1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0002-2399-6600 Maity, A. 0000-0003-3066-1494 Lim, K.W. 0000-0002-3223-7366 Shneider, N.A. 0000-0002-8772-9755 Chen, G. 0000-0002-4970-3861 Phan, A.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing To be published 0353 A duplex-quadruplex hybrid formed by d[G4C2] repeats 0000-0002-2399-6600 0000-0003-3066-1494 0000-0002-3223-7366 0000-0002-8772-9755 0000-0002-4970-3861 10.2210/pdb7vf1/pdb pdb_00007vf1 10.13018/BMR36444 4403.828 DNA (14-mer) 2 syn polymer WT14 no no (DG)(DG)(DG)(DG)(DC)(DC)(DG)(DG)(DG)(DG)(DC)(DC)(DG)(DG) GGGGCCGGGGCCGG A,B polydeoxyribonucleotide n n n n n n n n n n n n n n 4.071 1 19 A 5 B 14 -3.682 A_DC5:DG14_B 1 -2.874 -0.543 -0.453 0.025 1.611 1 19 A 6 B 13 -3.908 A_DC6:DG13_B 2 -1.037 -0.474 -0.604 -0.211 1.450 1 19 A 7 B 12 -5.666 A_DG7:DC12_B 3 -0.459 0.608 -0.391 -0.138 0.737 1 19 A 8 B 11 -5.520 A_DG8:DC11_B 4 3.801 0.330 -0.478 -0.167 -5.912 3 6 A 9 B 1 -93.180 A_DG9:DG1_B 5 1.266 1.677 0.103 3.533 -3.751 3 6 B 10 A 2 91.563 B_DG10:DG2_A 6 0.469 -1.593 0.306 -3.579 -3.778 3 6 A 10 B 2 91.555 A_DG10:DG2_B 7 0.455 -1.593 0.305 -3.578 -5.941 3 6 B 9 A 1 -93.174 B_DG9:DG1_A 8 1.251 1.677 0.103 3.535 -0.741 1 19 A 11 B 8 -5.518 A_DC11:DG8_B 9 3.813 -0.330 -0.479 -0.167 -1.444 1 19 A 12 B 7 -5.653 A_DC12:DG7_B 10 -0.444 -0.606 -0.391 -0.140 -1.574 1 19 A 13 B 6 -3.889 A_DG13:DC6_B 11 -1.041 0.476 -0.601 -0.213 -4.066 1 19 A 14 B 5 -3.678 A_DG14:DC5_B 12 -2.851 0.545 -0.453 0.021 4.837 34.195 A A 5 6 -19.926 B B 14 13 4.630 -11.500 0.147 -1.406 AA_DC5DC6:DG13DG14_BB 1 0.642 -1.112 32.251 0.319 -0.099 3.813 32.549 A A 6 7 7.477 B B 13 12 3.997 4.180 0.191 -1.245 AA_DC6DG7:DC12DG13_BB 2 0.691 -1.236 32.280 -3.096 -0.195 2.788 29.254 A A 7 8 19.555 B B 12 11 3.499 9.696 0.268 -1.621 AA_DG7DG8:DC11DC12_BB 3 0.795 -1.604 27.622 -5.290 -0.361 0.831 178.748 A A 8 9 71.284 B B 11 1 3.995 141.975 -2.002 -3.068 AA_DG8DG9:DG1DC11_BB 4 -108.314 54.383 57.030 -2.675 0.130 -0.381 179.167 A B 9 10 0.624 B A 1 2 -0.381 1.247 -1.223 -3.857 AB_DG9DG10:DG2DG1_AB 5 2.019 -1.010 179.166 -1.929 0.612 0.000 -180.000 B A 10 10 -43.529 A B 2 2 0.002 87.057 3.984 -1.885 BA_DG10DG10:DG2DG2_BA 6 156.826 78.413 -179.910 0.942 1.992 0.381 -179.173 A B 10 9 0.618 B A 2 1 0.380 -1.237 1.223 3.857 AB_DG10DG9:DG1DG2_AB 7 -2.021 -1.011 -179.172 -1.929 0.612 3.440 -105.332 B A 9 11 -0.428 A B 1 8 3.452 0.681 0.831 4.095 BA_DG9DC11:DG8DG1_BA 8 -1.253 -0.788 -105.325 -2.585 0.505 2.787 29.264 A A 11 12 19.574 B B 8 7 3.499 9.708 -0.268 -1.621 AA_DC11DC12:DG7DG8_BB 9 -0.788 1.588 27.628 -5.288 0.361 3.813 32.556 A A 12 13 7.479 B B 7 6 3.997 4.181 -0.190 -1.245 AA_DC12DG13:DC6DG7_BB 10 -0.714 1.278 32.286 -3.095 0.190 4.839 34.192 A A 13 14 -19.942 B B 6 5 4.632 -11.508 -0.147 -1.406 AA_DG13DG14:DC5DC6_BB 11 -0.629 1.089 32.245 0.322 0.103 chem_comp_atom chem_comp_bond database_2 repository Initial release Data collection Database references 1 0 2022-09-14 1 1 2024-05-15 _database_2.pdbx_DOI Singapore National Research Foundation (NRF, Singapore) NRF-NRFI2017-09 Solution structure of a duplex-quadruplex hybrid formed by d[G4C2] repeats N PDBJ Y PDBJ 2021-09-10 REL REL REL 32630 synthetic construct sample 1 14 structures with the lowest energy 100 10 isotropic 1 2D 1H-1H NOESY isotropic 1 2D 1H-13C HMBC isotropic 1 2D 1H-1H NOESY isotropic 1 2D 1H-1H COSY isotropic 1 2D 1H-1H TOCSY isotropic 1 2D 1H-13C HSQC aromatic isotropic 1 2D 1H-13C HSQC 1.3 mM natural abundance 20 mM natural abundance 70 mM natural abundance 1.3 mM natural abundance 20 mM natural abundance 70 mM natural abundance 102 mM condition 1 7.0 pH 1 atm 298 K DGSA-distance geometry simulated annealing 1 lowest energy 1.3 mM WT14, 20 mM potassium phosphate, 70 mM potassium chloride, 90% H2O/10% D2O H2O 90% H2O/10% D2O solution 1.3 mM WT14, 20 mM potassium phosphate, 70 mM potassium chloride, 100% D2O D2O 100% D2O solution Bruker Biospin collection TopSpin Goddard peak picking Sparky Goddard chemical shift assignment Sparky Goddard data analysis Sparky Schwieters, Kuszewski, Tjandra and Clore structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 600 Bruker AVANCE II DG 1 n 1 DG 1 A DG 2 n 2 DG 2 A DG 3 n 3 DG 3 A DG 4 n 4 DG 4 A DC 5 n 5 DC 5 A DC 6 n 6 DC 6 A DG 7 n 7 DG 7 A DG 8 n 8 DG 8 A DG 9 n 9 DG 9 A DG 10 n 10 DG 10 A DC 11 n 11 DC 11 A DC 12 n 12 DC 12 A DG 13 n 13 DG 13 A DG 14 n 14 DG 14 A DG 1 n 1 DG 1 B DG 2 n 2 DG 2 B DG 3 n 3 DG 3 B DG 4 n 4 DG 4 B DC 5 n 5 DC 5 B DC 6 n 6 DC 6 B DG 7 n 7 DG 7 B DG 8 n 8 DG 8 B DG 9 n 9 DG 9 B DG 10 n 10 DG 10 B DC 11 n 11 DC 11 B DC 12 n 12 DC 12 B DG 13 n 13 DG 13 B DG 14 n 14 DG 14 B author_defined_assembly 2 dimeric NMR Distance Restraints 1680 -4 5650 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 N Solution structure of a duplex-quadruplex hybrid formed by d[G4C2] repeats 1 N N 1 N N hydrog TYPE_6_PAIR A DG 1 A N1 DG 1 1_555 B DG 2 B O6 DG 2 1_555 hydrog TYPE_6_PAIR A DG 1 A N2 DG 1 1_555 B DG 2 B N7 DG 2 1_555 hydrog TYPE_6_PAIR A DG 1 A N7 DG 1 1_555 B DG 9 B N2 DG 9 1_555 hydrog TYPE_6_PAIR A DG 1 A O6 DG 1 1_555 B DG 9 B N1 DG 9 1_555 hydrog TYPE_6_PAIR A DG 2 A N7 DG 2 1_555 B DG 1 B N2 DG 1 1_555 hydrog TYPE_6_PAIR A DG 2 A O6 DG 2 1_555 B DG 1 B N1 DG 1 1_555 hydrog TYPE_6_PAIR A DG 2 A N1 DG 2 1_555 B DG 10 B O6 DG 10 1_555 hydrog TYPE_6_PAIR A DG 2 A N2 DG 2 1_555 B DG 10 B N7 DG 10 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 14 B N1 DG 14 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 14 B O6 DG 14 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 14 B N2 DG 14 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 13 B N1 DG 13 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 13 B O6 DG 13 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 13 B N2 DG 13 1_555 hydrog WATSON-CRICK A DG 7 A N1 DG 7 1_555 B DC 12 B N3 DC 12 1_555 hydrog WATSON-CRICK A DG 7 A N2 DG 7 1_555 B DC 12 B O2 DC 12 1_555 hydrog WATSON-CRICK A DG 7 A O6 DG 7 1_555 B DC 12 B N4 DC 12 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B DC 11 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B DC 11 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B DC 11 B N4 DC 11 1_555 hydrog TYPE_6_PAIR A DG 9 A N1 DG 9 1_555 B DG 1 B O6 DG 1 1_555 hydrog TYPE_6_PAIR A DG 9 A N2 DG 9 1_555 B DG 1 B N7 DG 1 1_555 hydrog TYPE_6_PAIR A DG 9 A N7 DG 9 1_555 B DG 10 B N2 DG 10 1_555 hydrog TYPE_6_PAIR A DG 9 A O6 DG 9 1_555 B DG 10 B N1 DG 10 1_555 hydrog TYPE_6_PAIR A DG 10 A N7 DG 10 1_555 B DG 2 B N2 DG 2 1_555 hydrog TYPE_6_PAIR A DG 10 A O6 DG 10 1_555 B DG 2 B N1 DG 2 1_555 hydrog TYPE_6_PAIR A DG 10 A N1 DG 10 1_555 B DG 9 B O6 DG 9 1_555 hydrog TYPE_6_PAIR A DG 10 A N2 DG 10 1_555 B DG 9 B N7 DG 9 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 8 B N1 DG 8 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 8 B O6 DG 8 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 8 B N2 DG 8 1_555 hydrog WATSON-CRICK A DC 12 A N3 DC 12 1_555 B DG 7 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 12 A N4 DC 12 1_555 B DG 7 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 12 A O2 DC 12 1_555 B DG 7 B N2 DG 7 1_555 hydrog WATSON-CRICK A DG 13 A N1 DG 13 1_555 B DC 6 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 13 A N2 DG 13 1_555 B DC 6 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 13 A O6 DG 13 1_555 B DC 6 B N4 DC 6 1_555 hydrog WATSON-CRICK A DG 14 A N1 DG 14 1_555 B DC 5 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 14 A N2 DG 14 1_555 B DC 5 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 14 A O6 DG 14 1_555 B DC 5 B N4 DC 5 1_555 DNA Duplex-Quadruplex hybrid, ALS, C9ORF72, HRE, G4C2 repeats, NMR- spectroscopy, DNA, Microsatellite, WT14 7VF1 PDB 1 1 7VF1 1 14 7VF1 1 14 7VF1 A 1 1 14 1 14 7VF1 1 14 7VF1 B 1 1 14