1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0001-5389-3859 Yang, B. 0009-0001-4238-5303 Wang, Q. 0009-0008-9066-9061 Sun, S.W. 0000-0002-2147-5959 Zhang, X. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 90.00 90.00 90.00 1.00 1.00 1.00 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 R C N 148 N C N 149 N O N 150 N C N 151 N S N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N O N 161 N P N 162 N O N 163 N O N 164 N O N 165 N C N 166 R C N 167 N O N 168 S C N 169 N O N 170 R C N 171 N O N 172 R C Y 173 N N Y 174 N C Y 175 N N Y 176 N C N 177 N C N 178 N O N 179 N N N 180 N C N 181 N N N 182 N N Y 183 N C N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N O N 206 N N N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N C N 224 N C N 225 N O N 226 N O N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 N C N 239 N C N 240 N O N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N N Y 254 N C Y 255 N C Y 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 S C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N N N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C N 342 N C N 343 N S N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C N 385 N C N 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C N 402 N O N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 R C N 416 N O N 417 N C N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N N Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N N N 456 S C N 457 N C N 458 N O N 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C Y 465 N C N 466 N O N 467 N O N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N O N 480 N P N 481 N O N 482 N O N 483 N O N 484 N C N 485 R C N 486 N O N 487 S C N 488 N O N 489 R C N 490 N O N 491 R C N 492 N N N 493 N C N 494 N O N 495 N N N 496 N C N 497 N O N 498 N C N 499 N C N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N N N 514 S C N 515 N C N 516 N O N 517 N C N 518 N C N 519 N C N 520 N O N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing Y 182 N sing Y 183 N sing Y 184 N doub N 185 N sing Y 186 N sing N 187 N sing Y 188 N doub N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N sing Y 256 N doub Y 257 N doub N 258 N sing Y 259 N sing N 260 N sing Y 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub N 366 N sing Y 367 N doub N 368 N sing Y 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N doub N 426 N sing N 427 N sing N 428 N sing N 429 N sing Y 430 N doub Y 431 N sing Y 432 N sing N 433 N sing Y 434 N doub Y 435 N sing Y 436 N sing N 437 N sing Y 438 N sing Y 439 N doub N 440 N sing Y 441 N doub N 442 N sing Y 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N doub N 454 N sing N 455 N sing N 456 N sing N 457 N sing Y 458 N doub Y 459 N sing Y 460 N sing N 461 N sing Y 462 N doub N 463 N sing Y 464 N doub N 465 N sing Y 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N doub N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N doub N 498 N sing N 499 N sing N 500 N sing N 501 N doub N 502 N sing N 503 N doub N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N doub N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing To Be Published 0353 HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation 2-L form RNA 0000-0001-5389-3859 0009-0001-4238-5303 0009-0008-9066-9061 0000-0002-2147-5959 10.2210/pdb9vmd/pdb pdb_00009vmd 9VMD 170015 4.38 FSC 0.143 CUT-OFF POINT REL 2025-06-27 PDBJ 2026-06-10 2026-06-10 HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation2 splitRNA 8.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 1, 2, 3, 4 dimer3C-YDF-RNA-CLASS4 0 MULTIPLE SOURCES COMPLEX NO 12131 rhinovirus B14 511693 Escherichia coli BL21 PARTICLE 1 1 SINGLE PARTICLE 60.0 DIRECT ELECTRON DE-16 (4k x 4k) 300 FIELD EMISSION GUN FLOOD BEAM TFS KRIOS BRIGHT FIELD 2.7 1500 500 1 COPPER 300 Quantifoil R1.2/1.3 PARTICLE SELECTION 1 MODEL REFINEMENT PHENIX 1.20.1_4487 IMAGE ACQUISITION 1 MASKING CTF CORRECTION 1 LAYERLINE INDEXING DIFFRACTION INDEXING MODEL FITTING OTHER INITIAL EULER ASSIGNMENT 1 FINAL EULER ASSIGNMENT 1 CLASSIFICATION 1 RECONSTRUCTION 1 VOLUME SELECTION 1 1 1 SERIES ALIGNMENT 1 1 1 MOLECULAR REPLACEMENT 1 1 1 LATTICE DISTORTION CORRECTION 1 1 1 SYMMETRY DETERMINATION 1 1 1 CRYSTALLOGRAPHY MERGING 1 1 1 NO NO NO YES 281.15 ETHANE 9VMD 100 FEI VITROBOT MARK IV 19836.695 Protease 3C 3.4.22.28 1 man polymer 13833.439 YDF heavy chain 1 man polymer 11299.447 YDF light chain 1 man polymer 26533.643 RNA (83-MER) 1 syn polymer Picornain 3C,P3C no no PNTEFALSLLRKNIMTITTSKGEFTGLGIHDRVCVIPTHAQPGDDVLVNGQKIRVKDKYKLVDPENINLELTVLTLDRNE KFRDIRGFISEDLEGVDATLVVHSNNFTNTILEVGPVTMAGLINLSSTPTNRMIRYDYATKTGQCGGVLCATGKIFGIHV GGNGRQGFSAQLKKQYFVEK PNTEFALSLLRKNIMTITTSKGEFTGLGIHDRVCVIPTHAQPGDDVLVNGQKIRVKDKYKLVDPENINLELTVLTLDRNE KFRDIRGFISEDLEGVDATLVVHSNNFTNTILEVGPVTMAGLINLSSTPTNRMIRYDYATKTGQCGGVLCATGKIFGIHV GGNGRQGFSAQLKKQYFVEK O polypeptide(L) no no QVQLLQSGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY LQMNSLRAEDTAVYYCARVGKGGYDFWSGSGYMDVWGKGTTVTVSSG QVQLLQSGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY LQMNSLRAEDTAVYYCARVGKGGYDFWSGSGYMDVWGKGTTVTVSSG P polypeptide(L) no no SYVLTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAM DEADYYCQAWDSSTVVFGGGTKLTVLG SYVLTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAM DEADYYCQAWDSSTVVFGGGTKLTVLG Q polypeptide(L) no no GGGAAACAGCGGAUGGGUAUCCCACCAUUCGACCCAUUGGGUGUAGUACUCUGGUACUAUGUACCUUUGUACGCCUGUUU CCC GGGAAACAGCGGAUGGGUAUCCCACCAUUCGACCCAUUGGGUGUAGUACUCUGGUACUAUGUACCUUUGUACGCCUGUUU CCC R polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 180 12131 rhinovirus B14 511693 Escherichia coli BL21 Biological sequence human sample 1 127 9606 Homo sapiens 511693 Escherichia coli BL21 Biological sequence human sample 1 107 9606 Homo sapiens 511693 Escherichia coli BL21 Biological sequence -4.822 1 19 R 1 R 83 -8.434 R_G1:C83_R 1 12.007 -0.480 -0.595 -0.469 3.488 1 19 R 2 R 82 -4.807 R_G2:C82_R 2 8.898 -0.105 -0.535 -0.508 -2.447 1 19 R 3 R 81 -0.021 R_G3:C81_R 3 -2.671 -0.458 -0.703 -0.511 -8.464 1 20 R 4 R 80 16.512 R_A4:U80_R 4 1.020 0.454 -0.548 -0.091 -1.728 1 20 R 5 R 79 -7.469 R_A5:U79_R 5 7.018 -0.428 -0.596 -0.451 6.335 1 20 R 6 R 78 -6.243 R_A6:U78_R 6 6.908 -0.173 -0.980 -0.525 15.823 1 19 R 7 R 77 -6.458 R_C7:G77_R 7 4.175 -0.858 -1.537 -0.373 29.967 1 28 R 9 R 76 9.558 R_G9:U76_R 8 16.960 -2.878 0.112 -0.409 13.395 11 R 43 R 75 106.254 R_G43:C75_R 9 -25.014 1.068 -0.919 2.368 7.875 1 19 R 25 R 16 -3.032 R_C25:G16_R 10 -21.487 0.152 0.401 -0.420 -0.820 1 19 R 26 R 15 -1.290 R_C26:G15_R 11 -17.724 1.049 0.302 -0.526 7.982 1 20 R 27 R 14 -4.000 R_A27:U14_R 12 -18.655 -0.640 0.313 -0.342 -1.284 1 20 R 28 R 13 -3.913 R_U28:A13_R 13 -20.168 0.492 0.293 -0.317 -4.781 1 28 R 29 R 12 -2.978 R_U29:G12_R 14 -15.165 1.210 0.396 -0.535 -1.977 1 19 R 30 R 11 -1.452 R_C30:G11_R 15 -11.255 1.076 0.249 -0.511 2.668 5 R 31 R 10 52.253 R_G31:C10_R 16 -2.463 -5.874 -0.808 -0.481 6.882 1 20 R 32 R 42 4.280 R_A32:U42_R 17 -15.697 -0.400 -0.793 -0.493 -1.088 1 19 R 33 R 41 2.550 R_C33:G41_R 18 -12.345 0.884 -0.501 -0.461 -4.796 1 19 R 34 R 40 -0.759 R_C34:G40_R 19 -4.633 1.008 -0.155 -0.468 1.280 1 19 R 35 R 39 -1.854 R_C35:G39_R 20 -0.719 1.159 -0.150 -0.537 -24.653 R 45 R 73 23.168 R_A45:G73_R 21 -1.643 1.955 -0.719 1.861 -7.402 1 19 R 46 R 72 4.064 R_G46:C72_R 22 0.477 -0.254 0.671 -0.264 -4.372 1 20 R 47 R 71 2.133 R_U47:A71_R 23 6.643 -1.754 0.305 0.148 10.360 1 20 R 48 R 70 -2.775 R_A48:U70_R 24 13.247 0.053 -0.230 -0.068 29.885 1 19 R 49 R 69 -0.357 R_C49:G69_R 25 7.175 0.110 -1.149 -0.093 47.814 R 51 R 68 18.112 R_C51:U68_R 26 -17.926 -2.249 0.890 -1.290 -8.039 1 19 R 53 R 65 0.728 R_G53:C65_R 27 -1.208 -0.185 -0.904 -0.205 -3.031 1 19 R 54 R 64 -3.614 R_G54:C64_R 28 3.040 -0.095 -0.971 -0.247 2.208 1 20 R 55 R 63 4.183 R_U55:A63_R 29 3.235 0.034 0.148 -0.139 -2.350 1 20 R 56 R 62 3.280 R_A56:U62_R 30 -2.358 0.050 -0.217 -0.081 6.059 1 19 R 57 R 61 -0.013 R_C57:G61_R 31 1.044 0.177 -0.692 -0.231 3.236 34.147 R R 1 2 0.748 R R 83 82 3.269 0.439 0.191 -1.337 RR_G1G2:C82C83_RR 1 -1.974 3.363 34.089 -2.345 -0.636 3.351 31.563 R R 2 3 9.212 R R 82 81 3.653 4.991 0.637 -1.636 RR_G2G3:C81C82_RR 2 -0.279 0.514 31.174 -4.007 -1.227 3.621 36.771 R R 3 4 -0.261 R R 81 80 3.676 -0.165 1.149 -1.536 RR_G3A4:U80C81_RR 3 -1.907 3.025 36.723 -2.409 -2.111 2.900 22.994 R R 4 5 9.258 R R 80 79 3.274 3.673 -1.173 -1.586 RR_A4A5:U79U80_RR 4 1.508 -3.802 22.653 -5.209 3.448 3.190 30.959 R R 5 6 6.043 R R 79 78 3.339 3.219 0.214 -1.366 RR_A5A6:U78U79_RR 5 1.690 -3.173 30.750 -3.181 -0.073 3.309 31.987 R R 6 7 -1.627 R R 78 77 3.254 -0.896 0.125 -1.990 RR_A6C7:G77U78_RR 6 2.068 -3.756 31.910 -3.449 0.149 3.513 38.237 R R 7 9 23.264 R R 77 76 4.639 14.841 -1.290 -1.703 RR_C7G9:U76G77_RR 7 3.779 -5.924 35.142 -5.034 2.589 4.563 67.183 R R 9 43 9.801 R R 76 75 4.240 10.783 1.901 1.200 RR_G9G43:C75U76_RR 8 8.962 -8.146 65.872 0.514 -1.244 3.316 42.052 R R 25 26 2.824 R R 16 15 3.360 2.025 0.241 -1.041 RR_C25C26:G15G16_RR 9 2.263 -3.156 41.947 -1.665 -0.097 1.556 25.427 R R 26 27 38.473 R R 15 14 2.704 15.735 -0.140 -0.938 RR_C26A27:U14G15_RR 10 0.929 -2.270 20.015 -5.443 0.515 3.465 43.045 R R 27 28 -2.482 R R 14 13 3.411 -1.821 0.215 -1.455 RR_A27U28:A13U14_RR 11 -0.246 0.336 43.007 -1.794 -0.318 3.243 36.145 R R 28 29 2.254 R R 13 12 3.288 1.398 -0.035 -1.140 RR_U28U29:G12A13_RR 12 0.181 -0.292 36.118 -2.034 0.082 3.028 30.402 R R 29 30 1.438 R R 12 11 3.082 0.753 -0.149 -1.340 RR_U29C30:G11G12_RR 13 2.389 -4.561 30.301 -2.697 0.732 4.344 -3.468 R R 30 31 -9.133 R R 11 10 3.607 0.436 2.968 -1.702 RR_C30G31:C10G11_RR 14 -3.153 -66.012 -1.375 16.296 -36.496 3.303 59.076 R R 31 32 5.361 R R 10 42 3.118 5.276 -2.116 0.581 RR_G31A32:U42C10_RR 15 -4.805 4.884 58.682 0.324 1.904 3.368 38.954 R R 32 33 5.642 R R 42 41 3.485 3.754 -0.466 -1.365 RR_A32C33:G41U42_RR 16 -3.014 4.531 38.667 -2.525 0.314 3.094 33.027 R R 33 34 11.421 R R 41 40 3.372 6.453 -0.212 -1.124 RR_C33C34:G40G41_RR 17 0.496 -0.877 32.404 -3.069 0.457 2.965 33.294 R R 34 35 5.518 R R 40 39 3.095 3.155 -0.130 -1.107 RR_C34C35:G39G40_RR 18 2.237 -3.912 33.075 -2.421 0.573 3.060 19.534 R R 45 46 11.390 R R 73 72 3.056 3.762 -1.610 -1.575 RR_A45G46:C72G73_RR 19 -6.683 20.231 17.979 -6.433 1.561 3.488 28.806 R R 46 47 2.718 R R 72 71 3.536 1.351 -0.908 -1.977 RR_G46U47:A71C72_RR 20 -1.699 3.418 28.726 -4.299 1.417 2.579 37.568 R R 47 48 10.523 R R 71 70 2.834 6.743 -0.412 -1.208 RR_U47A48:U70A71_RR 21 0.301 -0.469 36.979 -2.609 0.673 2.691 31.751 R R 48 49 9.104 R R 70 69 3.028 4.934 0.020 -1.686 RR_A48C49:G69U70_RR 22 5.874 -10.838 30.833 -3.886 0.920 4.401 38.247 R R 49 51 16.581 R R 69 68 5.655 10.172 0.154 -0.990 RR_C49C51:U68G69_RR 23 20.657 -33.673 30.748 -3.713 4.235 3.449 31.664 R R 53 54 2.171 R R 65 64 3.494 1.184 -0.305 -1.133 RR_G53G54:C64C65_RR 24 0.133 -0.244 31.642 -2.309 0.585 3.527 27.408 R R 54 55 3.936 R R 64 63 3.688 1.862 0.664 -1.610 RR_G54U55:A63C64_RR 25 -1.638 3.462 27.298 -3.906 -1.849 1.628 48.080 R R 55 56 44.667 R R 63 62 3.104 33.117 0.566 -1.079 RR_U55A56:U62A63_RR 26 7.601 -10.252 34.532 -3.568 -0.180 3.279 23.959 R R 56 57 3.252 R R 62 61 3.394 1.349 -0.270 -1.618 RR_A56C57:G61U62_RR 27 1.346 -3.245 23.884 -4.345 1.097 repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release 1 0 2026-06-10 1 0 2026-06-10 1 0 2026-06-10 1 0 1 2026-06-10 1 0 2 2026-06-10 1 0 2026-06-10 1 0 2026-06-10 China National Natural Science Foundation of China (NSFC) 32070170 China National Natural Science Foundation of China (NSFC) 32371272 China National Natural Science Foundation of China (NSFC) 23ZR1442500 yangbei@shanghaitech.edu.cn 0000-0001-5389-3859 Bei Yang principal investigator/group leader 3C-YDF-RNA-SLD-BS2-Lform N PDBJ Y PDBC 2025-06-27 REL 12131 rhinovirus B14 sample 1 83 N PRO 2 n 1 PRO 2 O ASN 3 n 2 ASN 3 O THR 4 n 3 THR 4 O GLU 5 n 4 GLU 5 O PHE 6 n 5 PHE 6 O ALA 7 n 6 ALA 7 O LEU 8 n 7 LEU 8 O SER 9 n 8 SER 9 O LEU 10 n 9 LEU 10 O LEU 11 n 10 LEU 11 O ARG 12 n 11 ARG 12 O LYS 13 n 12 LYS 13 O ASN 14 n 13 ASN 14 O ILE 15 n 14 ILE 15 O MET 16 n 15 MET 16 O THR 17 n 16 THR 17 O ILE 18 n 17 ILE 18 O THR 19 n 18 THR 19 O THR 20 n 19 THR 20 O SER 21 n 20 SER 21 O LYS 22 n 21 LYS 22 O GLY 23 n 22 GLY 23 O GLU 24 n 23 GLU 24 O PHE 25 n 24 PHE 25 O THR 26 n 25 THR 26 O GLY 27 n 26 GLY 27 O LEU 28 n 27 LEU 28 O GLY 29 n 28 GLY 29 O ILE 30 n 29 ILE 30 O HIS 31 n 30 HIS 31 O ASP 32 n 31 ASP 32 O ARG 33 n 32 ARG 33 O VAL 34 n 33 VAL 34 O CYS 35 n 34 CYS 35 O VAL 36 n 35 VAL 36 O ILE 37 n 36 ILE 37 O PRO 38 n 37 PRO 38 O THR 39 n 38 THR 39 O HIS 40 n 39 HIS 40 O ALA 41 n 40 ALA 41 O GLN 42 n 41 GLN 42 O PRO 43 n 42 PRO 43 O GLY 44 n 43 GLY 44 O ASP 45 n 44 ASP 45 O ASP 46 n 45 ASP 46 O VAL 47 n 46 VAL 47 O LEU 48 n 47 LEU 48 O VAL 49 n 48 VAL 49 O ASN 50 n 49 ASN 50 O GLY 51 n 50 GLY 51 O GLN 52 n 51 GLN 52 O LYS 53 n 52 LYS 53 O ILE 54 n 53 ILE 54 O ARG 55 n 54 ARG 55 O VAL 56 n 55 VAL 56 O LYS 57 n 56 LYS 57 O ASP 58 n 57 ASP 58 O LYS 59 n 58 LYS 59 O TYR 60 n 59 TYR 60 O LYS 61 n 60 LYS 61 O LEU 62 n 61 LEU 62 O VAL 63 n 62 VAL 63 O ASP 64 n 63 ASP 64 O PRO 65 n 64 PRO 65 O GLU 66 n 65 GLU 66 O ASN 67 n 66 ASN 67 O ILE 68 n 67 ILE 68 O ASN 69 n 68 ASN 69 O LEU 70 n 69 LEU 70 O GLU 71 n 70 GLU 71 O LEU 72 n 71 LEU 72 O THR 73 n 72 THR 73 O VAL 74 n 73 VAL 74 O LEU 75 n 74 LEU 75 O THR 76 n 75 THR 76 O LEU 77 n 76 LEU 77 O ASP 78 n 77 ASP 78 O ARG 79 n 78 ARG 79 O ASN 80 n 79 ASN 80 O GLU 81 n 80 GLU 81 O LYS 82 n 81 LYS 82 O PHE 83 n 82 PHE 83 O ARG 84 n 83 ARG 84 O ASP 85 n 84 ASP 85 O ILE 86 n 85 ILE 86 O ARG 87 n 86 ARG 87 O GLY 88 n 87 GLY 88 O PHE 89 n 88 PHE 89 O ILE 90 n 89 ILE 90 O SER 91 n 90 SER 91 O GLU 92 n 91 GLU 92 O ASP 93 n 92 ASP 93 O LEU 94 n 93 LEU 94 O GLU 95 n 94 GLU 95 O GLY 96 n 95 GLY 96 O VAL 97 n 96 VAL 97 O ASP 98 n 97 ASP 98 O ALA 99 n 98 ALA 99 O THR 100 n 99 THR 100 O LEU 101 n 100 LEU 101 O VAL 102 n 101 VAL 102 O VAL 103 n 102 VAL 103 O HIS 104 n 103 HIS 104 O SER 105 n 104 SER 105 O ASN 106 n 105 ASN 106 O ASN 107 n 106 ASN 107 O PHE 108 n 107 PHE 108 O THR 109 n 108 THR 109 O ASN 110 n 109 ASN 110 O THR 111 n 110 THR 111 O ILE 112 n 111 ILE 112 O LEU 113 n 112 LEU 113 O GLU 114 n 113 GLU 114 O VAL 115 n 114 VAL 115 O GLY 116 n 115 GLY 116 O PRO 117 n 116 PRO 117 O VAL 118 n 117 VAL 118 O THR 119 n 118 THR 119 O MET 120 n 119 MET 120 O ALA 121 n 120 ALA 121 O GLY 122 n 121 GLY 122 O LEU 123 n 122 LEU 123 O ILE 124 n 123 ILE 124 O ASN 125 n 124 ASN 125 O LEU 126 n 125 LEU 126 O SER 127 n 126 SER 127 O SER 128 n 127 SER 128 O THR 129 n 128 THR 129 O PRO 130 n 129 PRO 130 O THR 131 n 130 THR 131 O ASN 132 n 131 ASN 132 O ARG 133 n 132 ARG 133 O MET 134 n 133 MET 134 O ILE 135 n 134 ILE 135 O ARG 136 n 135 ARG 136 O TYR 137 n 136 TYR 137 O ASP 138 n 137 ASP 138 O TYR 139 n 138 TYR 139 O ALA 140 n 139 ALA 140 O THR 141 n 140 THR 141 O LYS 142 n 141 LYS 142 O THR 143 n 142 THR 143 O GLY 144 n 143 GLY 144 O GLN 145 n 144 GLN 145 O CYS 146 n 145 CYS 146 O GLY 147 n 146 GLY 147 O GLY 148 n 147 GLY 148 O VAL 149 n 148 VAL 149 O LEU 150 n 149 LEU 150 O CYS 151 n 150 CYS 151 O ALA 152 n 151 ALA 152 O THR 153 n 152 THR 153 O GLY 154 n 153 GLY 154 O LYS 155 n 154 LYS 155 O ILE 156 n 155 ILE 156 O PHE 157 n 156 PHE 157 O GLY 158 n 157 GLY 158 O ILE 159 n 158 ILE 159 O HIS 160 n 159 HIS 160 O VAL 161 n 160 VAL 161 O GLY 162 n 161 GLY 162 O GLY 163 n 162 GLY 163 O ASN 164 n 163 ASN 164 O GLY 165 n 164 GLY 165 O ARG 166 n 165 ARG 166 O GLN 167 n 166 GLN 167 O GLY 168 n 167 GLY 168 O PHE 169 n 168 PHE 169 O SER 170 n 169 SER 170 O ALA 171 n 170 ALA 171 O GLN 172 n 171 GLN 172 O LEU 173 n 172 LEU 173 O LYS 174 n 173 LYS 174 O LYS 175 n 174 LYS 175 O GLN 176 n 175 GLN 176 O TYR 177 n 176 TYR 177 O PHE 178 n 177 PHE 178 O VAL 179 n 178 VAL 179 O GLU 180 n 179 GLU 180 O LYS 181 n 180 LYS 181 O GLN 3 n 1 GLN 3 P VAL 4 n 2 VAL 4 P GLN 5 n 3 GLN 5 P LEU 6 n 4 LEU 6 P LEU 7 n 5 LEU 7 P GLN 8 n 6 GLN 8 P SER 9 n 7 SER 9 P GLY 10 n 8 GLY 10 P GLY 11 n 9 GLY 11 P GLY 12 n 10 GLY 12 P VAL 13 n 11 VAL 13 P VAL 14 n 12 VAL 14 P GLN 15 n 13 GLN 15 P PRO 16 n 14 PRO 16 P GLY 17 n 15 GLY 17 P ARG 18 n 16 ARG 18 P SER 19 n 17 SER 19 P LEU 20 n 18 LEU 20 P ARG 21 n 19 ARG 21 P LEU 22 n 20 LEU 22 P SER 23 n 21 SER 23 P CYS 24 n 22 CYS 24 P ALA 25 n 23 ALA 25 P ALA 26 n 24 ALA 26 P SER 27 n 25 SER 27 P GLY 28 n 26 GLY 28 P PHE 29 n 27 PHE 29 P THR 30 n 28 THR 30 P PHE 31 n 29 PHE 31 P SER 32 n 30 SER 32 P SER 33 n 31 SER 33 P TYR 34 n 32 TYR 34 P ALA 35 n 33 ALA 35 P MET 36 n 34 MET 36 P HIS 37 n 35 HIS 37 P TRP 38 n 36 TRP 38 P VAL 39 n 37 VAL 39 P ARG 40 n 38 ARG 40 P GLN 41 n 39 GLN 41 P ALA 42 n 40 ALA 42 P PRO 43 n 41 PRO 43 P GLY 44 n 42 GLY 44 P LYS 45 n 43 LYS 45 P GLY 46 n 44 GLY 46 P LEU 47 n 45 LEU 47 P GLU 48 n 46 GLU 48 P TRP 49 n 47 TRP 49 P VAL 50 n 48 VAL 50 P ALA 51 n 49 ALA 51 P VAL 52 n 50 VAL 52 P ILE 53 n 51 ILE 53 P SER 54 n 52 SER 54 P TYR 55 n 53 TYR 55 P ASP 56 n 54 ASP 56 P GLY 57 n 55 GLY 57 P SER 58 n 56 SER 58 P ASN 59 n 57 ASN 59 P LYS 60 n 58 LYS 60 P TYR 61 n 59 TYR 61 P TYR 62 n 60 TYR 62 P ALA 63 n 61 ALA 63 P ASP 64 n 62 ASP 64 P SER 65 n 63 SER 65 P VAL 66 n 64 VAL 66 P LYS 67 n 65 LYS 67 P GLY 68 n 66 GLY 68 P ARG 69 n 67 ARG 69 P PHE 70 n 68 PHE 70 P THR 71 n 69 THR 71 P ILE 72 n 70 ILE 72 P SER 73 n 71 SER 73 P ARG 74 n 72 ARG 74 P ASP 75 n 73 ASP 75 P ASN 76 n 74 ASN 76 P SER 77 n 75 SER 77 P LYS 78 n 76 LYS 78 P ASN 79 n 77 ASN 79 P THR 80 n 78 THR 80 P LEU 81 n 79 LEU 81 P TYR 82 n 80 TYR 82 P LEU 83 n 81 LEU 83 P GLN 84 n 82 GLN 84 P MET 85 n 83 MET 85 P ASN 86 n 84 ASN 86 P SER 87 n 85 SER 87 P LEU 88 n 86 LEU 88 P ARG 89 n 87 ARG 89 P ALA 90 n 88 ALA 90 P GLU 91 n 89 GLU 91 P ASP 92 n 90 ASP 92 P THR 93 n 91 THR 93 P ALA 94 n 92 ALA 94 P VAL 95 n 93 VAL 95 P TYR 96 n 94 TYR 96 P TYR 97 n 95 TYR 97 P CYS 98 n 96 CYS 98 P ALA 99 n 97 ALA 99 P ARG 100 n 98 ARG 100 P VAL 101 n 99 VAL 101 P GLY 102 n 100 GLY 102 P LYS 103 n 101 LYS 103 P GLY 104 n 102 GLY 104 P GLY 105 n 103 GLY 105 P TYR 106 n 104 TYR 106 P ASP 107 n 105 ASP 107 P PHE 108 n 106 PHE 108 P TRP 109 n 107 TRP 109 P SER 110 n 108 SER 110 P GLY 111 n 109 GLY 111 P SER 112 n 110 SER 112 P GLY 113 n 111 GLY 113 P TYR 114 n 112 TYR 114 P MET 115 n 113 MET 115 P ASP 116 n 114 ASP 116 P VAL 117 n 115 VAL 117 P TRP 118 n 116 TRP 118 P GLY 119 n 117 GLY 119 P LYS 120 n 118 LYS 120 P GLY 121 n 119 GLY 121 P THR 122 n 120 THR 122 P THR 123 n 121 THR 123 P VAL 124 n 122 VAL 124 P THR 125 n 123 THR 125 P VAL 126 n 124 VAL 126 P SER 127 n 125 SER 127 P SER 128 n 126 SER 128 P GLY 129 n 127 GLY 129 P SER 1 n 1 SER 1 Q TYR 2 n 2 TYR 2 Q VAL 3 n 3 VAL 3 Q LEU 4 n 4 LEU 4 Q THR 5 n 5 THR 5 Q GLN 6 n 6 GLN 6 Q PRO 7 n 7 PRO 7 Q PRO 8 n 8 PRO 8 Q SER 9 n 9 SER 9 Q VAL 10 n 10 VAL 10 Q SER 11 n 11 SER 11 Q VAL 12 n 12 VAL 12 Q SER 13 n 13 SER 13 Q PRO 14 n 14 PRO 14 Q GLY 15 n 15 GLY 15 Q GLN 16 n 16 GLN 16 Q THR 17 n 17 THR 17 Q ALA 18 n 18 ALA 18 Q SER 19 n 19 SER 19 Q ILE 20 n 20 ILE 20 Q THR 21 n 21 THR 21 Q CYS 22 n 22 CYS 22 Q SER 23 n 23 SER 23 Q GLY 24 n 24 GLY 24 Q ASP 25 n 25 ASP 25 Q LYS 26 n 26 LYS 26 Q LEU 27 n 27 LEU 27 Q GLY 28 n 28 GLY 28 Q ASP 29 n 29 ASP 29 Q LYS 30 n 30 LYS 30 Q TYR 31 n 31 TYR 31 Q ALA 32 n 32 ALA 32 Q CYS 33 n 33 CYS 33 Q TRP 34 n 34 TRP 34 Q TYR 35 n 35 TYR 35 Q GLN 36 n 36 GLN 36 Q GLN 37 n 37 GLN 37 Q LYS 38 n 38 LYS 38 Q PRO 39 n 39 PRO 39 Q GLY 40 n 40 GLY 40 Q GLN 41 n 41 GLN 41 Q SER 42 n 42 SER 42 Q PRO 43 n 43 PRO 43 Q VAL 44 n 44 VAL 44 Q LEU 45 n 45 LEU 45 Q VAL 46 n 46 VAL 46 Q ILE 47 n 47 ILE 47 Q TYR 48 n 48 TYR 48 Q GLN 49 n 49 GLN 49 Q ASP 50 n 50 ASP 50 Q SER 51 n 51 SER 51 Q LYS 52 n 52 LYS 52 Q ARG 53 n 53 ARG 53 Q PRO 54 n 54 PRO 54 Q SER 55 n 55 SER 55 Q GLY 56 n 56 GLY 56 Q ILE 57 n 57 ILE 57 Q PRO 58 n 58 PRO 58 Q GLU 59 n 59 GLU 59 Q ARG 60 n 60 ARG 60 Q PHE 61 n 61 PHE 61 Q SER 62 n 62 SER 62 Q GLY 63 n 63 GLY 63 Q SER 64 n 64 SER 64 Q ASN 65 n 65 ASN 65 Q SER 66 n 66 SER 66 Q GLY 67 n 67 GLY 67 Q ASN 68 n 68 ASN 68 Q THR 69 n 69 THR 69 Q ALA 70 n 70 ALA 70 Q THR 71 n 71 THR 71 Q LEU 72 n 72 LEU 72 Q THR 73 n 73 THR 73 Q ILE 74 n 74 ILE 74 Q SER 75 n 75 SER 75 Q GLY 76 n 76 GLY 76 Q THR 77 n 77 THR 77 Q GLN 78 n 78 GLN 78 Q ALA 79 n 79 ALA 79 Q MET 80 n 80 MET 80 Q ASP 81 n 81 ASP 81 Q GLU 82 n 82 GLU 82 Q ALA 83 n 83 ALA 83 Q ASP 84 n 84 ASP 84 Q TYR 85 n 85 TYR 85 Q TYR 86 n 86 TYR 86 Q CYS 87 n 87 CYS 87 Q GLN 88 n 88 GLN 88 Q ALA 89 n 89 ALA 89 Q TRP 90 n 90 TRP 90 Q ASP 91 n 91 ASP 91 Q SER 92 n 92 SER 92 Q SER 93 n 93 SER 93 Q THR 94 n 94 THR 94 Q VAL 95 n 95 VAL 95 Q VAL 96 n 96 VAL 96 Q PHE 97 n 97 PHE 97 Q GLY 98 n 98 GLY 98 Q GLY 99 n 99 GLY 99 Q GLY 100 n 100 GLY 100 Q THR 101 n 101 THR 101 Q LYS 102 n 102 LYS 102 Q LEU 103 n 103 LEU 103 Q THR 104 n 104 THR 104 Q VAL 105 n 105 VAL 105 Q LEU 106 n 106 LEU 106 Q GLY 107 n 107 GLY 107 Q G 1 n 1 G 1 R G 2 n 2 G 2 R G 3 n 3 G 3 R A 4 n 4 A 4 R A 5 n 5 A 5 R A 6 n 6 A 6 R C 7 n 7 C 7 R A 8 n 8 A 8 R G 9 n 9 G 9 R C 10 n 10 C 10 R G 11 n 11 G 11 R G 12 n 12 G 12 R A 13 n 13 A 13 R U 14 n 14 U 14 R G 15 n 15 G 15 R G 16 n 16 G 16 R n 17 17 R n 18 18 R n 19 19 R n 20 20 R n 21 21 R n 22 22 R n 23 23 R n 24 24 R C 25 n 25 C 25 R C 26 n 26 C 26 R A 27 n 27 A 27 R U 28 n 28 U 28 R U 29 n 29 U 29 R C 30 n 30 C 30 R G 31 n 31 G 31 R A 32 n 32 A 32 R C 33 n 33 C 33 R C 34 n 34 C 34 R C 35 n 35 C 35 R A 36 n 36 A 36 R U 37 n 37 U 37 R U 38 n 38 U 38 R G 39 n 39 G 39 R G 40 n 40 G 40 R G 41 n 41 G 41 R U 42 n 42 U 42 R G 43 n 43 G 43 R U 44 n 44 U 44 R A 45 n 45 A 45 R G 46 n 46 G 46 R U 47 n 47 U 47 R A 48 n 48 A 48 R C 49 n 49 C 49 R U 50 n 50 U 50 R C 51 n 51 C 51 R U 52 n 52 U 52 R G 53 n 53 G 53 R G 54 n 54 G 54 R U 55 n 55 U 55 R A 56 n 56 A 56 R C 57 n 57 C 57 R U 58 n 58 U 58 R A 59 n 59 A 59 R U 60 n 60 U 60 R G 61 n 61 G 61 R U 62 n 62 U 62 R A 63 n 63 A 63 R C 64 n 64 C 64 R C 65 n 65 C 65 R U 66 n 66 U 66 R U 67 n 67 U 67 R U 68 n 68 U 68 R G 69 n 69 G 69 R U 70 n 70 U 70 R A 71 n 71 A 71 R C 72 n 72 C 72 R G 73 n 73 G 73 R C 74 n 74 C 74 R C 75 n 75 C 75 R U 76 n 76 U 76 R G 77 n 77 G 77 R U 78 n 78 U 78 R U 79 n 79 U 79 R U 80 n 80 U 80 R C 81 n 81 C 81 R C 82 n 82 C 82 R C 83 n 83 C 83 R author_and_software_defined_assembly 4 tetrameric not applicable electron microscopy 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 1.0 1_555 x,y,z identity operation 0.0 0.0 0.0 O N MET 16 A N MET 15 O O GLY 27 A O GLY 26 O N ILE 30 A N ILE 29 O O VAL 34 A O VAL 33 O N ILE 37 A N ILE 36 O O THR 73 A O THR 72 O O ILE 68 A O ILE 67 O N ASP 64 A N ASP 63 O O ILE 54 A O ILE 53 O N VAL 47 A N VAL 46 O O LEU 48 A O LEU 47 O N THR 19 A N THR 18 O N THR 119 A N THR 118 O O ARG 136 A O ARG 135 O N TYR 137 A N TYR 136 O O GLY 168 A O GLY 167 O O PHE 169 A O PHE 168 O N GLY 162 A N GLY 161 O O GLY 158 A O GLY 157 O N LEU 150 A N LEU 149 O O CYS 151 A O CYS 150 O N THR 100 A N THR 99 O N VAL 103 A N VAL 102 O O THR 111 A O THR 110 O N ILE 112 A N ILE 111 P O TYR 106 B O TYR 104 O N LEU 126 A N LEU 125 O O THR 129 A O THR 128 P N GLN 5 B N GLN 3 P O SER 27 B O SER 25 P N LEU 20 B N LEU 18 P O MET 85 B O MET 83 P O TYR 82 B O TYR 80 P N SER 73 B N SER 71 P N VAL 14 B N VAL 12 P O THR 125 B O THR 123 P O VAL 124 B O VAL 122 P N ALA 94 B N ALA 92 P O TYR 97 B O TYR 95 P N VAL 39 B N VAL 37 P N ARG 40 B N ARG 38 P O GLU 48 B O GLU 46 P N VAL 52 B N VAL 50 P O TYR 61 B O TYR 59 Q N THR 5 C N THR 5 Q O SER 23 C O SER 23 Q N ILE 20 C N ILE 20 Q O LEU 72 C O LEU 72 Q O THR 73 C O THR 73 Q N SER 62 C N SER 62 Q N VAL 10 C N VAL 10 Q O LYS 102 C O LYS 102 Q O THR 101 C O THR 101 Q N TYR 85 C N TYR 85 Q O ASP 84 C O ASP 84 Q N GLN 37 C N GLN 37 Q N GLN 36 C N GLN 36 Q O VAL 44 C O VAL 44 Q N VAL 10 C N VAL 10 Q O LYS 102 C O LYS 102 Q O THR 101 C O THR 101 Q N TYR 85 C N TYR 85 Q N ALA 89 C N ALA 89 Q O VAL 96 C O VAL 96 1 R OP2 G 16 D OP2 G 16 1 Y 1 R G 17 D G 17 1 Y 1 R U 18 D U 18 1 Y 1 R A 19 D A 19 1 Y 1 R U 20 D U 20 1 Y 1 R C 21 D C 21 1 Y 1 R C 22 D C 22 1 Y 1 R C 23 D C 23 1 Y 1 R A 24 D A 24 1 Y 1 O ASP 32 53.62 -110.38 1 O GLN 42 48.90 71.83 1 O LEU 94 -93.04 52.16 1 O ASN 106 57.52 -132.23 1 P VAL 50 -120.20 -62.40 1 P ALA 94 -167.10 -168.67 1 P ASP 116 -122.58 -50.69 1 Q GLN 49 55.52 -110.07 1 Q ALA 83 -163.04 -166.08 4.38 REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS) 0.003 4987 0.638 7106 12.033 1342 0.039 860 0.005 635 N HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation2 splitRNA 1 N N 2 N N 3 N N 4 N N O ASN 3 A ASN 2 HELX_P O ASN 14 A ASN 13 1 AA1 12 O PRO 38 A PRO 37 HELX_P O GLN 42 A GLN 41 5 AA2 5 O ILE 86 A ILE 85 HELX_P O ILE 90 A ILE 89 5 AA3 5 P ARG 89 B ARG 87 HELX_P P THR 93 B THR 91 5 AA4 5 Q LYS 26 C LYS 26 HELX_P Q LYS 30 C LYS 30 5 AA5 5 Q GLN 78 C GLN 78 HELX_P Q GLU 82 C GLU 82 5 AA6 5 hydrog WATSON-CRICK R G 1 D N1 G 1 1_555 R C 83 D N3 C 83 1_555 hydrog WATSON-CRICK R G 1 D N2 G 1 1_555 R C 83 D O2 C 83 1_555 hydrog WATSON-CRICK R G 1 D O6 G 1 1_555 R C 83 D N4 C 83 1_555 hydrog WATSON-CRICK R G 2 D N1 G 2 1_555 R C 82 D N3 C 82 1_555 hydrog WATSON-CRICK R G 2 D N2 G 2 1_555 R C 82 D O2 C 82 1_555 hydrog WATSON-CRICK R G 2 D O6 G 2 1_555 R C 82 D N4 C 82 1_555 hydrog WATSON-CRICK R G 3 D N1 G 3 1_555 R C 81 D N3 C 81 1_555 hydrog WATSON-CRICK R G 3 D N2 G 3 1_555 R C 81 D O2 C 81 1_555 hydrog WATSON-CRICK R G 3 D O6 G 3 1_555 R C 81 D N4 C 81 1_555 hydrog WATSON-CRICK R A 4 D N1 A 4 1_555 R U 80 D N3 U 80 1_555 hydrog WATSON-CRICK R A 4 D N6 A 4 1_555 R U 80 D O4 U 80 1_555 hydrog WATSON-CRICK R A 5 D N1 A 5 1_555 R U 79 D N3 U 79 1_555 hydrog WATSON-CRICK R A 5 D N6 A 5 1_555 R U 79 D O4 U 79 1_555 hydrog WATSON-CRICK R A 6 D N1 A 6 1_555 R U 78 D N3 U 78 1_555 hydrog WATSON-CRICK R A 6 D N6 A 6 1_555 R U 78 D O4 U 78 1_555 hydrog WATSON-CRICK R C 7 D N3 C 7 1_555 R G 77 D N1 G 77 1_555 hydrog WATSON-CRICK R C 7 D N4 C 7 1_555 R G 77 D O6 G 77 1_555 hydrog WATSON-CRICK R C 7 D O2 C 7 1_555 R G 77 D N2 G 77 1_555 hydrog TYPE_18_PAIR R C 7 D N3 C 7 1_555 R U 78 D N3 U 78 1_555 hydrog TYPE_18_PAIR R C 7 D N4 C 7 1_555 R U 78 D O4 U 78 1_555 hydrog A-G MISPAIR R A 8 D N1 A 8 1_555 R G 77 D N1 G 77 1_555 hydrog TYPE_28_PAIR R G 9 D N1 G 9 1_555 R U 76 D O2 U 76 1_555 hydrog TYPE_28_PAIR R G 9 D O6 G 9 1_555 R U 76 D N3 U 76 1_555 hydrog C-G PAIR R C 10 D O2 C 10 1_555 R G 31 D N1 G 31 1_555 hydrog C-A MISPAIR R C 10 D O2 C 10 1_555 R A 32 D N6 A 32 1_555 hydrog WATSON-CRICK R G 11 D N1 G 11 1_555 R C 30 D N3 C 30 1_555 hydrog WATSON-CRICK R G 11 D N2 G 11 1_555 R C 30 D O2 C 30 1_555 hydrog WATSON-CRICK R G 11 D O6 G 11 1_555 R C 30 D N4 C 30 1_555 hydrog TYPE_28_PAIR R G 12 D N1 G 12 1_555 R U 29 D O2 U 29 1_555 hydrog TYPE_28_PAIR R G 12 D O6 G 12 1_555 R U 29 D N3 U 29 1_555 hydrog WATSON-CRICK R A 13 D N1 A 13 1_555 R U 28 D N3 U 28 1_555 hydrog WATSON-CRICK R A 13 D N6 A 13 1_555 R U 28 D O4 U 28 1_555 hydrog WATSON-CRICK R U 14 D N3 U 14 1_555 R A 27 D N1 A 27 1_555 hydrog WATSON-CRICK R U 14 D O4 U 14 1_555 R A 27 D N6 A 27 1_555 hydrog WATSON-CRICK R G 15 D N1 G 15 1_555 R C 26 D N3 C 26 1_555 hydrog WATSON-CRICK R G 15 D N2 G 15 1_555 R C 26 D O2 C 26 1_555 hydrog WATSON-CRICK R G 15 D O6 G 15 1_555 R C 26 D N4 C 26 1_555 hydrog WATSON-CRICK R G 16 D N1 G 16 1_555 R C 25 D N3 C 25 1_555 hydrog WATSON-CRICK R G 16 D N2 G 16 1_555 R C 25 D O2 C 25 1_555 hydrog WATSON-CRICK R G 16 D O6 G 16 1_555 R C 25 D N4 C 25 1_555 hydrog WATSON-CRICK R A 32 D N1 A 32 1_555 R U 42 D N3 U 42 1_555 hydrog WATSON-CRICK R A 32 D N6 A 32 1_555 R U 42 D O4 U 42 1_555 hydrog WATSON-CRICK R C 33 D N3 C 33 1_555 R G 41 D N1 G 41 1_555 hydrog WATSON-CRICK R C 33 D N4 C 33 1_555 R G 41 D O6 G 41 1_555 hydrog WATSON-CRICK R C 33 D O2 C 33 1_555 R G 41 D N2 G 41 1_555 hydrog WATSON-CRICK R C 34 D N3 C 34 1_555 R G 40 D N1 G 40 1_555 hydrog WATSON-CRICK R C 34 D N4 C 34 1_555 R G 40 D O6 G 40 1_555 hydrog WATSON-CRICK R C 34 D O2 C 34 1_555 R G 40 D N2 G 40 1_555 hydrog WATSON-CRICK R C 35 D N3 C 35 1_555 R G 39 D N1 G 39 1_555 hydrog WATSON-CRICK R C 35 D N4 C 35 1_555 R G 39 D O6 G 39 1_555 hydrog WATSON-CRICK R C 35 D O2 C 35 1_555 R G 39 D N2 G 39 1_555 hydrog G-C PAIR R G 43 D N2 G 43 1_555 R C 75 D N3 C 75 1_555 hydrog A-G MISPAIR R A 45 D N1 A 45 1_555 R G 73 D N1 G 73 1_555 hydrog WATSON-CRICK R G 46 D N1 G 46 1_555 R C 72 D N3 C 72 1_555 hydrog WATSON-CRICK R G 46 D N2 G 46 1_555 R C 72 D O2 C 72 1_555 hydrog WATSON-CRICK R G 46 D O6 G 46 1_555 R C 72 D N4 C 72 1_555 hydrog WATSON-CRICK R U 47 D N3 U 47 1_555 R A 71 D N1 A 71 1_555 hydrog WATSON-CRICK R U 47 D O4 U 47 1_555 R A 71 D N6 A 71 1_555 hydrog WATSON-CRICK R A 48 D N1 A 48 1_555 R U 70 D N3 U 70 1_555 hydrog WATSON-CRICK R A 48 D N6 A 48 1_555 R U 70 D O4 U 70 1_555 hydrog WATSON-CRICK R C 49 D N3 C 49 1_555 R G 69 D N1 G 69 1_555 hydrog WATSON-CRICK R C 49 D N4 C 49 1_555 R G 69 D O6 G 69 1_555 hydrog WATSON-CRICK R C 49 D O2 C 49 1_555 R G 69 D N2 G 69 1_555 hydrog U-G MISPAIR R U 50 D O2 U 50 1_555 R G 69 D N2 G 69 1_555 hydrog C-U MISPAIR R C 51 D N4 C 51 1_555 R U 68 D O2 U 68 1_555 hydrog WATSON-CRICK R G 53 D N1 G 53 1_555 R C 65 D N3 C 65 1_555 hydrog WATSON-CRICK R G 53 D N2 G 53 1_555 R C 65 D O2 C 65 1_555 hydrog WATSON-CRICK R G 53 D O6 G 53 1_555 R C 65 D N4 C 65 1_555 hydrog WATSON-CRICK R G 54 D N1 G 54 1_555 R C 64 D N3 C 64 1_555 hydrog WATSON-CRICK R G 54 D N2 G 54 1_555 R C 64 D O2 C 64 1_555 hydrog WATSON-CRICK R G 54 D O6 G 54 1_555 R C 64 D N4 C 64 1_555 hydrog WATSON-CRICK R U 55 D N3 U 55 1_555 R A 63 D N1 A 63 1_555 hydrog WATSON-CRICK R U 55 D O4 U 55 1_555 R A 63 D N6 A 63 1_555 hydrog WATSON-CRICK R A 56 D N1 A 56 1_555 R U 62 D N3 U 62 1_555 hydrog WATSON-CRICK R A 56 D N6 A 56 1_555 R U 62 D O4 U 62 1_555 hydrog WATSON-CRICK R C 57 D N3 C 57 1_555 R G 61 D N1 G 61 1_555 hydrog WATSON-CRICK R C 57 D N4 C 57 1_555 R G 61 D O6 G 61 1_555 hydrog WATSON-CRICK R C 57 D O2 C 57 1_555 R G 61 D N2 G 61 1_555 RNA BINDING PROTEIN/IMMUNE SYSTEM/RNA cloverleafRNA, 3c, complex, RNA BINDING PROTEIN/IMMUNE SYSTEM/RNA, RNA BINDING PROTEIN-IMMUNE SYSTEM-RNA complex POLG_HRV14 UNP 1 1539 P03303 PNTEFALSLLRKNIMTITTSKGEFTGLGIHDRVCVIPTHAQPGDDVLVNGQKIRVKDKYKLVDPENINLELTVLTLDRNE KFRDIRGFISEDLEGVDATLVVHSNNFTNTILEVGPVTMAGLINLSSTPTNRMIRYDYATKTGQCGGVLCATGKIFGIHV GGNGRQGFSAQLKKQYFVEK 9VMD PDB 2 1 9VMD 9VMD PDB 3 1 9VMD L05355.1 GB 4 4 291485 AAACAGCGGAUGGGUAUCCCACCAUUCGACCCAUUGGGUGUAGUACUCUGGUACUAUGUACCUUUGUACGCCUGUUUC 1539 1718 9VMD 2 181 P03303 O 1 1 180 3 129 9VMD 3 129 9VMD P 2 1 127 1 107 9VMD 1 107 9VMD Q 3 1 107 4 81 9VMD 4 81 291485 R 4 4 81 4 expression tag G 1 9VMD R 291485 GB 1 4 expression tag G 2 9VMD R 291485 GB 2 4 expression tag G 3 9VMD R 291485 GB 3 4 expression tag C 82 9VMD R 291485 GB 82 4 expression tag C 83 9VMD R 291485 GB 83 7 8 2 4 6 4 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel O ILE 15 A ILE 14 O THR 20 A THR 19 O GLY 23 A GLY 22 O HIS 31 A HIS 30 O VAL 34 A VAL 33 O ILE 37 A ILE 36 O ILE 68 A ILE 67 O LEU 77 A LEU 76 O GLN 52 A GLN 51 O ASP 64 A ASP 63 O ASP 46 A ASP 45 O VAL 49 A VAL 48 O ILE 15 A ILE 14 O THR 20 A THR 19 O THR 119 A THR 118 O MET 120 A MET 119 O MET 134 A MET 133 O ASP 138 A ASP 137 O GLN 167 A GLN 166 O GLN 172 A GLN 171 O LYS 155 A LYS 154 O GLY 163 A GLY 162 O VAL 149 A VAL 148 O ALA 152 A ALA 151 O THR 100 A THR 99 O SER 105 A SER 104 O PHE 108 A PHE 107 O LEU 113 A LEU 112 P GLY 105 B GLY 103 P ASP 107 B ASP 105 O LEU 123 A LEU 122 O LEU 126 A LEU 125 O THR 129 A THR 128 O ASN 132 A ASN 131 P GLN 5 B GLN 3 P GLY 10 B GLY 8 P LEU 20 B LEU 18 P SER 27 B SER 25 P THR 80 B THR 78 P MET 85 B MET 83 P PHE 70 B PHE 68 P ASP 75 B ASP 73 P GLY 12 B GLY 10 P VAL 14 B VAL 12 P THR 122 B THR 120 P VAL 126 B VAL 124 P ALA 94 B ALA 92 P ALA 99 B ALA 97 P MET 36 B MET 34 P GLN 41 B GLN 39 P LEU 47 B LEU 45 P ILE 53 B ILE 51 P LYS 60 B LYS 58 P TYR 62 B TYR 60 Q LEU 4 C LEU 4 Q THR 5 C THR 5 Q ALA 18 C ALA 18 Q GLY 24 C GLY 24 Q THR 69 C THR 69 Q ILE 74 C ILE 74 Q PHE 61 C PHE 61 Q SER 66 C SER 66 Q SER 9 C SER 9 Q SER 11 C SER 11 Q THR 101 C THR 101 Q THR 104 C THR 104 Q ASP 84 C ASP 84 Q ASP 91 C ASP 91 Q TYR 31 C TYR 31 Q GLN 37 C GLN 37 Q VAL 44 C VAL 44 Q ILE 47 C ILE 47 Q SER 9 C SER 9 Q SER 11 C SER 11 Q THR 101 C THR 101 Q THR 104 C THR 104 Q ASP 84 C ASP 84 Q ASP 91 C ASP 91 Q THR 94 C THR 94 Q PHE 97 C PHE 97 1 P 1