0.007637 0.000000 0.000877 -0.000000 0.018048 0.000000 0.000000 -0.000000 0.015299 0.00000 0.00000 0.00000 Park, S.Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 96.55 90.00 130.935 55.407 65.793 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N P N 417 N O N 418 N O N 419 N O N 420 N O N 421 N N N 422 S C N 423 N C N 424 N O N 425 N C N 426 N C N 427 N C N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N N N 439 S C N 440 N C N 441 N O N 442 N C N 443 N O N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N N N 453 S C N 454 N C N 455 N O N 456 R C N 457 N O N 458 N C N 459 N O N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N N N 470 S C N 471 N C N 472 N O N 473 N C Y 474 N C Y 475 N C Y 476 N C Y 477 N C Y 478 N C Y 479 N C N 480 N O N 481 N O N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N N N 494 S C N 495 N C N 496 N O N 497 N C N 498 N C N 499 N C N 500 N O N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N doub N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N doub N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N doub N 466 N sing N 467 N sing N 468 N sing N 469 N sing Y 470 N doub Y 471 N sing Y 472 N sing N 473 N sing Y 474 N doub N 475 N sing Y 476 N doub N 477 N sing Y 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N doub N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing UK Nucleic Acids Res. NARHAD 0389 1362-4962 53 10.1093/nar/gkaf1032 41123208 DNA-bound structure of Clostridioides difficile heme-sensing HsmR gives insight on how the unique dimer mode governs DNA specificity in MarR transcriptional regulators. 2025 0000-0001-9110-7249 10.2210/pdb9vg2/pdb pdb_00009vg2 100 1 N PIXEL 2024-12-27 DECTRIS PILATUS3 6M SINGLE WAVELENGTH M x-ray 1 0.979 1.0 7A (6B, 6C1) PAL/PLS 0.979 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 19292.203 MarR-family transcriptional regulator 2 man polymer 6740.388 DNA (5'-D(*AP*TP*TP*AP*GP*TP*TP*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*CP*CP*AP*TP*T)-3') 1 syn polymer 6758.416 DNA (5'-D(*AP*TP*TP*AP*GP*TP*TP*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*CP*CP*AP*TP*T)-3') 1 syn polymer 94.971 PHOSPHATE ION 2 syn non-polymer 18.015 water 192 nat water no no MGSSHHHHHHSSGLVPRGSHMILLKSNYDCFRIAMLLKELYSKTMYTVEENFKENGLTAQQIIVIKLVAHNQELTISQLC DEMSLAKGTVSGIISRLEQIGYIEKFKKSNDKRNTYVKFTTTGFEFATNFKIKMQESFDDIFKNCDENELSDLVKNLRNI LAKVKER MGSSHHHHHHSSGLVPRGSHMILLKSNYDCFRIAMLLKELYSKTMYTVEENFKENGLTAQQIIVIKLVAHNQELTISQLC DEMSLAKGTVSGIISRLEQIGYIEKFKKSNDKRNTYVKFTTTGFEFATNFKIKMQESFDDIFKNCDENELSDLVKNLRNI LAKVKER A,B polypeptide(L) no no (DA)(DT)(DT)(DA)(DG)(DT)(DT)(DT)(DG)(DT)(DA)(DT)(DG)(DC)(DA)(DA)(DA)(DC)(DC)(DA) (DT)(DT) ATTAGTTTGTATGCAAACCATT C polydeoxyribonucleotide no no (DA)(DA)(DT)(DG)(DG)(DT)(DT)(DT)(DG)(DC)(DA)(DT)(DA)(DC)(DA)(DA)(DA)(DC)(DT)(DA) (DA)(DT) AATGGTTTGCATACAAACTAAT D polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 167 CDR20291_0782 1496 Clostridioides difficile 562 Escherichia coli Biological sequence 1 2.28 45.96 VAPOR DIFFUSION, HANGING DROP 0.20 M Ammonium phosphate monobasic 295 7.295 1 20 C 1 D 22 4.919 C_DA1:DT22_D 1 -14.133 -0.189 0.030 -0.194 5.603 1 20 C 2 D 21 5.187 C_DT2:DA21_D 2 -11.287 -0.191 0.193 -0.070 1.346 1 20 C 3 D 20 1.464 C_DT3:DA20_D 3 -20.096 0.015 0.066 -0.392 2.789 1 20 C 4 D 19 -1.795 C_DA4:DT19_D 4 -7.318 0.033 -0.097 -0.217 0.337 1 19 C 5 D 18 -0.189 C_DG5:DC18_D 5 -12.984 -0.165 0.011 -0.180 -4.827 1 20 C 6 D 17 1.404 C_DT6:DA17_D 6 -17.426 -0.098 0.153 -0.236 -10.509 1 20 C 7 D 16 -0.284 C_DT7:DA16_D 7 -19.620 0.053 0.094 -0.271 -16.198 1 20 C 8 D 15 2.510 C_DT8:DA15_D 8 -12.893 -0.302 0.088 -0.160 -6.306 1 19 C 9 D 14 -0.595 C_DG9:DC14_D 9 -1.087 -0.252 -0.142 -0.174 6.885 1 20 C 10 D 13 2.002 C_DT10:DA13_D 10 -4.018 -0.003 -0.012 -0.302 1.228 1 20 C 11 D 12 1.239 C_DA11:DT12_D 11 -6.798 0.111 -0.004 -0.255 5.779 1 20 C 12 D 11 2.630 C_DT12:DA11_D 12 -7.698 -0.005 0.048 -0.278 -11.483 1 19 C 13 D 10 -0.366 C_DG13:DC10_D 13 -9.999 -0.255 0.029 -0.302 -0.453 1 19 C 14 D 9 -2.076 C_DC14:DG9_D 14 -0.657 0.260 -0.222 -0.214 16.680 1 20 C 15 D 8 4.746 C_DA15:DT8_D 15 -7.953 0.257 -0.082 -0.253 11.115 1 20 C 16 D 7 0.802 C_DA16:DT7_D 16 -19.442 -0.063 0.159 -0.323 9.470 1 20 C 17 D 6 2.095 C_DA17:DT6_D 17 -18.750 -0.086 0.421 -0.257 -0.179 1 19 C 18 D 5 0.904 C_DC18:DG5_D 18 -15.204 0.311 0.164 -0.193 -5.279 1 19 C 19 D 4 2.086 C_DC19:DG4_D 19 -7.086 0.071 0.184 -0.189 -6.130 1 20 C 20 D 3 2.657 C_DA20:DT3_D 20 -10.155 -0.093 -0.164 -0.095 -4.345 1 20 C 21 D 2 2.590 C_DT21:DA2_D 21 -11.655 -0.546 0.263 -0.056 -2.272 1 20 C 22 D 1 1.938 C_DT22:DA1_D 22 -13.521 0.138 -0.143 -0.216 3.264 32.523 C C 1 2 -2.924 D D 22 21 3.255 -1.637 0.526 -0.622 CC_DA1DT2:DA21DT22_DD 1 -1.044 1.866 32.467 -0.825 -1.121 3.271 36.132 C C 2 3 -0.588 D D 21 20 3.272 -0.365 -0.027 -0.094 CC_DT2DT3:DA20DA21_DD 2 1.037 -1.671 36.116 -0.100 0.190 3.260 41.326 C C 3 4 15.962 D D 20 19 3.312 11.111 -0.046 0.349 CC_DT3DA4:DT19DA20_DD 3 5.077 -7.294 39.555 -0.733 0.626 3.077 29.670 C C 4 5 13.060 D D 19 18 3.324 6.629 0.526 -0.583 CC_DA4DG5:DC18DT19_DD 4 -1.874 3.692 28.877 -2.523 -1.419 3.303 35.991 C C 5 6 0.993 D D 18 17 3.316 0.614 -0.376 -0.816 CC_DG5DT6:DA17DC18_DD 5 -0.044 0.071 35.986 -1.409 0.602 3.272 38.330 C C 6 7 1.670 D D 17 16 3.266 1.096 -0.433 -0.090 CC_DT6DT7:DA16DA17_DD 6 -0.947 1.443 38.303 -0.275 0.541 3.267 40.666 C C 7 8 -2.266 D D 16 15 3.289 -1.574 0.247 0.548 CC_DT7DT8:DA15DA16_DD 7 0.101 -0.145 40.636 0.963 -0.344 3.249 34.547 C C 8 9 10.472 D D 15 14 3.076 6.187 0.495 1.268 CC_DT8DG9:DC14DA15_DD 8 -0.010 0.018 34.005 1.203 -0.834 2.980 28.245 C C 9 10 5.333 D D 14 13 2.982 2.598 -0.219 0.043 CC_DG9DT10:DA13DC14_DD 9 -1.216 2.495 28.102 -0.464 0.190 3.395 42.028 C C 10 11 0.807 D D 13 12 3.394 0.579 0.140 -0.088 CC_DT10DA11:DT12DA13_DD 10 1.525 -2.127 41.998 -0.185 -0.030 3.234 30.420 C C 11 12 -8.663 D D 12 11 3.180 -4.529 0.059 -0.614 CC_DA11DT12:DA11DT12_DD 11 -0.308 0.589 30.087 -0.277 -0.172 3.519 42.694 C C 12 13 3.699 D D 11 10 3.550 2.691 -0.145 -0.453 CC_DT12DG13:DC10DA11_DD 12 -1.688 2.321 42.581 -0.914 0.016 3.052 34.399 C C 13 14 0.743 D D 10 9 3.028 0.439 0.516 0.190 CC_DG13DC14:DG9DC10_DD 13 1.761 -2.979 34.353 0.257 -0.616 3.102 28.905 C C 14 15 8.766 D D 9 8 2.913 4.359 -0.283 1.557 CC_DC14DA15:DT8DG9_DD 14 0.814 -1.638 28.570 2.224 0.735 3.303 41.061 C C 15 16 -1.941 D D 8 7 3.328 -1.361 -0.404 0.995 CC_DA15DA16:DT7DT8_DD 15 -0.955 1.362 41.029 1.568 0.471 3.117 38.286 C C 16 17 3.124 D D 7 6 3.131 2.048 0.585 -0.275 CC_DA16DA17:DT6DT7_DD 16 0.280 -0.427 38.232 -0.665 -0.858 3.513 36.537 C C 17 18 -1.561 D D 6 5 3.472 -0.978 0.541 -0.828 CC_DA17DC18:DG5DT6_DD 17 1.716 -2.738 36.486 -1.176 -0.610 3.188 31.391 C C 18 19 11.073 D D 5 4 3.380 5.955 -0.306 -0.642 CC_DC18DC19:DG4DG5_DD 18 1.317 -2.450 30.807 -2.320 0.816 3.324 38.708 C C 19 20 10.972 D D 4 3 3.317 7.232 -0.059 0.353 CC_DC19DA20:DT3DG4_DD 19 0.910 -1.380 38.041 -0.377 0.203 3.112 29.053 C C 20 21 4.754 D D 3 2 3.199 2.378 0.012 -0.714 CC_DA20DT21:DA2DT3_DD 20 -3.155 6.307 28.789 -1.930 -0.695 3.112 38.226 C C 21 22 1.133 D D 2 1 3.131 0.741 -0.102 -0.016 CC_DT21DT22:DA1DA2_DD 21 3.138 -4.797 38.094 -0.113 0.533 repository Initial release 1 0 2026-05-13 Korea, Republic Of National Research Foundation (NRF, Korea) psy@ssu.ac.kr 0000-0001-9110-7249 SangYoun Park principal investigator/group leader Same protein and DNA, different space group crystal N PDBJ Y PDBJ 2025-06-12 REL REL PO4 PHOSPHATE ION HOH water 1496 Clostridioides difficile sample 1 22 1496 Clostridioides difficile sample 1 22 N N 8ZDE PDB experimental model PO4 200 4 PO4 PO4 200 B PO4 200 4 PO4 PO4 200 D HOH 32 5 HOH HOH 201 A HOH 102 5 HOH HOH 202 A HOH 159 5 HOH HOH 203 A HOH 11 5 HOH HOH 204 A HOH 76 5 HOH HOH 205 A HOH 20 5 HOH HOH 206 A HOH 179 5 HOH HOH 207 A HOH 33 5 HOH HOH 208 A HOH 154 5 HOH HOH 209 A HOH 10 5 HOH HOH 210 A HOH 19 5 HOH HOH 211 A HOH 148 5 HOH HOH 212 A HOH 74 5 HOH HOH 213 A HOH 13 5 HOH HOH 214 A HOH 183 5 HOH HOH 215 A HOH 59 5 HOH HOH 216 A HOH 64 5 HOH HOH 217 A HOH 1 5 HOH HOH 218 A HOH 29 5 HOH HOH 219 A HOH 152 5 HOH HOH 220 A HOH 21 5 HOH HOH 221 A HOH 26 5 HOH HOH 222 A HOH 66 5 HOH HOH 223 A HOH 177 5 HOH HOH 224 A HOH 7 5 HOH HOH 225 A HOH 51 5 HOH HOH 226 A HOH 65 5 HOH HOH 227 A HOH 119 5 HOH HOH 228 A HOH 55 5 HOH HOH 229 A HOH 192 5 HOH HOH 230 A HOH 121 5 HOH HOH 231 A HOH 182 5 HOH HOH 232 A HOH 67 5 HOH HOH 233 A HOH 155 5 HOH HOH 234 A HOH 123 5 HOH HOH 235 A HOH 25 5 HOH HOH 236 A HOH 95 5 HOH HOH 237 A HOH 130 5 HOH HOH 238 A HOH 40 5 HOH HOH 239 A HOH 3 5 HOH HOH 240 A HOH 131 5 HOH HOH 241 A HOH 144 5 HOH HOH 242 A HOH 189 5 HOH HOH 243 A HOH 116 5 HOH HOH 244 A HOH 160 5 HOH HOH 245 A HOH 106 5 HOH HOH 246 A HOH 105 5 HOH HOH 247 A HOH 184 5 HOH HOH 248 A HOH 191 5 HOH HOH 249 A HOH 175 5 HOH HOH 250 A HOH 165 5 HOH HOH 251 A HOH 86 5 HOH HOH 252 A HOH 190 5 HOH HOH 253 A HOH 87 5 HOH HOH 254 A HOH 178 5 HOH HOH 255 A HOH 181 5 HOH HOH 256 A HOH 94 5 HOH HOH 301 B HOH 31 5 HOH HOH 302 B HOH 75 5 HOH HOH 303 B HOH 92 5 HOH HOH 304 B HOH 27 5 HOH HOH 305 B HOH 115 5 HOH HOH 306 B HOH 9 5 HOH HOH 307 B HOH 2 5 HOH HOH 308 B HOH 30 5 HOH HOH 309 B HOH 187 5 HOH HOH 310 B HOH 52 5 HOH HOH 311 B HOH 108 5 HOH HOH 312 B HOH 17 5 HOH HOH 313 B HOH 22 5 HOH HOH 314 B HOH 48 5 HOH HOH 315 B HOH 172 5 HOH HOH 316 B HOH 23 5 HOH HOH 317 B HOH 120 5 HOH HOH 318 B HOH 158 5 HOH HOH 319 B HOH 99 5 HOH HOH 320 B HOH 110 5 HOH HOH 321 B HOH 82 5 HOH HOH 322 B HOH 128 5 HOH HOH 323 B HOH 71 5 HOH HOH 324 B HOH 132 5 HOH HOH 325 B HOH 147 5 HOH HOH 326 B HOH 83 5 HOH HOH 327 B HOH 156 5 HOH HOH 328 B HOH 96 5 HOH HOH 329 B HOH 107 5 HOH HOH 330 B HOH 93 5 HOH HOH 331 B HOH 4 5 HOH HOH 332 B HOH 171 5 HOH HOH 333 B HOH 188 5 HOH HOH 334 B HOH 145 5 HOH HOH 335 B HOH 109 5 HOH HOH 336 B HOH 185 5 HOH HOH 337 B HOH 170 5 HOH HOH 338 B HOH 166 5 HOH HOH 339 B HOH 72 5 HOH HOH 340 B HOH 167 5 HOH HOH 341 B HOH 103 5 HOH HOH 101 C HOH 186 5 HOH HOH 102 C HOH 45 5 HOH HOH 103 C HOH 38 5 HOH HOH 104 C HOH 42 5 HOH HOH 105 C HOH 163 5 HOH HOH 106 C HOH 24 5 HOH HOH 107 C HOH 100 5 HOH HOH 108 C HOH 8 5 HOH HOH 109 C HOH 98 5 HOH HOH 110 C HOH 161 5 HOH HOH 111 C HOH 139 5 HOH HOH 112 C HOH 129 5 HOH HOH 113 C HOH 68 5 HOH HOH 114 C HOH 112 5 HOH HOH 115 C HOH 153 5 HOH HOH 116 C HOH 56 5 HOH HOH 117 C HOH 18 5 HOH HOH 118 C HOH 73 5 HOH HOH 119 C HOH 60 5 HOH HOH 120 C HOH 137 5 HOH HOH 121 C HOH 15 5 HOH HOH 122 C HOH 43 5 HOH HOH 123 C HOH 135 5 HOH HOH 124 C HOH 125 5 HOH HOH 125 C HOH 134 5 HOH HOH 126 C HOH 143 5 HOH HOH 127 C HOH 5 5 HOH HOH 128 C HOH 104 5 HOH HOH 129 C HOH 54 5 HOH HOH 130 C HOH 90 5 HOH HOH 131 C HOH 114 5 HOH HOH 132 C HOH 81 5 HOH HOH 133 C HOH 157 5 HOH HOH 134 C HOH 124 5 HOH HOH 135 C HOH 41 5 HOH HOH 136 C HOH 195 5 HOH HOH 137 C HOH 149 5 HOH HOH 138 C HOH 39 5 HOH HOH 139 C HOH 141 5 HOH HOH 140 C HOH 142 5 HOH HOH 141 C HOH 117 5 HOH HOH 142 C HOH 111 5 HOH HOH 143 C HOH 118 5 HOH HOH 144 C HOH 69 5 HOH HOH 145 C HOH 174 5 HOH HOH 301 D HOH 34 5 HOH HOH 302 D HOH 77 5 HOH HOH 303 D HOH 46 5 HOH HOH 304 D HOH 80 5 HOH HOH 305 D HOH 28 5 HOH HOH 306 D HOH 44 5 HOH HOH 307 D HOH 127 5 HOH HOH 308 D HOH 53 5 HOH HOH 309 D HOH 122 5 HOH HOH 310 D HOH 79 5 HOH HOH 311 D HOH 36 5 HOH HOH 312 D HOH 85 5 HOH HOH 313 D HOH 168 5 HOH HOH 314 D HOH 101 5 HOH HOH 315 D HOH 180 5 HOH HOH 316 D HOH 47 5 HOH HOH 317 D HOH 16 5 HOH HOH 318 D HOH 126 5 HOH HOH 319 D HOH 12 5 HOH HOH 320 D HOH 57 5 HOH HOH 321 D HOH 61 5 HOH HOH 322 D HOH 37 5 HOH HOH 323 D HOH 136 5 HOH HOH 324 D HOH 140 5 HOH HOH 325 D HOH 113 5 HOH HOH 326 D HOH 173 5 HOH HOH 327 D HOH 162 5 HOH HOH 328 D HOH 193 5 HOH HOH 329 D HOH 88 5 HOH HOH 330 D HOH 138 5 HOH HOH 331 D HOH 133 5 HOH HOH 332 D HOH 146 5 HOH HOH 333 D HOH 49 5 HOH HOH 334 D HOH 6 5 HOH HOH 335 D HOH 63 5 HOH HOH 336 D HOH 50 5 HOH HOH 337 D HOH 78 5 HOH HOH 338 D HOH 97 5 HOH HOH 339 D HOH 164 5 HOH HOH 340 D HOH 176 5 HOH HOH 341 D HOH 70 5 HOH HOH 342 D HOH 91 5 HOH HOH 343 D HOH 150 5 HOH HOH 344 D HOH 151 5 HOH HOH 345 D HOH 196 5 HOH HOH 346 D HOH 169 5 HOH HOH 347 D HOH 35 5 HOH HOH 348 D HOH 84 5 HOH HOH 349 D HOH 194 5 HOH HOH 350 D n 1 -19 A n 2 -18 A n 3 -17 A n 4 -16 A n 5 -15 A n 6 -14 A n 7 -13 A n 8 -12 A n 9 -11 A n 10 -10 A n 11 -9 A n 12 -8 A n 13 -7 A n 14 -6 A n 15 -5 A n 16 -4 A n 17 -3 A n 18 -2 A n 19 -1 A n 20 0 A n 21 1 A n 22 2 A n 23 3 A n 24 4 A n 25 5 A n 26 6 A n 27 7 A TYR 8 n 28 TYR 8 A ASP 9 n 29 ASP 9 A CYS 10 n 30 CYS 10 A PHE 11 n 31 PHE 11 A ARG 12 n 32 ARG 12 A ILE 13 n 33 ILE 13 A ALA 14 n 34 ALA 14 A MET 15 n 35 MET 15 A LEU 16 n 36 LEU 16 A LEU 17 n 37 LEU 17 A LYS 18 n 38 LYS 18 A GLU 19 n 39 GLU 19 A LEU 20 n 40 LEU 20 A TYR 21 n 41 TYR 21 A SER 22 n 42 SER 22 A LYS 23 n 43 LYS 23 A THR 24 n 44 THR 24 A MET 25 n 45 MET 25 A TYR 26 n 46 TYR 26 A THR 27 n 47 THR 27 A VAL 28 n 48 VAL 28 A GLU 29 n 49 GLU 29 A GLU 30 n 50 GLU 30 A ASN 31 n 51 ASN 31 A PHE 32 n 52 PHE 32 A LYS 33 n 53 LYS 33 A GLU 34 n 54 GLU 34 A ASN 35 n 55 ASN 35 A GLY 36 n 56 GLY 36 A LEU 37 n 57 LEU 37 A THR 38 n 58 THR 38 A ALA 39 n 59 ALA 39 A GLN 40 n 60 GLN 40 A GLN 41 n 61 GLN 41 A ILE 42 n 62 ILE 42 A ILE 43 n 63 ILE 43 A VAL 44 n 64 VAL 44 A ILE 45 n 65 ILE 45 A LYS 46 n 66 LYS 46 A LEU 47 n 67 LEU 47 A VAL 48 n 68 VAL 48 A ALA 49 n 69 ALA 49 A HIS 50 n 70 HIS 50 A ASN 51 n 71 ASN 51 A GLN 52 n 72 GLN 52 A GLU 53 n 73 GLU 53 A LEU 54 n 74 LEU 54 A THR 55 n 75 THR 55 A ILE 56 n 76 ILE 56 A SER 57 n 77 SER 57 A GLN 58 n 78 GLN 58 A LEU 59 n 79 LEU 59 A CYS 60 n 80 CYS 60 A ASP 61 n 81 ASP 61 A GLU 62 n 82 GLU 62 A MET 63 n 83 MET 63 A SER 64 n 84 SER 64 A LEU 65 n 85 LEU 65 A ALA 66 n 86 ALA 66 A LYS 67 n 87 LYS 67 A GLY 68 n 88 GLY 68 A THR 69 n 89 THR 69 A VAL 70 n 90 VAL 70 A SER 71 n 91 SER 71 A GLY 72 n 92 GLY 72 A ILE 73 n 93 ILE 73 A ILE 74 n 94 ILE 74 A SER 75 n 95 SER 75 A ARG 76 n 96 ARG 76 A LEU 77 n 97 LEU 77 A GLU 78 n 98 GLU 78 A GLN 79 n 99 GLN 79 A ILE 80 n 100 ILE 80 A GLY 81 n 101 GLY 81 A TYR 82 n 102 TYR 82 A ILE 83 n 103 ILE 83 A GLU 84 n 104 GLU 84 A LYS 85 n 105 LYS 85 A PHE 86 n 106 PHE 86 A LYS 87 n 107 LYS 87 A LYS 88 n 108 LYS 88 A SER 89 n 109 SER 89 A ASN 90 n 110 ASN 90 A ASP 91 n 111 ASP 91 A LYS 92 n 112 LYS 92 A ARG 93 n 113 ARG 93 A ASN 94 n 114 ASN 94 A THR 95 n 115 THR 95 A TYR 96 n 116 TYR 96 A VAL 97 n 117 VAL 97 A LYS 98 n 118 LYS 98 A PHE 99 n 119 PHE 99 A THR 100 n 120 THR 100 A THR 101 n 121 THR 101 A THR 102 n 122 THR 102 A GLY 103 n 123 GLY 103 A PHE 104 n 124 PHE 104 A GLU 105 n 125 GLU 105 A PHE 106 n 126 PHE 106 A ALA 107 n 127 ALA 107 A THR 108 n 128 THR 108 A ASN 109 n 129 ASN 109 A PHE 110 n 130 PHE 110 A LYS 111 n 131 LYS 111 A ILE 112 n 132 ILE 112 A LYS 113 n 133 LYS 113 A MET 114 n 134 MET 114 A GLN 115 n 135 GLN 115 A GLU 116 n 136 GLU 116 A SER 117 n 137 SER 117 A PHE 118 n 138 PHE 118 A ASP 119 n 139 ASP 119 A ASP 120 n 140 ASP 120 A ILE 121 n 141 ILE 121 A PHE 122 n 142 PHE 122 A LYS 123 n 143 LYS 123 A ASN 124 n 144 ASN 124 A CYS 125 n 145 CYS 125 A ASP 126 n 146 ASP 126 A GLU 127 n 147 GLU 127 A ASN 128 n 148 ASN 128 A GLU 129 n 149 GLU 129 A LEU 130 n 150 LEU 130 A SER 131 n 151 SER 131 A ASP 132 n 152 ASP 132 A LEU 133 n 153 LEU 133 A VAL 134 n 154 VAL 134 A LYS 135 n 155 LYS 135 A ASN 136 n 156 ASN 136 A LEU 137 n 157 LEU 137 A ARG 138 n 158 ARG 138 A ASN 139 n 159 ASN 139 A ILE 140 n 160 ILE 140 A LEU 141 n 161 LEU 141 A ALA 142 n 162 ALA 142 A LYS 143 n 163 LYS 143 A VAL 144 n 164 VAL 144 A LYS 145 n 165 LYS 145 A n 166 146 A n 167 147 A n 1 -19 B n 2 -18 B n 3 -17 B n 4 -16 B n 5 -15 B n 6 -14 B n 7 -13 B n 8 -12 B n 9 -11 B n 10 -10 B n 11 -9 B n 12 -8 B n 13 -7 B n 14 -6 B n 15 -5 B n 16 -4 B n 17 -3 B n 18 -2 B n 19 -1 B n 20 0 B n 21 1 B n 22 2 B n 23 3 B n 24 4 B n 25 5 B n 26 6 B n 27 7 B TYR 8 n 28 TYR 8 B ASP 9 n 29 ASP 9 B CYS 10 n 30 CYS 10 B PHE 11 n 31 PHE 11 B ARG 12 n 32 ARG 12 B ILE 13 n 33 ILE 13 B ALA 14 n 34 ALA 14 B MET 15 n 35 MET 15 B LEU 16 n 36 LEU 16 B LEU 17 n 37 LEU 17 B LYS 18 n 38 LYS 18 B GLU 19 n 39 GLU 19 B LEU 20 n 40 LEU 20 B TYR 21 n 41 TYR 21 B SER 22 n 42 SER 22 B LYS 23 n 43 LYS 23 B THR 24 n 44 THR 24 B MET 25 n 45 MET 25 B TYR 26 n 46 TYR 26 B THR 27 n 47 THR 27 B VAL 28 n 48 VAL 28 B GLU 29 n 49 GLU 29 B GLU 30 n 50 GLU 30 B ASN 31 n 51 ASN 31 B PHE 32 n 52 PHE 32 B LYS 33 n 53 LYS 33 B GLU 34 n 54 GLU 34 B ASN 35 n 55 ASN 35 B GLY 36 n 56 GLY 36 B LEU 37 n 57 LEU 37 B THR 38 n 58 THR 38 B ALA 39 n 59 ALA 39 B GLN 40 n 60 GLN 40 B GLN 41 n 61 GLN 41 B ILE 42 n 62 ILE 42 B ILE 43 n 63 ILE 43 B VAL 44 n 64 VAL 44 B ILE 45 n 65 ILE 45 B LYS 46 n 66 LYS 46 B LEU 47 n 67 LEU 47 B VAL 48 n 68 VAL 48 B ALA 49 n 69 ALA 49 B HIS 50 n 70 HIS 50 B ASN 51 n 71 ASN 51 B GLN 52 n 72 GLN 52 B GLU 53 n 73 GLU 53 B LEU 54 n 74 LEU 54 B THR 55 n 75 THR 55 B ILE 56 n 76 ILE 56 B SER 57 n 77 SER 57 B GLN 58 n 78 GLN 58 B LEU 59 n 79 LEU 59 B CYS 60 n 80 CYS 60 B ASP 61 n 81 ASP 61 B GLU 62 n 82 GLU 62 B MET 63 n 83 MET 63 B SER 64 n 84 SER 64 B LEU 65 n 85 LEU 65 B ALA 66 n 86 ALA 66 B LYS 67 n 87 LYS 67 B GLY 68 n 88 GLY 68 B THR 69 n 89 THR 69 B VAL 70 n 90 VAL 70 B SER 71 n 91 SER 71 B GLY 72 n 92 GLY 72 B ILE 73 n 93 ILE 73 B ILE 74 n 94 ILE 74 B SER 75 n 95 SER 75 B ARG 76 n 96 ARG 76 B LEU 77 n 97 LEU 77 B GLU 78 n 98 GLU 78 B GLN 79 n 99 GLN 79 B ILE 80 n 100 ILE 80 B GLY 81 n 101 GLY 81 B TYR 82 n 102 TYR 82 B ILE 83 n 103 ILE 83 B GLU 84 n 104 GLU 84 B LYS 85 n 105 LYS 85 B PHE 86 n 106 PHE 86 B LYS 87 n 107 LYS 87 B LYS 88 n 108 LYS 88 B SER 89 n 109 SER 89 B ASN 90 n 110 ASN 90 B ASP 91 n 111 ASP 91 B LYS 92 n 112 LYS 92 B ARG 93 n 113 ARG 93 B ASN 94 n 114 ASN 94 B THR 95 n 115 THR 95 B TYR 96 n 116 TYR 96 B VAL 97 n 117 VAL 97 B LYS 98 n 118 LYS 98 B PHE 99 n 119 PHE 99 B THR 100 n 120 THR 100 B THR 101 n 121 THR 101 B THR 102 n 122 THR 102 B GLY 103 n 123 GLY 103 B PHE 104 n 124 PHE 104 B GLU 105 n 125 GLU 105 B PHE 106 n 126 PHE 106 B ALA 107 n 127 ALA 107 B THR 108 n 128 THR 108 B ASN 109 n 129 ASN 109 B PHE 110 n 130 PHE 110 B LYS 111 n 131 LYS 111 B ILE 112 n 132 ILE 112 B LYS 113 n 133 LYS 113 B MET 114 n 134 MET 114 B GLN 115 n 135 GLN 115 B GLU 116 n 136 GLU 116 B SER 117 n 137 SER 117 B PHE 118 n 138 PHE 118 B ASP 119 n 139 ASP 119 B ASP 120 n 140 ASP 120 B ILE 121 n 141 ILE 121 B PHE 122 n 142 PHE 122 B LYS 123 n 143 LYS 123 B ASN 124 n 144 ASN 124 B CYS 125 n 145 CYS 125 B ASP 126 n 146 ASP 126 B GLU 127 n 147 GLU 127 B ASN 128 n 148 ASN 128 B GLU 129 n 149 GLU 129 B LEU 130 n 150 LEU 130 B SER 131 n 151 SER 131 B ASP 132 n 152 ASP 132 B LEU 133 n 153 LEU 133 B VAL 134 n 154 VAL 134 B LYS 135 n 155 LYS 135 B ASN 136 n 156 ASN 136 B LEU 137 n 157 LEU 137 B ARG 138 n 158 ARG 138 B ASN 139 n 159 ASN 139 B ILE 140 n 160 ILE 140 B LEU 141 n 161 LEU 141 B ALA 142 n 162 ALA 142 B LYS 143 n 163 LYS 143 B VAL 144 n 164 VAL 144 B LYS 145 n 165 LYS 145 B n 166 146 B n 167 147 B DA 1 n 1 DA 1 C DT 2 n 2 DT 2 C DT 3 n 3 DT 3 C DA 4 n 4 DA 4 C DG 5 n 5 DG 5 C DT 6 n 6 DT 6 C DT 7 n 7 DT 7 C DT 8 n 8 DT 8 C DG 9 n 9 DG 9 C DT 10 n 10 DT 10 C DA 11 n 11 DA 11 C DT 12 n 12 DT 12 C DG 13 n 13 DG 13 C DC 14 n 14 DC 14 C DA 15 n 15 DA 15 C DA 16 n 16 DA 16 C DA 17 n 17 DA 17 C DC 18 n 18 DC 18 C DC 19 n 19 DC 19 C DA 20 n 20 DA 20 C DT 21 n 21 DT 21 C DT 22 n 22 DT 22 C DA 1 n 1 DA 1 D DA 2 n 2 DA 2 D DT 3 n 3 DT 3 D DG 4 n 4 DG 4 D DG 5 n 5 DG 5 D DT 6 n 6 DT 6 D DT 7 n 7 DT 7 D DT 8 n 8 DT 8 D DG 9 n 9 DG 9 D DC 10 n 10 DC 10 D DA 11 n 11 DA 11 D DT 12 n 12 DT 12 D DA 13 n 13 DA 13 D DC 14 n 14 DC 14 D DA 15 n 15 DA 15 D DA 16 n 16 DA 16 D DA 17 n 17 DA 17 D DC 18 n 18 DC 18 D DT 19 n 19 DT 19 D DA 20 n 20 DA 20 D DA 21 n 21 DA 21 D DT 22 n 22 DT 22 D author_and_software_defined_assembly PISA 4 tetrameric none 10320 -78 19130 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 54 A N LEU 74 A O VAL 97 A O VAL 117 A O LYS 98 A O LYS 118 A N GLU 84 A N GLU 104 B N LEU 54 B N LEU 74 B O VAL 97 B O VAL 117 B O LYS 98 B O LYS 118 B N GLU 84 B N GLU 104 1 A MET -19 A MET 1 1 Y 1 A GLY -18 A GLY 2 1 Y 1 A SER -17 A SER 3 1 Y 1 A SER -16 A SER 4 1 Y 1 A HIS -15 A HIS 5 1 Y 1 A HIS -14 A HIS 6 1 Y 1 A HIS -13 A HIS 7 1 Y 1 A HIS -12 A HIS 8 1 Y 1 A HIS -11 A HIS 9 1 Y 1 A HIS -10 A HIS 10 1 Y 1 A SER -9 A SER 11 1 Y 1 A SER -8 A SER 12 1 Y 1 A GLY -7 A GLY 13 1 Y 1 A LEU -6 A LEU 14 1 Y 1 A VAL -5 A VAL 15 1 Y 1 A PRO -4 A PRO 16 1 Y 1 A ARG -3 A ARG 17 1 Y 1 A GLY -2 A GLY 18 1 Y 1 A SER -1 A SER 19 1 Y 1 A HIS 0 A HIS 20 1 Y 1 A MET 1 A MET 21 1 Y 1 A ILE 2 A ILE 22 1 Y 1 A LEU 3 A LEU 23 1 Y 1 A LEU 4 A LEU 24 1 Y 1 A LYS 5 A LYS 25 1 Y 1 A SER 6 A SER 26 1 Y 1 A ASN 7 A ASN 27 1 Y 1 A GLU 146 A GLU 166 1 Y 1 A ARG 147 A ARG 167 1 Y 1 B MET -19 B MET 1 1 Y 1 B GLY -18 B GLY 2 1 Y 1 B SER -17 B SER 3 1 Y 1 B SER -16 B SER 4 1 Y 1 B HIS -15 B HIS 5 1 Y 1 B HIS -14 B HIS 6 1 Y 1 B HIS -13 B HIS 7 1 Y 1 B HIS -12 B HIS 8 1 Y 1 B HIS -11 B HIS 9 1 Y 1 B HIS -10 B HIS 10 1 Y 1 B SER -9 B SER 11 1 Y 1 B SER -8 B SER 12 1 Y 1 B GLY -7 B GLY 13 1 Y 1 B LEU -6 B LEU 14 1 Y 1 B VAL -5 B VAL 15 1 Y 1 B PRO -4 B PRO 16 1 Y 1 B ARG -3 B ARG 17 1 Y 1 B GLY -2 B GLY 18 1 Y 1 B SER -1 B SER 19 1 Y 1 B HIS 0 B HIS 20 1 Y 1 B MET 1 B MET 21 1 Y 1 B ILE 2 B ILE 22 1 Y 1 B LEU 3 B LEU 23 1 Y 1 B LEU 4 B LEU 24 1 Y 1 B LYS 5 B LYS 25 1 Y 1 B SER 6 B SER 26 1 Y 1 B ASN 7 B ASN 27 1 Y 1 B GLU 146 B GLU 166 1 Y 1 B ARG 147 B ARG 167 1 Y 1 A GLN 52 77.62 -52.85 1 A ASP 91 -164.58 101.05 1 B GLU 34 -39.95 -39.57 1 B ASN 124 -94.74 31.54 52.975 -0.35 -0.00 0.17 0.19 -0.00 0.12 0.965 0.940 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23917 0.18070 0.18358 2.20 50.0 1193 22736 5.0 99.65 6.019 0.150 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.242 0.205 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 2.20 50.0 192 3342 10 896 2244 0.014 0.017 3284 0.002 0.020 2746 1.756 1.704 4600 1.207 3.000 6370 6.346 5.000 274 36.770 25.741 108 16.258 15.000 468 15.061 15.000 8 0.091 0.200 482 0.010 0.020 3034 0.002 0.020 704 4.569 5.365 1102 4.552 5.363 1101 6.350 8.021 1374 6.352 8.025 1375 5.224 5.165 2181 5.004 5.158 2172 7.227 7.564 3215 9.297 41.804 4177 9.245 41.737 4107 0.350 0.244 2.257 92 1666 20 100.00 2.2 50 9VG2 23925 0.998 0.062 1 28.1 3.3 99.9 0.581 2.20 2.24 1466 0.883 1 refinement REFMAC 5.8.0103 data extraction PDB_EXTRACT data reduction HKL-2000 data scaling HKL-2000 phasing PHASER N Crystal structure of C. difficile HsmR with DNA bound 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N 5 N N 5 N N A CYS 10 A CYS 30 HELX_P A LYS 33 A LYS 53 1 AA1 24 A GLU 34 A GLU 54 HELX_P A GLY 36 A GLY 56 5 AA2 3 A THR 38 A THR 58 HELX_P A GLN 52 A GLN 72 1 AA3 15 A ILE 56 A ILE 76 HELX_P A SER 64 A SER 84 1 AA4 9 A ALA 66 A ALA 86 HELX_P A ILE 80 A ILE 100 1 AA5 15 A THR 100 A THR 120 HELX_P A PHE 110 A PHE 130 1 AA6 11 A PHE 110 A PHE 130 HELX_P A ILE 121 A ILE 141 1 AA7 12 A ASP 126 A ASP 146 HELX_P A LYS 145 A LYS 165 1 AA8 20 B CYS 10 B CYS 30 HELX_P B LYS 33 B LYS 53 1 AA9 24 B THR 38 B THR 58 HELX_P B ASN 51 B ASN 71 1 AB1 14 B ILE 56 B ILE 76 HELX_P B SER 64 B SER 84 1 AB2 9 B ALA 66 B ALA 86 HELX_P B ILE 80 B ILE 100 1 AB3 15 B THR 100 B THR 120 HELX_P B PHE 110 B PHE 130 1 AB4 11 B PHE 110 B PHE 130 HELX_P B ILE 121 B ILE 141 1 AB5 12 B ASP 126 B ASP 146 HELX_P B VAL 144 B VAL 164 1 AB6 19 hydrog WATSON-CRICK C DA 1 C N1 DA 1 1_555 D DT 22 D N3 DT 22 1_555 hydrog WATSON-CRICK C DA 1 C N6 DA 1 1_555 D DT 22 D O4 DT 22 1_555 hydrog WATSON-CRICK C DT 2 C N3 DT 2 1_555 D DA 21 D N1 DA 21 1_555 hydrog WATSON-CRICK C DT 2 C O4 DT 2 1_555 D DA 21 D N6 DA 21 1_555 hydrog WATSON-CRICK C DT 3 C N3 DT 3 1_555 D DA 20 D N1 DA 20 1_555 hydrog WATSON-CRICK C DT 3 C O4 DT 3 1_555 D DA 20 D N6 DA 20 1_555 hydrog WATSON-CRICK C DA 4 C N1 DA 4 1_555 D DT 19 D N3 DT 19 1_555 hydrog WATSON-CRICK C DA 4 C N6 DA 4 1_555 D DT 19 D O4 DT 19 1_555 hydrog WATSON-CRICK C DG 5 C N1 DG 5 1_555 D DC 18 D N3 DC 18 1_555 hydrog WATSON-CRICK C DG 5 C N2 DG 5 1_555 D DC 18 D O2 DC 18 1_555 hydrog WATSON-CRICK C DG 5 C O6 DG 5 1_555 D DC 18 D N4 DC 18 1_555 hydrog WATSON-CRICK C DT 6 C N3 DT 6 1_555 D DA 17 D N1 DA 17 1_555 hydrog WATSON-CRICK C DT 6 C O4 DT 6 1_555 D DA 17 D N6 DA 17 1_555 hydrog WATSON-CRICK C DT 7 C N3 DT 7 1_555 D DA 16 D N1 DA 16 1_555 hydrog WATSON-CRICK C DT 7 C O4 DT 7 1_555 D DA 16 D N6 DA 16 1_555 hydrog WATSON-CRICK C DT 8 C N3 DT 8 1_555 D DA 15 D N1 DA 15 1_555 hydrog WATSON-CRICK C DT 8 C O4 DT 8 1_555 D DA 15 D N6 DA 15 1_555 hydrog WATSON-CRICK C DG 9 C N1 DG 9 1_555 D DC 14 D N3 DC 14 1_555 hydrog WATSON-CRICK C DG 9 C N2 DG 9 1_555 D DC 14 D O2 DC 14 1_555 hydrog WATSON-CRICK C DG 9 C O6 DG 9 1_555 D DC 14 D N4 DC 14 1_555 hydrog WATSON-CRICK C DT 10 C N3 DT 10 1_555 D DA 13 D N1 DA 13 1_555 hydrog WATSON-CRICK C DT 10 C O4 DT 10 1_555 D DA 13 D N6 DA 13 1_555 hydrog WATSON-CRICK C DA 11 C N1 DA 11 1_555 D DT 12 D N3 DT 12 1_555 hydrog WATSON-CRICK C DA 11 C N6 DA 11 1_555 D DT 12 D O4 DT 12 1_555 hydrog WATSON-CRICK C DT 12 C N3 DT 12 1_555 D DA 11 D N1 DA 11 1_555 hydrog WATSON-CRICK C DT 12 C O4 DT 12 1_555 D DA 11 D N6 DA 11 1_555 hydrog WATSON-CRICK C DG 13 C N1 DG 13 1_555 D DC 10 D N3 DC 10 1_555 hydrog WATSON-CRICK C DG 13 C N2 DG 13 1_555 D DC 10 D O2 DC 10 1_555 hydrog WATSON-CRICK C DG 13 C O6 DG 13 1_555 D DC 10 D N4 DC 10 1_555 hydrog WATSON-CRICK C DC 14 C N3 DC 14 1_555 D DG 9 D N1 DG 9 1_555 hydrog WATSON-CRICK C DC 14 C N4 DC 14 1_555 D DG 9 D O6 DG 9 1_555 hydrog WATSON-CRICK C DC 14 C O2 DC 14 1_555 D DG 9 D N2 DG 9 1_555 hydrog WATSON-CRICK C DA 15 C N1 DA 15 1_555 D DT 8 D N3 DT 8 1_555 hydrog WATSON-CRICK C DA 15 C N6 DA 15 1_555 D DT 8 D O4 DT 8 1_555 hydrog WATSON-CRICK C DA 16 C N1 DA 16 1_555 D DT 7 D N3 DT 7 1_555 hydrog WATSON-CRICK C DA 16 C N6 DA 16 1_555 D DT 7 D O4 DT 7 1_555 hydrog WATSON-CRICK C DA 17 C N1 DA 17 1_555 D DT 6 D N3 DT 6 1_555 hydrog WATSON-CRICK C DA 17 C N6 DA 17 1_555 D DT 6 D O4 DT 6 1_555 hydrog WATSON-CRICK C DC 18 C N3 DC 18 1_555 D DG 5 D N1 DG 5 1_555 hydrog WATSON-CRICK C DC 18 C N4 DC 18 1_555 D DG 5 D O6 DG 5 1_555 hydrog WATSON-CRICK C DC 18 C O2 DC 18 1_555 D DG 5 D N2 DG 5 1_555 hydrog WATSON-CRICK C DC 19 C N3 DC 19 1_555 D DG 4 D N1 DG 4 1_555 hydrog WATSON-CRICK C DC 19 C N4 DC 19 1_555 D DG 4 D O6 DG 4 1_555 hydrog WATSON-CRICK C DC 19 C O2 DC 19 1_555 D DG 4 D N2 DG 4 1_555 hydrog WATSON-CRICK C DA 20 C N1 DA 20 1_555 D DT 3 D N3 DT 3 1_555 hydrog WATSON-CRICK C DA 20 C N6 DA 20 1_555 D DT 3 D O4 DT 3 1_555 hydrog WATSON-CRICK C DT 21 C N3 DT 21 1_555 D DA 2 D N1 DA 2 1_555 hydrog WATSON-CRICK C DT 21 C O4 DT 21 1_555 D DA 2 D N6 DA 2 1_555 hydrog WATSON-CRICK C DT 22 C N3 DT 22 1_555 D DA 1 D N1 DA 1 1_555 hydrog WATSON-CRICK C DT 22 C O4 DT 22 1_555 D DA 1 D N6 DA 1 1_555 TRANSCRIPTION MarR, TRANSCRIPTION A0A9R0BIW1_CLODR UNP 1 1 A0A9R0BIW1 MILLKSNYDCFRIAMLLKELYSKTMYTVEENFKENGLTHQQIIVIKLVAHNQELTISQLCDEMSLAKGTVSGIISRLEQI GYIEKFKKSNDKRNTYVKFTTTGFEFATNFKIKMQESFDDIFKNCDENELSDLVKNLRNILAKVKER 9VG2 PDB 2 1 9VG2 9VG2 PDB 3 1 9VG2 1 147 9VG2 1 147 A0A9R0BIW1 A 1 21 167 1 147 9VG2 1 147 A0A9R0BIW1 B 1 21 167 1 22 9VG2 1 22 9VG2 C 2 1 22 1 22 9VG2 1 22 9VG2 D 3 1 22 1 initiating methionine MET -19 9VG2 A A0A9R0BIW1 UNP 1 1 expression tag GLY -18 9VG2 A A0A9R0BIW1 UNP 2 1 expression tag SER -17 9VG2 A A0A9R0BIW1 UNP 3 1 expression tag SER -16 9VG2 A A0A9R0BIW1 UNP 4 1 expression tag HIS -15 9VG2 A A0A9R0BIW1 UNP 5 1 expression tag HIS -14 9VG2 A A0A9R0BIW1 UNP 6 1 expression tag HIS -13 9VG2 A A0A9R0BIW1 UNP 7 1 expression tag HIS -12 9VG2 A A0A9R0BIW1 UNP 8 1 expression tag HIS -11 9VG2 A A0A9R0BIW1 UNP 9 1 expression tag HIS -10 9VG2 A A0A9R0BIW1 UNP 10 1 expression tag SER -9 9VG2 A A0A9R0BIW1 UNP 11 1 expression tag SER -8 9VG2 A A0A9R0BIW1 UNP 12 1 expression tag GLY -7 9VG2 A A0A9R0BIW1 UNP 13 1 expression tag LEU -6 9VG2 A A0A9R0BIW1 UNP 14 1 expression tag VAL -5 9VG2 A A0A9R0BIW1 UNP 15 1 expression tag PRO -4 9VG2 A A0A9R0BIW1 UNP 16 1 expression tag ARG -3 9VG2 A A0A9R0BIW1 UNP 17 1 expression tag GLY -2 9VG2 A A0A9R0BIW1 UNP 18 1 expression tag SER -1 9VG2 A A0A9R0BIW1 UNP 19 1 expression tag HIS 0 9VG2 A A0A9R0BIW1 UNP 20 1 HIS conflict ALA 39 9VG2 A A0A9R0BIW1 UNP 39 59 2 initiating methionine MET -19 9VG2 B A0A9R0BIW1 UNP 1 2 expression tag GLY -18 9VG2 B A0A9R0BIW1 UNP 2 2 expression tag SER -17 9VG2 B A0A9R0BIW1 UNP 3 2 expression tag SER -16 9VG2 B A0A9R0BIW1 UNP 4 2 expression tag HIS -15 9VG2 B A0A9R0BIW1 UNP 5 2 expression tag HIS -14 9VG2 B A0A9R0BIW1 UNP 6 2 expression tag HIS -13 9VG2 B A0A9R0BIW1 UNP 7 2 expression tag HIS -12 9VG2 B A0A9R0BIW1 UNP 8 2 expression tag HIS -11 9VG2 B A0A9R0BIW1 UNP 9 2 expression tag HIS -10 9VG2 B A0A9R0BIW1 UNP 10 2 expression tag SER -9 9VG2 B A0A9R0BIW1 UNP 11 2 expression tag SER -8 9VG2 B A0A9R0BIW1 UNP 12 2 expression tag GLY -7 9VG2 B A0A9R0BIW1 UNP 13 2 expression tag LEU -6 9VG2 B A0A9R0BIW1 UNP 14 2 expression tag VAL -5 9VG2 B A0A9R0BIW1 UNP 15 2 expression tag PRO -4 9VG2 B A0A9R0BIW1 UNP 16 2 expression tag ARG -3 9VG2 B A0A9R0BIW1 UNP 17 2 expression tag GLY -2 9VG2 B A0A9R0BIW1 UNP 18 2 expression tag SER -1 9VG2 B A0A9R0BIW1 UNP 19 2 expression tag HIS 0 9VG2 B A0A9R0BIW1 UNP 20 2 HIS conflict ALA 39 9VG2 B A0A9R0BIW1 UNP 39 59 3 3 anti-parallel anti-parallel anti-parallel anti-parallel A LEU 54 A LEU 74 A THR 55 A THR 75 A TYR 96 A TYR 116 A PHE 99 A PHE 119 A ILE 83 A ILE 103 A PHE 86 A PHE 106 B LEU 54 B LEU 74 B THR 55 B THR 75 B ASP 91 B ASP 111 B PHE 99 B PHE 119 B ILE 83 B ILE 103 B LYS 88 B LYS 108 5 C 1 2 1