hydrog WATSON-CRICK A C 50 A N4 C 52 1_555 A G 68 A O6 G 70 1_555 hydrog WATSON-CRICK A C 50 A O2 C 52 1_555 A G 68 A N2 G 70 1_555 hydrog WATSON-CRICK A C 51 A N3 C 53 1_555 A G 67 A N1 G 69 1_555 hydrog WATSON-CRICK A C 51 A N4 C 53 1_555 A G 67 A O6 G 69 1_555 hydrog WATSON-CRICK A C 51 A O2 C 53 1_555 A G 67 A N2 G 69 1_555 hydrog WATSON-CRICK A U 52 A N3 U 54 1_555 A A 66 A N1 A 68 1_555 hydrog WATSON-CRICK A U 52 A O4 U 54 1_555 A A 66 A N6 A 68 1_555 hydrog WATSON-CRICK A C 53 A N3 C 55 1_555 A G 65 A N1 G 67 1_555 hydrog WATSON-CRICK A C 53 A N4 C 55 1_555 A G 65 A O6 G 67 1_555 hydrog WATSON-CRICK A C 53 A O2 C 55 1_555 A G 65 A N2 G 67 1_555 hydrog WATSON-CRICK A G 54 A N1 G 56 1_555 A C 64 A N3 C 66 1_555 hydrog WATSON-CRICK A G 54 A N2 G 56 1_555 A C 64 A O2 C 66 1_555 hydrog WATSON-CRICK A G 54 A O6 G 56 1_555 A C 64 A N4 C 66 1_555 hydrog WATSON-CRICK A A 55 A N1 A 57 1_555 A U 63 A N3 U 65 1_555 hydrog WATSON-CRICK A A 55 A N6 A 57 1_555 A U 63 A O4 U 65 1_555 hydrog A-C MISPAIR A A 76 A N6 A 78 1_555 A C 220 A N3 C 222 1_555 hydrog WATSON-CRICK A G 77 A N1 G 79 1_555 A C 219 A N3 C 221 1_555 hydrog WATSON-CRICK A G 77 A N2 G 79 1_555 A C 219 A O2 C 221 1_555 hydrog WATSON-CRICK A G 77 A O6 G 79 1_555 A C 219 A N4 C 221 1_555 hydrog WATSON-CRICK A C 78 A N3 C 80 1_555 A G 218 A N1 G 220 1_555 hydrog WATSON-CRICK A C 78 A N4 C 80 1_555 A G 218 A O6 G 220 1_555 hydrog WATSON-CRICK A C 78 A O2 C 80 1_555 A G 218 A N2 G 220 1_555 hydrog WATSON-CRICK A C 79 A N3 C 81 1_555 A G 217 A N1 G 219 1_555 hydrog WATSON-CRICK A C 79 A N4 C 81 1_555 A G 217 A O6 G 219 1_555 hydrog WATSON-CRICK A C 79 A O2 C 81 1_555 A G 217 A N2 G 219 1_555 hydrog WATSON-CRICK A G 80 A N1 G 82 1_555 A C 216 A N3 C 218 1_555 hydrog WATSON-CRICK A G 80 A N2 G 82 1_555 A C 216 A O2 C 218 1_555 hydrog WATSON-CRICK A G 80 A O6 G 82 1_555 A C 216 A N4 C 218 1_555 hydrog WATSON-CRICK A G 81 A N1 G 83 1_555 A C 215 A N3 C 217 1_555 hydrog WATSON-CRICK A G 81 A N2 G 83 1_555 A C 215 A O2 C 217 1_555 hydrog WATSON-CRICK A G 81 A O6 G 83 1_555 A C 215 A N4 C 217 1_555 hydrog WATSON-CRICK A G 82 A N1 G 84 1_555 A C 214 A N3 C 216 1_555 hydrog WATSON-CRICK A G 82 A N2 G 84 1_555 A C 214 A O2 C 216 1_555 hydrog WATSON-CRICK A G 82 A O6 G 84 1_555 A C 214 A N4 C 216 1_555 hydrog WATSON-CRICK A G 83 A N1 G 85 1_555 A C 213 A N3 C 215 1_555 hydrog WATSON-CRICK A G 83 A N2 G 85 1_555 A C 213 A O2 C 215 1_555 hydrog WATSON-CRICK A G 83 A O6 G 85 1_555 A C 213 A N4 C 215 1_555 hydrog WATSON-CRICK A G 84 A N1 G 86 1_555 A C 212 A N3 C 214 1_555 hydrog WATSON-CRICK A G 84 A N2 G 86 1_555 A C 212 A O2 C 214 1_555 hydrog WATSON-CRICK A G 84 A O6 G 86 1_555 A C 212 A N4 C 214 1_555 hydrog WATSON-CRICK A G 85 A N1 G 87 1_555 A C 211 A N3 C 213 1_555 hydrog WATSON-CRICK A G 85 A N2 G 87 1_555 A C 211 A O2 C 213 1_555 hydrog WATSON-CRICK A G 85 A O6 G 87 1_555 A C 211 A N4 C 213 1_555 hydrog WATSON-CRICK A C 86 A N3 C 88 1_555 A G 210 A N1 G 212 1_555 hydrog WATSON-CRICK A C 86 A N4 C 88 1_555 A G 210 A O6 G 212 1_555 hydrog WATSON-CRICK A C 86 A O2 C 88 1_555 A G 210 A N2 G 212 1_555 hydrog G-U MISPAIR A G 87 A N2 G 89 1_555 A U 209 A O4 U 211 1_555 hydrog G-C PAIR A G 91 A N2 G 93 1_555 A C 205 A O2 C 207 1_555 hydrog WATSON-CRICK A C 92 A N3 C 94 1_555 A G 204 A N1 G 206 1_555 hydrog WATSON-CRICK A C 92 A N4 C 94 1_555 A G 204 A O6 G 206 1_555 hydrog WATSON-CRICK A C 92 A O2 C 94 1_555 A G 204 A N2 G 206 1_555 hydrog WATSON-CRICK A C 93 A N3 C 95 1_555 A G 203 A N1 G 205 1_555 hydrog WATSON-CRICK A C 93 A N4 C 95 1_555 A G 203 A O6 G 205 1_555 hydrog WATSON-CRICK A C 93 A O2 C 95 1_555 A G 203 A N2 G 205 1_555 hydrog WATSON-CRICK A C 94 A N3 C 96 1_555 A G 202 A N1 G 204 1_555 hydrog WATSON-CRICK A C 94 A N4 C 96 1_555 A G 202 A O6 G 204 1_555 hydrog WATSON-CRICK A C 94 A O2 C 96 1_555 A G 202 A N2 G 204 1_555 hydrog WATSON-CRICK A C 95 A N3 C 97 1_555 A G 201 A N1 G 203 1_555 hydrog WATSON-CRICK A C 95 A N4 C 97 1_555 A G 201 A O6 G 203 1_555 hydrog WATSON-CRICK A C 95 A O2 C 97 1_555 A G 201 A N2 G 203 1_555 hydrog WATSON-CRICK A U 96 A N3 U 98 1_555 A A 200 A N1 A 202 1_555 hydrog WATSON-CRICK A U 96 A O4 U 98 1_555 A A 200 A N6 A 202 1_555 hydrog WATSON-CRICK A G 97 A N1 G 99 1_555 A C 199 A N3 C 201 1_555 hydrog WATSON-CRICK A G 97 A N2 G 99 1_555 A C 199 A O2 C 201 1_555 hydrog WATSON-CRICK A G 97 A O6 G 99 1_555 A C 199 A N4 C 201 1_555 hydrog WATSON-CRICK A A 98 A N1 A 100 1_555 A U 198 A N3 U 200 1_555 hydrog WATSON-CRICK A A 98 A N6 A 100 1_555 A U 198 A O4 U 200 1_555 hydrog WATSON-CRICK A C 99 A N3 C 101 1_555 A G 197 A N1 G 199 1_555 hydrog WATSON-CRICK A C 99 A N4 C 101 1_555 A G 197 A O6 G 199 1_555 hydrog WATSON-CRICK A C 99 A O2 C 101 1_555 A G 197 A N2 G 199 1_555 hydrog C-G PAIR A C 100 A N4 C 102 1_555 A G 193 A O6 G 195 1_555 hydrog A-G MISPAIR A A 107 A N6 A 109 1_555 A G 136 A N3 G 138 1_555 hydrog WATSON-CRICK A G 108 A N1 G 110 1_555 A C 134 A N3 C 136 1_555 hydrog WATSON-CRICK A G 108 A N2 G 110 1_555 A C 134 A O2 C 136 1_555 hydrog WATSON-CRICK A G 108 A O6 G 110 1_555 A C 134 A N4 C 136 1_555 hydrog WATSON-CRICK A G 109 A N1 G 111 1_555 A C 133 A N3 C 135 1_555 hydrog WATSON-CRICK A G 109 A N2 G 111 1_555 A C 133 A O2 C 135 1_555 hydrog WATSON-CRICK A G 109 A O6 G 111 1_555 A C 133 A N4 C 135 1_555 hydrog WATSON-CRICK A G 110 A N1 G 112 1_555 A C 132 A N3 C 134 1_555 hydrog WATSON-CRICK A G 110 A N2 G 112 1_555 A C 132 A O2 C 134 1_555 hydrog WATSON-CRICK A G 110 A O6 G 112 1_555 A C 132 A N4 C 134 1_555 hydrog WATSON-CRICK A A 111 A N1 A 113 1_555 A U 131 A N3 U 133 1_555 hydrog WATSON-CRICK A A 111 A N6 A 113 1_555 A U 131 A O4 U 133 1_555 hydrog WATSON-CRICK A C 112 A N3 C 114 1_555 A G 130 A N1 G 132 1_555 hydrog WATSON-CRICK A C 112 A N4 C 114 1_555 A G 130 A O6 G 132 1_555 hydrog WATSON-CRICK A C 112 A O2 C 114 1_555 A G 130 A N2 G 132 1_555 hydrog A-U PAIR A A 113 A N1 A 115 1_555 A U 129 A N3 U 131 1_555 hydrog A-A MISPAIR A A 114 A N1 A 116 1_555 A A 128 A N6 A 130 1_555 hydrog WATSON-CRICK A U 115 A N3 U 117 1_555 A A 128 A N1 A 130 1_555 hydrog WATSON-CRICK A U 115 A O4 U 117 1_555 A A 128 A N6 A 130 1_555 hydrog WATSON-CRICK A G 116 A N1 G 118 1_555 A C 127 A N3 C 129 1_555 hydrog WATSON-CRICK A G 116 A N2 G 118 1_555 A C 127 A O2 C 129 1_555 hydrog WATSON-CRICK A G 116 A O6 G 118 1_555 A C 127 A N4 C 129 1_555 hydrog WATSON-CRICK A C 117 A N3 C 119 1_555 A G 125 A N1 G 127 1_555 hydrog WATSON-CRICK A C 117 A N4 C 119 1_555 A G 125 A O6 G 127 1_555 hydrog WATSON-CRICK A C 117 A O2 C 119 1_555 A G 125 A N2 G 127 1_555 hydrog WATSON-CRICK A C 118 A N3 C 120 1_555 A G 124 A N1 G 126 1_555 hydrog WATSON-CRICK A C 118 A N4 C 120 1_555 A G 124 A O6 G 126 1_555 hydrog WATSON-CRICK A C 118 A O2 C 120 1_555 A G 124 A N2 G 126 1_555 hydrog A-G MISPAIR A A 149 A N6 A 151 1_555 A G 228 A N7 G 230 1_555 hydrog A-A MISPAIR A A 163 A N6 A 165 1_555 A A 196 A N1 A 198 1_555 hydrog WATSON-CRICK A G 164 A N1 G 166 1_555 A C 195 A N3 C 197 1_555 hydrog WATSON-CRICK A G 164 A N2 G 166 1_555 A C 195 A O2 C 197 1_555 hydrog WATSON-CRICK A G 164 A O6 G 166 1_555 A C 195 A N4 C 197 1_555 hydrog WATSON-CRICK A G 165 A N1 G 167 1_555 A C 194 A N3 C 196 1_555 hydrog WATSON-CRICK A G 165 A N2 G 167 1_555 A C 194 A O2 C 196 1_555 hydrog WATSON-CRICK A G 165 A O6 G 167 1_555 A C 194 A N4 C 196 1_555 hydrog WATSON-CRICK A C 166 A N3 C 168 1_555 A G 193 A N1 G 195 1_555 hydrog WATSON-CRICK A C 166 A N4 C 168 1_555 A G 193 A O6 G 195 1_555 hydrog WATSON-CRICK A C 166 A O2 C 168 1_555 A G 193 A N2 G 195 1_555 hydrog WATSON-CRICK A G 167 A N1 G 169 1_555 A C 192 A N3 C 194 1_555 hydrog WATSON-CRICK A G 167 A N2 G 169 1_555 A C 192 A O2 C 194 1_555 hydrog WATSON-CRICK A G 167 A O6 G 169 1_555 A C 192 A N4 C 194 1_555 hydrog WATSON-CRICK A C 168 A N3 C 170 1_555 A G 191 A N1 G 193 1_555 hydrog WATSON-CRICK A C 168 A N4 C 170 1_555 A G 191 A O6 G 193 1_555 hydrog WATSON-CRICK A C 168 A O2 C 170 1_555 A G 191 A N2 G 193 1_555 hydrog A-U PAIR A A 169 A N1 A 171 1_555 A U 189 A N3 U 191 1_555 hydrog WATSON-CRICK A C 170 A N3 C 172 1_555 A G 188 A N1 G 190 1_555 hydrog WATSON-CRICK A C 170 A N4 C 172 1_555 A G 188 A O6 G 190 1_555 hydrog WATSON-CRICK A C 170 A O2 C 172 1_555 A G 188 A N2 G 190 1_555 hydrog WATSON-CRICK A C 171 A N3 C 173 1_555 A G 187 A N1 G 189 1_555 hydrog WATSON-CRICK A C 171 A N4 C 173 1_555 A G 187 A O6 G 189 1_555 hydrog WATSON-CRICK A C 171 A O2 C 173 1_555 A G 187 A N2 G 189 1_555 hydrog WATSON-CRICK A U 172 A N3 U 174 1_555 A A 186 A N1 A 188 1_555 hydrog WATSON-CRICK A U 172 A O4 U 174 1_555 A A 186 A N6 A 188 1_555 hydrog WATSON-CRICK A C 173 A N3 C 175 1_555 A G 185 A N1 G 187 1_555 hydrog WATSON-CRICK A C 173 A N4 C 175 1_555 A G 185 A O6 G 187 1_555 hydrog WATSON-CRICK A C 173 A O2 C 175 1_555 A G 185 A N2 G 187 1_555 hydrog WATSON-CRICK A C 174 A N3 C 176 1_555 A G 184 A N1 G 186 1_555 hydrog WATSON-CRICK A C 174 A N4 C 176 1_555 A G 184 A O6 G 186 1_555 hydrog WATSON-CRICK A C 174 A O2 C 176 1_555 A G 184 A N2 G 186 1_555 hydrog WATSON-CRICK A A 175 A N1 A 177 1_555 A U 183 A N3 U 185 1_555 hydrog WATSON-CRICK A A 175 A N6 A 177 1_555 A U 183 A O4 U 185 1_555 hydrog TYPE_28_PAIR A U 176 A N3 U 178 1_555 A G 182 A O6 G 184 1_555 hydrog TYPE_28_PAIR A U 176 A O2 U 178 1_555 A G 182 A N1 G 184 1_555 hydrog G-A MISPAIR A G 177 A N2 G 179 1_555 A A 181 A N7 A 183 1_555 RNA De Novo RNA, RNA Pseudocycle, pC2-240-0, RNA 9YN7 PDB 1 1 9YN7 -1 240 9YN7 -1 240 9YN7 A 1 1 242