0.026236 0.015147 0.000000 0.000000 0.030294 0.000000 0.000000 0.000000 0.006135 0.00000 0.00000 0.00000 3.54356 2.42580 25.62398 1.50364 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 16.26893 3.65395 3.58509 77.28589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0.51345 0.48472 24.73122 6.32584 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.01032 2.96436 19.97189 1.75589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.49882 3.47563 15.80542 1.70748 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.51135 5.44231 1.42069 35.72801 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.55732 6.39887 1.23737 29.19336 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0000-0001-5394-5663 Terrell, J.R. 0000-0001-5225-5089 Wilson, W.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.000 90.000 120.000 38.116 38.116 162.999 205083.258 C17 H14 N6 O S 350.398 (2M)-2-[(5P)-5-(5-carbamimidoylthiophen-2-yl)furan-2-yl]-1H-benzimidazole-6-carboximidamide non-polymer Ca 2 40.078 CALCIUM ION non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Y 1 N C Y 2 N C Y 3 N C Y 4 N C Y 5 N C N 6 N C Y 7 N C Y 8 N C Y 9 N C Y 10 N C Y 11 N C Y 12 N C Y 13 N C Y 14 N C N 15 N C Y 16 N C Y 17 N C N 18 N N N 19 N N Y 20 N N N 21 N N N 22 N N Y 23 N N Y 24 N O Y 25 N S N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N CA N 41 N O N 42 N P N 43 N O N 44 N O N 45 N O N 46 N C N 47 R C N 48 N O N 49 S C N 50 N O N 51 N C N 52 R C Y 53 N N Y 54 N C Y 55 N N Y 56 N C Y 57 N C N 58 N N Y 59 N N Y 60 N C Y 61 N N Y 62 N C N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N O N 78 N P N 79 N O N 80 N O N 81 N O N 82 N C N 83 R C N 84 N O N 85 S C N 86 N O N 87 N C N 88 R C N 89 N N N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N C N 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 N C N 122 R C Y 123 N N Y 124 N C Y 125 N N Y 126 N C N 127 N C N 128 N O N 129 N N N 130 N C N 131 N N N 132 N N Y 133 N C N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N O N 149 N P N 150 N O N 151 N O N 152 N O N 153 N C N 154 R C N 155 N O N 156 S C N 157 N O N 158 N C N 159 R C N 160 N N N 161 N C N 162 N O N 163 N N N 164 N C N 165 N O N 166 N C N 167 N C N 168 N C N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N O N 185 N H N 186 N H N 1 N sing N 2 N doub N 3 N sing Y 4 N doub Y 5 N sing Y 6 N doub Y 7 N sing Y 8 N doub N 9 N sing Y 10 N doub Y 11 N sing Y 12 N doub N 13 N sing Y 14 N doub Y 15 N sing Y 16 N doub N 17 N sing N 18 N sing N 19 N doub Y 20 N sing Y 21 N sing Y 22 N sing Y 23 N sing Y 24 N doub Y 25 N sing Y 26 N sing Y 27 N sing Y 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing Y 66 N sing Y 67 N sing Y 68 N doub N 69 N sing Y 70 N sing Y 71 N sing Y 72 N doub N 73 N sing Y 74 N doub N 75 N sing N 76 N sing Y 77 N sing Y 78 N doub N 79 N sing Y 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing Y 139 N sing Y 140 N sing Y 141 N doub N 142 N sing Y 143 N sing N 144 N sing Y 145 N doub N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing To Be Published 0353 Structural Examination of DNA Minor Groove Binding by Diamidine Stacked Dimers 0000-0001-5394-5663 0000-0001-5225-5089 10.2210/pdb8voe/pdb pdb_00008voe 100 1 N PIXEL 2023-03-24 DECTRIS EIGER X 16M Horizontal DCM SINGLE WAVELENGTH M x-ray 1 0.979346 1.0 17-ID-2 NSLS-II 0.979346 SYNCHROTRON NSLS-II BEAMLINE 17-ID-2 4898.191 DNA (5'-D(*GP*CP*TP*GP*GP*AP*TP*TP*AP*AP*TP*CP*CP*AP*GP*C)-3') 1 syn polymer 350.398 (2M)-2-[(5P)-5-(5-carbamimidoylthiophen-2-yl)furan-2-yl]-1H-benzimidazole-6-carboximidamide 1 syn non-polymer 40.078 CALCIUM ION 7 syn non-polymer 18.015 water 18 nat water no no (DG)(DC)(DT)(DG)(DG)(DA)(DT)(DT)(DA)(DA)(DT)(DC)(DC)(DA)(DG)(DC) GCTGGATTAATCCAGC A polydeoxyribonucleotide n n n n n n n n n n n n n n n n 1 2.33 47.12 VAPOR DIFFUSION, HANGING DROP 8.6 10mM HEPES, pH=8.6, 600mM CaCl2, 42% PEG200 mixed 1:1 with 1mM DNA duplex containing 3.5 stoichiometric equivalents of DB1992 295 -0.815 1 19 A 1 A 16 -0.817 A_DG1:DC16_A 1 -8.433 0.054 -0.074 -0.064 -8.712 1 19 A 2 A 15 -2.838 A_DC2:DG15_A 2 -8.900 0.120 0.274 -0.134 -8.508 1 20 A 3 A 14 2.247 A_DT3:DA14_A 3 -21.118 0.036 0.249 -0.014 -8.148 1 19 A 4 A 13 -1.840 A_DG4:DC13_A 4 -10.123 -0.399 -0.196 -0.097 -2.330 1 19 A 5 A 12 -0.254 A_DG5:DC12_A 5 -14.452 0.228 -0.107 -0.106 -5.221 1 20 A 6 A 11 -3.987 A_DA6:DT11_A 6 -17.635 0.172 0.277 -0.086 -10.450 1 20 A 7 A 10 -2.877 A_DT7:DA10_A 7 -13.981 0.166 0.185 -0.126 -5.480 1 20 A 8 A 9 2.340 A_DT8:DA9_A 8 -9.254 -0.099 0.069 -0.242 5.480 1 20 A 9 A 8 2.340 A_DA9:DT8_A 9 -9.254 0.099 0.069 -0.242 10.450 1 20 A 10 A 7 -2.877 A_DA10:DT7_A 10 -13.981 -0.166 0.185 -0.126 5.221 1 20 A 11 A 6 -3.987 A_DT11:DA6_A 11 -17.635 -0.172 0.277 -0.086 2.330 1 19 A 12 A 5 -0.254 A_DC12:DG5_A 12 -14.452 -0.228 -0.107 -0.106 8.148 1 19 A 13 A 4 -1.840 A_DC13:DG4_A 13 -10.123 0.399 -0.196 -0.097 8.508 1 20 A 14 A 3 2.247 A_DA14:DT3_A 14 -21.118 -0.036 0.249 -0.014 8.712 1 19 A 15 A 2 -2.838 A_DG15:DC2_A 15 -8.900 -0.120 0.274 -0.134 0.815 1 19 A 16 A 1 -0.817 A_DC16:DG1_A 16 -8.433 -0.054 -0.074 -0.064 3.576 32.772 A A 1 2 -1.912 A A 16 15 3.419 -1.074 -1.135 -0.691 AA_DG1DC2:DG15DC16_AA 1 -5.384 9.585 32.322 -1.025 1.014 3.172 30.316 A A 2 3 11.755 A A 15 14 3.273 6.107 -0.470 -0.122 AA_DC2DT3:DA14DG15_AA 2 0.791 -1.523 29.699 -1.459 1.058 3.421 41.824 A A 3 4 0.976 A A 14 13 3.399 0.696 0.132 1.391 AA_DT3DG4:DC13DA14_AA 3 3.332 -4.673 41.691 1.872 0.179 3.312 28.016 A A 4 5 16.524 A A 13 12 3.299 7.895 0.756 0.560 AA_DG4DG5:DC12DC13_AA 4 -0.491 1.028 26.897 -0.768 -1.682 3.591 42.766 A A 5 6 -0.826 A A 12 11 3.375 -0.598 -1.456 0.695 AA_DG5DA6:DT11DC12_AA 5 -9.109 12.580 41.825 1.018 1.014 3.564 30.335 A A 6 7 -0.421 A A 11 10 3.559 -0.220 0.252 -0.322 AA_DA6DT7:DA10DT11_AA 6 0.383 -0.732 30.332 -0.566 -0.398 3.339 31.710 A A 7 8 5.298 A A 10 9 3.274 2.885 0.540 0.415 AA_DT7DT8:DA9DA10_AA 7 3.774 -6.932 31.362 0.220 -0.282 3.273 39.011 A A 8 9 3.594 A A 9 8 3.183 2.398 0.000 1.611 AA_DT8DA9:DT8DA9_AA 8 0.000 0.000 38.940 2.126 0.000 3.339 31.710 A A 9 10 5.298 A A 8 7 3.274 2.885 -0.540 0.415 AA_DA9DA10:DT7DT8_AA 9 -3.774 6.932 31.362 0.220 0.282 3.564 30.335 A A 10 11 -0.421 A A 7 6 3.559 -0.220 -0.252 -0.322 AA_DA10DT11:DA6DT7_AA 10 -0.383 0.732 30.332 -0.566 0.398 3.591 42.766 A A 11 12 -0.826 A A 6 5 3.375 -0.598 1.456 0.695 AA_DT11DC12:DG5DA6_AA 11 9.109 -12.580 41.825 1.018 -1.014 3.312 28.016 A A 12 13 16.524 A A 5 4 3.299 7.895 -0.756 0.560 AA_DC12DC13:DG4DG5_AA 12 0.491 -1.028 26.897 -0.768 1.682 3.421 41.824 A A 13 14 0.976 A A 4 3 3.399 0.696 -0.132 1.391 AA_DC13DA14:DT3DG4_AA 13 -3.332 4.673 41.691 1.872 -0.179 3.172 30.316 A A 14 15 11.755 A A 3 2 3.273 6.107 0.470 -0.122 AA_DA14DG15:DC2DT3_AA 14 -0.791 1.523 29.699 -1.459 -1.058 3.576 32.772 A A 15 16 -1.912 A A 2 1 3.419 -1.074 1.135 -0.691 AA_DG15DC16:DG1DC2_AA 15 5.384 -9.585 32.322 -1.025 -1.014 repository Initial release 1 0 2025-01-22 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM111749 wdw@gsu.edu 0000-0001-5225-5089 W Wilson David principal investigator/group leader N RCSB N RCSB 2024-01-15 REL REL A1AB3 A1AB3 SUBJECT OF INVESTIGATION CA CA SUBJECT OF INVESTIGATION A1AB3 (2M)-2-[(5P)-5-(5-carbamimidoylthiophen-2-yl)furan-2-yl]-1H-benzimidazole-6-carboximidamide CA CALCIUM ION HOH water 32630 synthetic construct sample 1 16 Y N 8V5J PDB experimental model 992 101 2 A1AB3 A1AB3 101 A CA 1 3 CA CA 102 A CA 2 3 CA CA 103 A CA 3 3 CA CA 104 A CA 4 3 CA CA 105 A CA 5 3 CA CA 106 A CA 6 3 CA CA 107 A CA 7 3 CA CA 108 A HOH 6 4 HOH HOH 201 A HOH 7 4 HOH HOH 202 A HOH 15 4 HOH HOH 203 A HOH 13 4 HOH HOH 204 A HOH 10 4 HOH HOH 205 A HOH 14 4 HOH HOH 206 A HOH 8 4 HOH HOH 207 A HOH 12 4 HOH HOH 208 A HOH 11 4 HOH HOH 209 A HOH 5 4 HOH HOH 210 A HOH 18 4 HOH HOH 211 A HOH 20 4 HOH HOH 212 A HOH 4 4 HOH HOH 213 A HOH 19 4 HOH HOH 214 A HOH 9 4 HOH HOH 215 A HOH 1 4 HOH HOH 216 A HOH 3 4 HOH HOH 217 A HOH 2 4 HOH HOH 218 A DG 1 n 1 DG 1 A DC 2 n 2 DC 2 A DT 3 n 3 DT 3 A DG 4 n 4 DG 4 A DG 5 n 5 DG 5 A DA 6 n 6 DA 6 A DT 7 n 7 DT 7 A DT 8 n 8 DT 8 A DA 9 n 9 DA 9 A DA 10 n 10 DA 10 A DT 11 n 11 DT 11 A DC 12 n 12 DC 12 A DC 13 n 13 DC 13 A DA 14 n 14 DA 14 A DG 15 n 15 DG 15 A DC 16 n 16 DC 16 A 0.242574429911 0.540090227703 -0.226172050968 0.57625640513 -0.968351779106 4.07629626325 0.0684250488011 -0.106214479429 0.00762832194543 0.0566243941399 -0.00332311476257 0.141836492147 0.275552561753 -1.07728979114 -0.0758734571294 0.247840856174 0.006086917276 -0.0105114068049 0.454031720538 -0.0708282826812 0.236310941989 refined -10.7968882693 -20.5944964984 54.265971402 X-RAY DIFFRACTION A 1 A S 20 J X-RAY DIFFRACTION 1 all author_and_software_defined_assembly PISA 2 dimeric 1770 -47 7260 A DC 2 A OP1 DC 2 1_555 A CA 106 G CA CA 1_555 A DC 2 A OP1 DC 2 1_555 0.0 A DC 2 A OP1 DC 2 1_555 A CA 106 G CA CA 1_555 A HOH 211 J O HOH 1_555 97.3 A DC 2 A OP1 DC 2 1_555 A CA 106 G CA CA 1_555 A HOH 211 J O HOH 1_555 97.3 A DC 2 A OP1 DC 2 1_555 A CA 106 G CA CA 1_555 A HOH 211 J O HOH 2_455 161.5 A DC 2 A OP1 DC 2 1_555 A CA 106 G CA CA 1_555 A HOH 211 J O HOH 2_455 161.5 A HOH 211 J O HOH 1_555 A CA 106 G CA CA 1_555 A HOH 211 J O HOH 2_455 73.0 A DC 2 A OP2 DC 2 1_555 A CA 108 I CA CA 3_445 A DT 3 A OP1 DT 3 1_555 22.8 A DA 6 A OP1 DA 6 1_555 A CA 102 C CA CA 1_555 A DA 6 A OP1 DA 6 1_555 0.0 A DA 6 A OP1 DA 6 1_555 A CA 102 C CA CA 1_555 A HOH 218 J O HOH 1_555 161.1 A DA 6 A OP1 DA 6 1_555 A CA 102 C CA CA 1_555 A HOH 218 J O HOH 1_555 161.1 A DA 6 A OP1 DA 6 1_555 A CA 102 C CA CA 1_555 A HOH 218 J O HOH 3_545 97.5 A DA 6 A OP1 DA 6 1_555 A CA 102 C CA CA 1_555 A HOH 218 J O HOH 3_545 97.5 A HOH 218 J O HOH 1_555 A CA 102 C CA CA 1_555 A HOH 218 J O HOH 3_545 94.5 A DA 6 A OP2 DA 6 1_555 A CA 103 D CA CA 1_555 A DA 6 A OP2 DA 6 1_555 0.0 A DA 6 A OP2 DA 6 1_555 A CA 103 D CA CA 1_555 A HOH 217 J O HOH 1_555 165.4 A DA 6 A OP2 DA 6 1_555 A CA 103 D CA CA 1_555 A HOH 217 J O HOH 1_555 165.4 A DA 6 A OP2 DA 6 1_555 A CA 103 D CA CA 1_555 A HOH 217 J O HOH 3_545 85.5 A DA 6 A OP2 DA 6 1_555 A CA 103 D CA CA 1_555 A HOH 217 J O HOH 3_545 85.5 A HOH 217 J O HOH 1_555 A CA 103 D CA CA 1_555 A HOH 217 J O HOH 3_545 96.2 A DG 15 A OP1 DG 15 1_555 A CA 104 E CA CA 1_555 A HOH 210 J O HOH 1_555 87.8 A DG 15 A OP1 DG 15 1_555 A CA 104 E CA CA 1_555 A HOH 212 J O HOH 1_555 88.3 A HOH 210 J O HOH 1_555 A CA 104 E CA CA 1_555 A HOH 212 J O HOH 1_555 154.8 A DG 15 A OP1 DG 15 1_555 A CA 104 E CA CA 1_555 A HOH 213 J O HOH 1_555 90.6 A HOH 210 J O HOH 1_555 A CA 104 E CA CA 1_555 A HOH 213 J O HOH 1_555 105.3 A HOH 212 J O HOH 1_555 A CA 104 E CA CA 1_555 A HOH 213 J O HOH 1_555 49.9 A DG 15 A OP1 DG 15 1_555 A CA 104 E CA CA 1_555 A HOH 214 J O HOH 1_555 101.2 A HOH 210 J O HOH 1_555 A CA 104 E CA CA 1_555 A HOH 214 J O HOH 1_555 141.5 A HOH 212 J O HOH 1_555 A CA 104 E CA CA 1_555 A HOH 214 J O HOH 1_555 63.6 A HOH 213 J O HOH 1_555 A CA 104 E CA CA 1_555 A HOH 214 J O HOH 1_555 111.9 A DG 15 A OP1 DG 15 1_555 A CA 104 E CA CA 1_555 A HOH 216 J O HOH 1_555 173.9 A HOH 210 J O HOH 1_555 A CA 104 E CA CA 1_555 A HOH 216 J O HOH 1_555 92.3 A HOH 212 J O HOH 1_555 A CA 104 E CA CA 1_555 A HOH 216 J O HOH 1_555 89.0 A HOH 213 J O HOH 1_555 A CA 104 E CA CA 1_555 A HOH 216 J O HOH 1_555 83.5 A HOH 214 J O HOH 1_555 A CA 104 E CA CA 1_555 A HOH 216 J O HOH 1_555 82.5 A DC 16 A OP1 DC 16 1_555 A CA 105 F CA CA 1_555 A DC 16 A OP1 DC 16 1_555 0.0 A DC 16 A OP1 DC 16 1_555 A CA 105 F CA CA 1_555 A HOH 208 J O HOH 1_555 90.6 A DC 16 A OP1 DC 16 1_555 A CA 105 F CA CA 1_555 A HOH 208 J O HOH 1_555 90.6 A DC 16 A OP1 DC 16 1_555 A CA 105 F CA CA 1_555 A HOH 208 J O HOH 2_445 111.7 A DC 16 A OP1 DC 16 1_555 A CA 105 F CA CA 1_555 A HOH 208 J O HOH 2_445 111.7 A HOH 208 J O HOH 1_555 A CA 105 F CA CA 1_555 A HOH 208 J O HOH 2_445 87.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 17_435 x-y-2/3,-y-4/3,-z+2/3 crystal symmetry operation 0.0000000000 -44.0125657209 108.6660000000 1 A CA 106 G CA 1 5.52 0.30 108.30 113.82 A A A O4' C1' N9 DG DG DG 5 5 5 N 1 -12.52 1.50 119.60 107.08 A A A OP1 P OP2 DA DA DA 6 6 6 N 1 -5.78 0.90 105.70 99.92 A A A O5' P OP1 DA DA DA 14 14 14 N 1 9.36 1.50 119.60 128.96 A A A OP1 P OP2 DG DG DG 15 15 15 N 1 2.67 0.30 108.30 110.97 A A A O4' C1' N9 DG DG DG 15 15 15 N 1 A A O3' C3' DG DG 4 4 -0.039 0.006 1.419 1.380 N 1 A A P O5' DA DA 6 6 -0.075 0.010 1.593 1.518 N 1 A A O3' C3' DA DA 6 6 -0.056 0.006 1.419 1.363 N 1 A A O3' C3' DT DT 8 8 -0.048 0.006 1.419 1.371 N 1 A A O3' C3' DG DG 15 15 -0.042 0.006 1.419 1.377 N 42.98 0.2706 0.2493 0.2515 1.77 27.17 476 4262 4738 10.05 99.31 0.2304 1 FREE R-VALUE 1.38 MOLECULAR REPLACEMENT 40.0848 0.9000 1.1100 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 1.77 27.17 18 375 32 325 0 0.0189 392 2.0951 601 0.0994 63 0.0149 22 31.6895 178 0.3400 0.2457 2.03 154 1380 99.16 0.3529 0.3293 2.55 156 1409 99.68 0.2435 0.2286 27.17 166 1473 99.09 30.04 1.77 27.17 8VOE 4763 0.998 1 0.07294 0.02122 0.07613 1 19.88 14.1 99.25 0.5833 1.77 1.834 4.86 476 0.998 0.999 0.1601 0.6054 1 14.1 98.74 refinement PHENIX 1.19.2_4158 data reduction XDS data scaling Aimless phasing PHASER 155 trigonal R 3 2 :H R 3 2" x,y,z -y,x-y,z -x+y,-x,z x-y,-y,-z -x,-x+y,-z y,x,-z x+1/3,y+2/3,z+2/3 -y+1/3,x-y+2/3,z+2/3 -x+y+1/3,-x+2/3,z+2/3 x-y+1/3,-y+2/3,-z+2/3 -x+1/3,-x+y+2/3,-z+2/3 y+1/3,x+2/3,-z+2/3 x+2/3,y+1/3,z+1/3 -y+2/3,x-y+1/3,z+1/3 -x+y+2/3,-x+1/3,z+1/3 x-y+2/3,-y+1/3,-z+1/3 -x+2/3,-x+y+1/3,-z+1/3 y+2/3,x+1/3,-z+1/3 N The DNA 16-mer sequence 5'-GCTGGATTAATCCAGC-3' bound by a DB1992 stacked dimer 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N metalc 2.725 A DC 2 A OP1 DC 2 1_555 A CA 106 G CA CA 1_555 metalc 2.565 A DC 2 A OP1 DC 2 1_555 A CA 106 G CA CA 2_455 metalc 3.066 A DC 2 A OP2 DC 2 1_555 A CA 108 I CA CA 3_445 metalc 2.022 A DT 3 A OP1 DT 3 1_555 A CA 108 I CA CA 1_555 metalc 2.410 A DA 6 A OP1 DA 6 1_555 A CA 102 C CA CA 1_555 metalc 2.114 A DA 6 A OP1 DA 6 1_555 A CA 102 C CA CA 3_545 metalc 2.566 A DA 6 A OP2 DA 6 1_555 A CA 103 D CA CA 1_555 metalc 2.094 A DA 6 A OP2 DA 6 1_555 A CA 103 D CA CA 3_545 metalc 2.285 A DG 15 A OP1 DG 15 1_555 A CA 104 E CA CA 1_555 metalc 2.026 A DC 16 A OP1 DC 16 1_555 A CA 105 F CA CA 1_555 metalc 2.215 A DC 16 A OP1 DC 16 1_555 A CA 105 F CA CA 3_545 metalc 2.388 A CA 102 C CA CA 1_555 A HOH 218 J O HOH 1_555 metalc 2.015 A CA 102 C CA CA 1_555 A HOH 218 J O HOH 3_545 metalc 2.152 A CA 103 D CA CA 1_555 A HOH 217 J O HOH 1_555 metalc 2.199 A CA 103 D CA CA 1_555 A HOH 217 J O HOH 3_545 metalc 2.418 A CA 104 E CA CA 1_555 A HOH 210 J O HOH 1_555 metalc 2.565 A CA 104 E CA CA 1_555 A HOH 212 J O HOH 1_555 metalc 2.764 A CA 104 E CA CA 1_555 A HOH 213 J O HOH 1_555 metalc 2.478 A CA 104 E CA CA 1_555 A HOH 214 J O HOH 1_555 metalc 2.353 A CA 104 E CA CA 1_555 A HOH 216 J O HOH 1_555 metalc 2.337 A CA 105 F CA CA 1_555 A HOH 208 J O HOH 1_555 metalc 2.088 A CA 105 F CA CA 1_555 A HOH 208 J O HOH 2_445 metalc 2.724 A CA 106 G CA CA 1_555 A HOH 211 J O HOH 1_555 metalc 2.592 A CA 106 G CA CA 1_555 A HOH 211 J O HOH 2_455 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 16 A N3 DC 16 17_435 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 16 A O2 DC 16 17_435 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 16 A N4 DC 16 17_435 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 A DG 15 A N1 DG 15 17_435 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 A DG 15 A O6 DG 15 17_435 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 A DG 15 A N2 DG 15 17_435 hydrog WATSON-CRICK A DT 3 A N3 DT 3 1_555 A DA 14 A N1 DA 14 17_435 hydrog WATSON-CRICK A DT 3 A O4 DT 3 1_555 A DA 14 A N6 DA 14 17_435 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 A DC 13 A N3 DC 13 17_435 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 A DC 13 A O2 DC 13 17_435 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 A DC 13 A N4 DC 13 17_435 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 A DC 12 A N3 DC 12 17_435 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 A DC 12 A O2 DC 12 17_435 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 A DC 12 A N4 DC 12 17_435 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 A DT 11 A N3 DT 11 17_435 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 A DT 11 A O4 DT 11 17_435 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 A DA 10 A N1 DA 10 17_435 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 A DA 10 A N6 DA 10 17_435 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 A DA 9 A N1 DA 9 17_435 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 A DA 9 A N6 DA 9 17_435 hydrog WATSON-CRICK A DA 9 A N1 DA 9 1_555 A DT 8 A N3 DT 8 17_435 hydrog WATSON-CRICK A DA 9 A N6 DA 9 1_555 A DT 8 A O4 DT 8 17_435 hydrog WATSON-CRICK A DA 10 A N1 DA 10 1_555 A DT 7 A N3 DT 7 17_435 hydrog WATSON-CRICK A DA 10 A N6 DA 10 1_555 A DT 7 A O4 DT 7 17_435 hydrog WATSON-CRICK A DT 11 A N3 DT 11 1_555 A DA 6 A N1 DA 6 17_435 hydrog WATSON-CRICK A DT 11 A O4 DT 11 1_555 A DA 6 A N6 DA 6 17_435 hydrog WATSON-CRICK A DC 12 A N3 DC 12 1_555 A DG 5 A N1 DG 5 17_435 hydrog WATSON-CRICK A DC 12 A N4 DC 12 1_555 A DG 5 A O6 DG 5 17_435 hydrog WATSON-CRICK A DC 12 A O2 DC 12 1_555 A DG 5 A N2 DG 5 17_435 hydrog WATSON-CRICK A DC 13 A N3 DC 13 1_555 A DG 4 A N1 DG 4 17_435 hydrog WATSON-CRICK A DC 13 A N4 DC 13 1_555 A DG 4 A O6 DG 4 17_435 hydrog WATSON-CRICK A DC 13 A O2 DC 13 1_555 A DG 4 A N2 DG 4 17_435 hydrog WATSON-CRICK A DA 14 A N1 DA 14 1_555 A DT 3 A N3 DT 3 17_435 hydrog WATSON-CRICK A DA 14 A N6 DA 14 1_555 A DT 3 A O4 DT 3 17_435 hydrog WATSON-CRICK A DG 15 A N1 DG 15 1_555 A DC 2 A N3 DC 2 17_435 hydrog WATSON-CRICK A DG 15 A N2 DG 15 1_555 A DC 2 A O2 DC 2 17_435 hydrog WATSON-CRICK A DG 15 A O6 DG 15 1_555 A DC 2 A N4 DC 2 17_435 hydrog WATSON-CRICK A DC 16 A N3 DC 16 1_555 A DG 1 A N1 DG 1 17_435 hydrog WATSON-CRICK A DC 16 A N4 DC 16 1_555 A DG 1 A O6 DG 1 17_435 hydrog WATSON-CRICK A DC 16 A O2 DC 16 1_555 A DG 1 A N2 DG 1 17_435 DNA DNA duplex, DNA, 16-mer, self-complementary, diamidine, minor-groove binder 8VOE PDB 1 1 8VOE 1 16 8VOE 1 16 8VOE A 1 1 16 155 H 3 2 R 3 2"