0.020448 0.000000 0.000000 0.000000 0.017544 0.000000 0.000000 0.000000 0.015876 0.00000 0.00000 0.00000 Li, C.Y. Ren, A.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 48.904 56.999 62.989 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C19 H21 N7 O6 443.413 DIHYDROFOLIC ACID non-polymer C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C10 H16 N5 O14 P3 523.180 n GUANOSINE-5'-TRIPHOSPHATE non-polymer H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C10 H26 N4 202.340 SPERMINE non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H Y 73 N N Y 74 N C N 75 N N Y 76 N N Y 77 N C N 78 N O Y 79 N C N 80 N N N 81 N C N 82 N C N 83 N N Y 84 N C N 85 N C N 86 N N Y 87 N C Y 88 N C Y 89 N C Y 90 N C Y 91 N C Y 92 N C N 93 N C N 94 N O N 95 N N N 96 S C N 97 N C N 98 N C N 99 N C N 100 N O N 101 N O N 102 N C N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N O N 127 N P N 128 N O N 129 N O N 130 N O N 131 N C N 132 R C N 133 N O N 134 S C N 135 N O N 136 R C N 137 N O N 138 R C Y 139 N N Y 140 N C Y 141 N N Y 142 N C N 143 N C N 144 N O N 145 N N N 146 N C N 147 N N N 148 N N Y 149 N C N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N P N 165 N O N 166 N O N 167 N O N 168 N O N 169 N P N 170 N O N 171 N O N 172 N O N 173 N P N 174 N O N 175 N O N 176 N O N 177 N C N 178 R C N 179 N O N 180 S C N 181 N O N 182 R C N 183 N O N 184 R C Y 185 N N Y 186 N C Y 187 N N Y 188 N C N 189 N C N 190 N O N 191 N N N 192 N C N 193 N N N 194 N N Y 195 N C N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N O N 213 N H N 214 N H N 215 N MG N 216 N N N 217 N C N 218 N C N 219 N C N 220 N N N 221 N C N 222 N C N 223 N C N 224 N C N 225 N N N 226 N C N 227 N C N 228 N C N 229 N N N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N O N 257 N P N 258 N O N 259 N O N 260 N O N 261 N C N 262 R C N 263 N O N 264 S C N 265 N O N 266 R C N 267 N O N 268 R C N 269 N N N 270 N C N 271 N O N 272 N N N 273 N C N 274 N O N 275 N C N 276 N C N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing Y 76 N sing Y 77 N sing N 78 N sing N 79 N sing Y 80 N doub N 81 N sing N 82 N sing Y 83 N sing N 84 N doub Y 85 N sing N 86 N sing Y 87 N doub N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing Y 101 N doub Y 102 N sing N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N sing Y 108 N sing Y 109 N doub N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing Y 155 N sing Y 156 N sing Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing Y 161 N doub N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing Y 205 N sing Y 206 N sing Y 207 N doub N 208 N sing Y 209 N sing N 210 N sing Y 211 N doub N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N doub N 295 N sing N 296 N sing UK Nucleic Acids Res. NARHAD 0389 1362-4962 52 8454 8465 10.1093/nar/gkae377 38769061 Structure-based characterization and compound identification of the wild-type THF class-II riboswitch. 2024 0000-0001-8139-0474 0000-0002-5420-4899 10.2210/pdb8xzl/pdb pdb_00008xzl 100 1 N PIXEL 2021-12-11 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.97853 1.0 BL18U1 SSRF 0.97853 SYNCHROTRON SSRF BEAMLINE BL18U1 17174.043 RNA (53-MER) 1 man polymer 443.413 DIHYDROFOLIC ACID 1 syn non-polymer 24.305 MAGNESIUM ION 4 syn non-polymer 202.340 SPERMINE 1 syn non-polymer 18.015 water 14 nat water env6 no yes (GTP)GGUGUGUACCGUUCAACUCGUCCCAGCUUCGACUGGGACUACGGGAGCGCCU GGGUGUGUACCGUUCAACUCGUCCCAGCUUCGACUGGGACUACGGGAGCGCCU A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 53 41312 unidentified eubacterium clone A70 905931 in vitro transcription vector pT7-TP(deltai) Biological sequence 1 2.63 53.29 VAPOR DIFFUSION, SITTING DROP 0.08 M Sodium chloride, 0.04 M Sodium cacodylate trihydrate pH 7.0, 30% v/v MPD, 0.012 M Spermine tetrahydrochloride 289 -9.310 1 28 A 1 A 53 -11.797 A_GTP1:U53_A 1 -2.181 -2.121 -0.675 -0.613 0.702 1 19 A 2 A 52 3.456 A_G2:C52_A 2 -12.140 -0.413 0.126 0.066 -3.846 1 19 A 3 A 51 3.307 A_G3:C51_A 3 -14.603 -0.435 -0.151 -0.075 -0.905 1 28 A 4 A 50 3.485 A_U4:G50_A 4 -12.712 2.333 0.046 -0.549 -10.868 1 19 A 5 A 49 0.727 A_G5:C49_A 5 -12.766 -0.094 -0.289 -0.167 -3.929 1 28 A 6 A 48 -4.824 A_U6:G48_A 6 -2.152 2.435 -0.155 -0.529 11.202 10 11 A 7 A 47 -10.253 A_G7:A47_A 7 0.807 6.922 0.199 -4.762 -13.218 9 11 A 9 A 46 2.522 A_A9:G46_A 8 -11.972 -6.811 0.823 -4.244 0.711 1 19 A 10 A 45 0.513 A_C10:G45_A 9 -8.528 0.326 -0.026 -0.206 5.317 1 19 A 11 A 44 0.008 A_C11:G44_A 10 -10.342 0.234 -0.121 -0.134 -10.809 1 19 A 12 A 43 0.406 A_G12:C43_A 11 -17.925 -0.312 0.009 -0.203 -12.973 1 20 A 13 A 42 0.851 A_U13:A42_A 12 -11.250 -0.004 0.406 -0.001 3.014 1 19 A 21 A 40 0.658 A_G21:C40_A 13 -15.221 -0.104 0.231 -0.149 1.081 1 20 A 22 A 39 2.333 A_U22:A39_A 14 -17.739 -0.078 0.043 -0.068 3.957 1 19 A 23 A 38 0.532 A_C23:G38_A 15 -11.346 0.119 -0.067 -0.092 1.531 1 19 A 24 A 37 -0.874 A_C24:G37_A 16 -13.853 0.280 -0.093 -0.257 -0.511 1 19 A 25 A 36 2.905 A_C25:G36_A 17 -13.730 0.405 0.193 0.020 -3.884 1 20 A 26 A 35 2.403 A_A26:U35_A 18 -15.427 0.100 0.105 -0.126 -10.901 1 19 A 27 A 34 2.490 A_G27:C34_A 19 -19.255 -0.353 0.065 -0.102 5.209 1 19 A 28 A 32 -4.080 A_C28:G32_A 20 -2.544 0.308 -0.329 -0.245 5.191 3 23 A 14 A 17 -75.745 A_U14:A17_A 21 18.693 -0.912 -0.363 3.658 2.833 38.879 A A 1 2 8.408 A A 53 52 3.154 5.531 0.223 -1.175 AA_GTP1G2:C52U53_AA 1 -9.002 13.684 37.469 -2.393 -1.357 2.767 32.229 A A 2 3 14.014 A A 52 51 3.266 7.708 -0.101 -1.753 AA_G2G3:C51C52_AA 2 0.212 -0.386 31.317 -4.442 0.218 3.175 42.694 A A 3 4 4.870 A A 51 50 3.291 3.542 0.186 -1.354 AA_G3U4:G50C51_AA 3 0.498 -0.685 42.551 -2.212 -0.207 2.022 27.914 A A 4 5 26.851 A A 50 49 3.354 12.423 -0.407 -1.926 AA_U4G5:C49G50_AA 4 5.463 -11.807 24.451 -6.593 1.988 2.952 39.342 A A 5 6 7.087 A A 49 48 3.115 4.761 -0.012 -1.224 AA_G5U6:G48C49_AA 5 0.217 -0.323 39.063 -2.344 0.042 2.758 53.168 A A 6 7 8.086 A A 48 47 2.971 7.213 -0.269 -1.312 AA_U6G7:A47G48_AA 6 3.756 -4.211 52.587 -1.871 0.512 0.755 19.125 A A 7 9 66.963 A A 47 46 5.576 16.893 -1.827 -0.379 AA_G7A9:G46A47_AA 7 6.755 -26.777 5.922 -13.966 10.627 2.991 59.757 A A 9 10 8.352 A A 46 45 3.068 8.297 0.335 -0.494 AA_A9C10:G45G46_AA 8 2.414 -2.430 59.186 -0.881 -0.224 2.496 26.979 A A 10 11 15.386 A A 45 44 3.108 7.084 0.289 -2.015 AA_C10C11:G44G45_AA 9 2.782 -6.042 25.902 -5.900 0.001 2.624 35.489 A A 11 12 21.484 A A 44 43 3.464 12.817 0.096 -1.764 AA_C11G12:C43G44_AA 10 -0.071 0.119 33.163 -4.704 -0.168 3.064 33.791 A A 12 13 8.353 A A 43 42 3.294 4.839 0.016 -1.415 AA_G12U13:A42C43_AA 11 -0.756 1.305 33.444 -3.198 -0.146 5.738 78.096 A A 13 21 2.827 A A 42 40 5.859 3.560 -3.018 -2.901 AA_U13G21:C40A42_AA 12 0.185 -0.147 78.028 -2.479 2.405 2.844 32.684 A A 21 22 14.007 A A 40 39 3.254 7.810 -0.140 -1.371 AA_G21U22:A39C40_AA 13 0.335 -0.601 31.760 -3.715 0.303 2.833 33.418 A A 22 23 11.527 A A 39 38 3.140 6.587 -0.046 -1.299 AA_U22C23:G38A39_AA 14 0.172 -0.301 32.780 -3.264 0.106 2.794 32.576 A A 23 24 13.693 A A 38 37 3.271 7.609 0.241 -1.756 AA_C23C24:G37G38_AA 15 1.947 -3.504 31.640 -4.379 -0.111 2.762 31.092 A A 24 25 13.362 A A 37 36 3.268 7.102 0.130 -1.898 AA_C24C25:G36G37_AA 16 -0.112 0.210 30.289 -4.811 -0.262 2.661 27.992 A A 25 26 15.813 A A 36 35 3.274 7.554 0.154 -1.886 AA_C25A26:U35G36_AA 17 1.477 -3.093 26.933 -5.555 0.006 2.934 34.384 A A 26 27 12.276 A A 35 34 3.334 7.206 -0.139 -1.606 AA_A26G27:C34U35_AA 18 0.801 -1.365 33.634 -3.808 0.357 2.483 28.891 A A 27 28 11.053 A A 34 32 2.857 5.446 -0.759 -0.635 AA_G27C28:G32C34_AA 19 5.827 -11.828 27.791 -2.280 2.600 citation repository Initial release Database references 1 0 2024-07-24 1 1 2024-08-21 _citation.journal_volume _citation.page_first _citation.page_last China National Natural Science Foundation of China (NSFC) aimingren@zju.edu.cn 0000-0002-5420-4899 Aiming Ren principal investigator/group leader N PDBJ Y PDBJ 2024-01-21 REL REL DHF DHF SUBJECT OF INVESTIGATION DHF DIHYDROFOLIC ACID MG MAGNESIUM ION SPM SPERMINE HOH water Y 8XZE PDB experimental model DHF 101 2 DHF DHF 101 A MG 1 3 MG MG 102 A MG 2 3 MG MG 103 A MG 3 3 MG MG 104 A MG 4 3 MG MG 105 A SPM 201 4 SPM SPM 106 A HOH 2 5 HOH HOH 201 A HOH 1 5 HOH HOH 202 A HOH 13 5 HOH HOH 203 A HOH 11 5 HOH HOH 204 A HOH 6 5 HOH HOH 205 A HOH 9 5 HOH HOH 206 A HOH 8 5 HOH HOH 207 A HOH 4 5 HOH HOH 208 A HOH 10 5 HOH HOH 209 A HOH 14 5 HOH HOH 210 A HOH 5 5 HOH HOH 211 A HOH 7 5 HOH HOH 212 A HOH 3 5 HOH HOH 213 A HOH 12 5 HOH HOH 214 A GTP 1 n 1 GTP 1 A G 2 n 2 G 2 A G 3 n 3 G 3 A U 4 n 4 U 4 A G 5 n 5 G 5 A U 6 n 6 U 6 A G 7 n 7 G 7 A U 8 n 8 U 8 A A 9 n 9 A 9 A C 10 n 10 C 10 A C 11 n 11 C 11 A G 12 n 12 G 12 A U 13 n 13 U 13 A U 14 n 14 U 14 A C 15 n 15 C 15 A A 16 n 16 A 16 A A 17 n 17 A 17 A C 18 n 18 C 18 A U 19 n 19 U 19 A C 20 n 20 C 20 A G 21 n 21 G 21 A U 22 n 22 U 22 A C 23 n 23 C 23 A C 24 n 24 C 24 A C 25 n 25 C 25 A A 26 n 26 A 26 A G 27 n 27 G 27 A C 28 n 28 C 28 A U 29 n 29 U 29 A U 30 n 30 U 30 A C 31 n 31 C 31 A G 32 n 32 G 32 A A 33 n 33 A 33 A C 34 n 34 C 34 A U 35 n 35 U 35 A G 36 n 36 G 36 A G 37 n 37 G 37 A G 38 n 38 G 38 A A 39 n 39 A 39 A C 40 n 40 C 40 A U 41 n 41 U 41 A A 42 n 42 A 42 A C 43 n 43 C 43 A G 44 n 44 G 44 A G 45 n 45 G 45 A G 46 n 46 G 46 A A 47 n 47 A 47 A G 48 n 48 G 48 A C 49 n 49 C 49 A G 50 n 50 G 50 A C 51 n 51 C 51 A C 52 n 52 C 52 A U 53 n 53 U 53 A author_defined_assembly 1 monomeric isothermal titration calorimetry A U 4 A O4 U 4 1_555 A MG 103 D MG MG 1_555 A HOH 213 H O HOH 1_555 149.7 A U 53 A O3' U 53 1_555 A MG 102 C MG MG 1_555 A HOH 201 H O HOH 1_555 61.6 A U 53 A O3' U 53 1_555 A MG 102 C MG MG 1_555 A HOH 202 H O HOH 1_555 69.3 A HOH 201 H O HOH 1_555 A MG 102 C MG MG 1_555 A HOH 202 H O HOH 1_555 71.2 A HOH 203 H O HOH 1_555 A MG 105 F MG MG 1_555 A HOH 210 H O HOH 1_555 138.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O O HOH HOH 203 204 2.18 1 A A O3' O U HOH 53 201 2.18 1 -19.17 1.90 104.00 84.83 A A A O3' P O5' GTP G G 1 2 2 Y 1 11.24 1.10 110.50 121.74 A A A O3' P OP1 GTP G G 1 2 2 Y 1 A A O3' P GTP G 1 2 0.074 0.012 1.607 1.681 Y 0.2104 0.1993 0.1999 2.13 31.49 537 10188 5.27 99.16 0.24 1 THROUGHOUT 1.38 MOLECULAR REPLACEMENT 32.73 0.90 1.11 ML FLAT BULK SOLVENT MODEL 2.13 31.49 14 1200 82 1104 0 0.005 1312 1.180 2029 12.484 655 0.040 265 0.007 58 0.3968 0.3145 2.35 134 2340 98.00 0.3323 0.3042 2.69 136 2356 99.00 0.2505 0.2615 3.38 134 2416 100.00 0.1742 0.1626 31.49 133 2539 100.00 2.13 50.00 8XZL 10293 0.933 0.983 0.096 0.031 0.101 1.701 1 6.7 122667 11.9 99.9 0.814 2.13 2.17 492 0.881 0.968 0.255 0.854 0.562 1 10.7 100.0 0.719 2.17 2.21 517 0.909 0.976 0.224 0.754 0.542 1 11.1 99.6 0.712 2.21 2.25 485 0.918 0.978 0.222 0.746 0.955 1 11.4 100.0 0.746 2.25 2.29 508 0.910 0.976 0.233 0.782 0.767 1 11.2 99.8 0.540 2.29 2.34 514 0.957 0.989 0.165 0.565 0.884 1 11.3 100.0 0.476 2.34 2.40 489 0.967 0.992 0.139 0.497 0.835 1 12.9 100.0 0.397 2.40 2.46 504 0.970 0.992 0.115 0.414 0.850 1 13.0 99.8 0.349 2.46 2.53 515 0.983 0.996 0.102 0.363 0.931 1 13.0 100.0 0.297 2.53 2.60 504 0.976 0.994 0.088 0.310 1.091 1 12.8 100.0 0.242 2.60 2.68 504 0.982 0.995 0.072 0.252 1.289 1 12.5 100.0 0.221 2.68 2.78 504 0.983 0.996 0.068 0.232 1.518 1 11.7 99.8 0.185 2.78 2.89 520 0.990 0.998 0.057 0.194 1.714 1 12.0 100.0 0.141 2.89 3.02 515 0.996 0.999 0.043 0.148 1.972 1 12.7 100.0 0.119 3.02 3.18 506 0.993 0.998 0.039 0.125 2.434 1 12.3 99.8 0.107 3.18 3.38 520 0.996 0.999 0.034 0.112 2.714 1 12.2 100.0 0.097 3.38 3.64 512 0.996 0.999 0.032 0.103 2.804 1 11.0 99.8 0.095 3.64 4.01 523 0.993 0.998 0.030 0.099 2.926 1 12.2 100.0 0.091 4.01 4.59 526 0.995 0.999 0.028 0.095 2.946 1 12.4 100.0 0.081 4.59 5.78 548 0.997 0.999 0.025 0.085 2.659 1 11.3 100.0 0.083 5.78 50.00 587 0.996 0.999 0.029 0.089 3.259 1 10.7 99.8 refinement PHENIX (1.18.2_3874: ???) data scaling HKL-3000 data reduction HKL-3000 phasing PHASER N Crystal structure of folE riboswitch with DHF 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N covale 1.681 both A GTP 1 A O3' GTP 1 1_555 A G 2 A P G 2 1_555 metalc 2.623 A U 4 A O4 U 4 1_555 A MG 103 D MG MG 1_555 metalc 2.087 A U 53 A O3' U 53 1_555 A MG 102 C MG MG 1_555 metalc 2.169 A MG 102 C MG MG 1_555 A HOH 201 H O HOH 1_555 metalc 2.078 A MG 102 C MG MG 1_555 A HOH 202 H O HOH 1_555 metalc 2.459 A MG 103 D MG MG 1_555 A HOH 213 H O HOH 1_555 metalc 2.095 A MG 104 E MG MG 1_555 A HOH 208 H O HOH 1_555 metalc 2.644 A MG 105 F MG MG 1_555 A HOH 203 H O HOH 1_555 metalc 1.968 A MG 105 F MG MG 1_555 A HOH 210 H O HOH 1_555 hydrog TYPE_28_PAIR A GTP 1 A N1 GTP 1 1_555 A U 53 A O2 U 53 1_555 hydrog TYPE_28_PAIR A GTP 1 A O6 GTP 1 1_555 A U 53 A N3 U 53 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 52 A N3 C 52 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 52 A O2 C 52 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 52 A N4 C 52 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 A C 51 A N3 C 51 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 A C 51 A O2 C 51 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 A C 51 A N4 C 51 1_555 hydrog TYPE_28_PAIR A U 4 A N3 U 4 1_555 A G 50 A O6 G 50 1_555 hydrog TYPE_28_PAIR A U 4 A O2 U 4 1_555 A G 50 A N1 G 50 1_555 hydrog WATSON-CRICK A G 5 A N1 G 5 1_555 A C 49 A N3 C 49 1_555 hydrog WATSON-CRICK A G 5 A N2 G 5 1_555 A C 49 A O2 C 49 1_555 hydrog WATSON-CRICK A G 5 A O6 G 5 1_555 A C 49 A N4 C 49 1_555 hydrog TYPE_28_PAIR A U 6 A N3 U 6 1_555 A G 48 A O6 G 48 1_555 hydrog TYPE_28_PAIR A U 6 A O2 U 6 1_555 A G 48 A N1 G 48 1_555 hydrog TYPE_11_PAIR A G 7 A N2 G 7 1_555 A A 47 A N7 A 47 1_555 hydrog TYPE_11_PAIR A G 7 A N3 G 7 1_555 A A 47 A N6 A 47 1_555 hydrog TYPE_11_PAIR A A 9 A N6 A 9 1_555 A G 46 A N3 G 46 1_555 hydrog TYPE_11_PAIR A A 9 A N7 A 9 1_555 A G 46 A N2 G 46 1_555 hydrog WATSON-CRICK A C 10 A N3 C 10 1_555 A G 45 A N1 G 45 1_555 hydrog WATSON-CRICK A C 10 A N4 C 10 1_555 A G 45 A O6 G 45 1_555 hydrog WATSON-CRICK A C 10 A O2 C 10 1_555 A G 45 A N2 G 45 1_555 hydrog WATSON-CRICK A C 11 A N3 C 11 1_555 A G 44 A N1 G 44 1_555 hydrog WATSON-CRICK A C 11 A N4 C 11 1_555 A G 44 A O6 G 44 1_555 hydrog WATSON-CRICK A C 11 A O2 C 11 1_555 A G 44 A N2 G 44 1_555 hydrog WATSON-CRICK A G 12 A N1 G 12 1_555 A C 43 A N3 C 43 1_555 hydrog WATSON-CRICK A G 12 A N2 G 12 1_555 A C 43 A O2 C 43 1_555 hydrog WATSON-CRICK A G 12 A O6 G 12 1_555 A C 43 A N4 C 43 1_555 hydrog WATSON-CRICK A U 13 A N3 U 13 1_555 A A 42 A N1 A 42 1_555 hydrog WATSON-CRICK A U 13 A O4 U 13 1_555 A A 42 A N6 A 42 1_555 hydrog HOOGSTEEN A U 14 A N3 U 14 1_555 A A 17 A N7 A 17 1_555 hydrog HOOGSTEEN A U 14 A O4 U 14 1_555 A A 17 A N6 A 17 1_555 hydrog A-C MISPAIR A A 16 A N6 A 16 1_555 A C 43 A O2 C 43 1_555 hydrog A-A MISPAIR A A 17 A N6 A 17 1_555 A A 42 A N3 A 42 1_555 hydrog WATSON-CRICK A G 21 A N1 G 21 1_555 A C 40 A N3 C 40 1_555 hydrog WATSON-CRICK A G 21 A N2 G 21 1_555 A C 40 A O2 C 40 1_555 hydrog WATSON-CRICK A G 21 A O6 G 21 1_555 A C 40 A N4 C 40 1_555 hydrog WATSON-CRICK A U 22 A N3 U 22 1_555 A A 39 A N1 A 39 1_555 hydrog WATSON-CRICK A U 22 A O4 U 22 1_555 A A 39 A N6 A 39 1_555 hydrog WATSON-CRICK A C 23 A N3 C 23 1_555 A G 38 A N1 G 38 1_555 hydrog WATSON-CRICK A C 23 A N4 C 23 1_555 A G 38 A O6 G 38 1_555 hydrog WATSON-CRICK A C 23 A O2 C 23 1_555 A G 38 A N2 G 38 1_555 hydrog WATSON-CRICK A C 24 A N3 C 24 1_555 A G 37 A N1 G 37 1_555 hydrog WATSON-CRICK A C 24 A N4 C 24 1_555 A G 37 A O6 G 37 1_555 hydrog WATSON-CRICK A C 24 A O2 C 24 1_555 A G 37 A N2 G 37 1_555 hydrog WATSON-CRICK A C 25 A N3 C 25 1_555 A G 36 A N1 G 36 1_555 hydrog WATSON-CRICK A C 25 A N4 C 25 1_555 A G 36 A O6 G 36 1_555 hydrog WATSON-CRICK A C 25 A O2 C 25 1_555 A G 36 A N2 G 36 1_555 hydrog WATSON-CRICK A A 26 A N1 A 26 1_555 A U 35 A N3 U 35 1_555 hydrog WATSON-CRICK A A 26 A N6 A 26 1_555 A U 35 A O4 U 35 1_555 hydrog WATSON-CRICK A G 27 A N1 G 27 1_555 A C 34 A N3 C 34 1_555 hydrog WATSON-CRICK A G 27 A N2 G 27 1_555 A C 34 A O2 C 34 1_555 hydrog WATSON-CRICK A G 27 A O6 G 27 1_555 A C 34 A N4 C 34 1_555 hydrog WATSON-CRICK A C 28 A N3 C 28 1_555 A G 32 A N1 G 32 1_555 hydrog WATSON-CRICK A C 28 A N4 C 28 1_555 A G 32 A O6 G 32 1_555 hydrog WATSON-CRICK A C 28 A O2 C 28 1_555 A G 32 A N2 G 32 1_555 RNA riboswitch, DHF, RNA 8XZL PDB 1 1 8XZL 1 53 8XZL 1 53 8XZL A 1 1 53 19 P 21 21 21