0.012587 0.000000 0.000000 0.000000 0.012587 0.000000 0.000000 0.000000 0.026212 0.00000 0.00000 0.00000 Luo, F. Kang, J. Tono, K. Iwata, S. Nango, E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 79.450 79.450 38.150 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C8 H15 N O6 221.208 2-acetamido-2-deoxy-alpha-D-glucopyranose N-acetyl-alpha-D-glucosamine; 2-acetamido-2-deoxy-alpha-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE D-saccharide, alpha linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N NA N 252 S C N 253 R C N 254 R C N 255 S C N 256 R C N 257 N C N 258 N C N 259 N C N 260 N O N 261 N O N 262 N O N 263 N O N 264 N O N 265 N N N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N N N 283 S C N 284 N C N 285 N O N 286 N C Y 287 N C Y 288 N C Y 289 N C Y 290 N C Y 291 N C Y 292 N C N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C N 327 N O N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 R C N 341 N O N 342 N C N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N N Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N C N 391 N O N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N N N 405 S C N 406 N C N 407 N O N 408 N C N 409 N C N 410 N C N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing Y 278 N doub Y 279 N sing Y 280 N sing N 281 N sing Y 282 N doub N 283 N sing Y 284 N doub N 285 N sing Y 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing Y 347 N doub Y 348 N sing Y 349 N sing N 350 N sing Y 351 N doub Y 352 N sing Y 353 N sing N 354 N sing Y 355 N sing Y 356 N doub N 357 N sing Y 358 N doub N 359 N sing Y 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing Y 375 N doub Y 376 N sing Y 377 N sing N 378 N sing Y 379 N doub N 380 N sing Y 381 N doub N 382 N sing Y 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing US J.Appl.Crystallogr. JACGAR 1600-5767 59 10.1107/S1600576726000063 Compact tape-driven sample delivery system for serial femtosecond crystallography. 2026 10.2210/pdb9v3h/pdb pdb_00009v3h 293 1 Y CCD 2023-04-21 MPCCD SINGLE WAVELENGTH M x-ray 1 1.24 1.0 BL2 SACLA 1.24 FREE ELECTRON LASER SACLA BEAMLINE BL2 14331.160 Lysozyme C 3.2.1.17 1 nat polymer 35.453 CHLORIDE ION 2 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 221.208 2-acetamido-2-deoxy-alpha-D-glucopyranose 1 syn non-polymer 18.015 water 64 nat water 1,4-beta-N-acetylmuramidase C,Allergen Gal d IV no no KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n chicken sample 1 129 9031 Gallus gallus 1 2.10 41.44 BATCH MODE 3.0 8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate 290 repository Initial release 1 0 2026-03-25 Japan Japan Agency for Medical Research and Development (AMED) JP21am0101070 Japan Japan Agency for Medical Research and Development (AMED) JP22ama121001 Japan Ministry of Education, Culture, Sports, Science and Technology (Japan) 24H02262 Japan Ministry of Education, Culture, Sports, Science and Technology (Japan) 24H00547 DGlcpNAca N-acetyl-a-D-glucopyranosamine a-D-GlcpNAc GlcNAc eriko.nango.c4@tohoku.ac.jp 0000-0001-9851-7355 Eriko Nango principal investigator/group leader iwata.so.2z@kyoto-u.ac.jp 0000-0003-1735-2937 So Iwata principal investigator/group leader N PDBJ Y PDBJ 2025-05-21 REL REL NDG NDG SUBJECT OF INVESTIGATION CL CHLORIDE ION NA SODIUM ION NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose HOH water Y Y 6jzi PDB experimental model A CYS 6 Disulfide bridge SG A CYS 6 A CYS 127 SG A CYS 127 1_555 1_555 None A CYS 30 Disulfide bridge SG A CYS 30 A CYS 115 SG A CYS 115 1_555 1_555 None A CYS 64 Disulfide bridge SG A CYS 64 A CYS 80 SG A CYS 80 1_555 1_555 None A CYS 76 Disulfide bridge SG A CYS 76 A CYS 94 SG A CYS 94 1_555 1_555 None CL 204 2 CL CL 201 A CL 205 2 CL CL 202 A NA 206 3 NA NA 203 A NDG 207 4 NDG NDG 204 A HOH 55 5 HOH HOH 301 A HOH 56 5 HOH HOH 302 A HOH 71 5 HOH HOH 303 A HOH 38 5 HOH HOH 304 A HOH 14 5 HOH HOH 305 A HOH 61 5 HOH HOH 306 A HOH 51 5 HOH HOH 307 A HOH 27 5 HOH HOH 308 A HOH 43 5 HOH HOH 309 A HOH 13 5 HOH HOH 310 A HOH 45 5 HOH HOH 311 A HOH 4 5 HOH HOH 312 A HOH 9 5 HOH HOH 313 A HOH 5 5 HOH HOH 314 A HOH 20 5 HOH HOH 315 A HOH 67 5 HOH HOH 316 A HOH 69 5 HOH HOH 317 A HOH 46 5 HOH HOH 318 A HOH 29 5 HOH HOH 319 A HOH 21 5 HOH HOH 320 A HOH 36 5 HOH HOH 321 A HOH 16 5 HOH HOH 322 A HOH 28 5 HOH HOH 323 A HOH 8 5 HOH HOH 324 A HOH 10 5 HOH HOH 325 A HOH 12 5 HOH HOH 326 A HOH 26 5 HOH HOH 327 A HOH 53 5 HOH HOH 328 A HOH 3 5 HOH HOH 329 A HOH 47 5 HOH HOH 330 A HOH 17 5 HOH HOH 331 A HOH 49 5 HOH HOH 332 A HOH 65 5 HOH HOH 333 A HOH 41 5 HOH HOH 334 A HOH 19 5 HOH HOH 335 A HOH 25 5 HOH HOH 336 A HOH 11 5 HOH HOH 337 A HOH 50 5 HOH HOH 338 A HOH 52 5 HOH HOH 339 A HOH 30 5 HOH HOH 340 A HOH 31 5 HOH HOH 341 A HOH 6 5 HOH HOH 342 A HOH 72 5 HOH HOH 343 A HOH 18 5 HOH HOH 344 A HOH 7 5 HOH HOH 345 A HOH 48 5 HOH HOH 346 A HOH 24 5 HOH HOH 347 A HOH 15 5 HOH HOH 348 A HOH 34 5 HOH HOH 349 A HOH 33 5 HOH HOH 350 A HOH 64 5 HOH HOH 351 A HOH 40 5 HOH HOH 352 A HOH 2 5 HOH HOH 353 A HOH 32 5 HOH HOH 354 A HOH 63 5 HOH HOH 355 A HOH 75 5 HOH HOH 356 A HOH 68 5 HOH HOH 357 A HOH 73 5 HOH HOH 358 A HOH 70 5 HOH HOH 359 A HOH 35 5 HOH HOH 360 A HOH 42 5 HOH HOH 361 A HOH 74 5 HOH HOH 362 A HOH 39 5 HOH HOH 363 A HOH 62 5 HOH HOH 364 A LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A PHE 3 n 3 PHE 3 A GLY 4 n 4 GLY 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ALA 10 n 10 ALA 10 A ALA 11 n 11 ALA 11 A MET 12 n 12 MET 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A HIS 15 n 15 HIS 15 A GLY 16 n 16 GLY 16 A LEU 17 n 17 LEU 17 A ASP 18 n 18 ASP 18 A ASN 19 n 19 ASN 19 A TYR 20 n 20 TYR 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A TYR 23 n 23 TYR 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A GLY 26 n 26 GLY 26 A ASN 27 n 27 ASN 27 A TRP 28 n 28 TRP 28 A VAL 29 n 29 VAL 29 A CYS 30 n 30 CYS 30 A ALA 31 n 31 ALA 31 A ALA 32 n 32 ALA 32 A LYS 33 n 33 LYS 33 A PHE 34 n 34 PHE 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A ASN 37 n 37 ASN 37 A PHE 38 n 38 PHE 38 A ASN 39 n 39 ASN 39 A THR 40 n 40 THR 40 A GLN 41 n 41 GLN 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A ARG 45 n 45 ARG 45 A ASN 46 n 46 ASN 46 A THR 47 n 47 THR 47 A ASP 48 n 48 ASP 48 A GLY 49 n 49 GLY 49 A SER 50 n 50 SER 50 A THR 51 n 51 THR 51 A ASP 52 n 52 ASP 52 A TYR 53 n 53 TYR 53 A GLY 54 n 54 GLY 54 A ILE 55 n 55 ILE 55 A LEU 56 n 56 LEU 56 A GLN 57 n 57 GLN 57 A ILE 58 n 58 ILE 58 A ASN 59 n 59 ASN 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A TRP 62 n 62 TRP 62 A TRP 63 n 63 TRP 63 A CYS 64 n 64 CYS 64 A ASN 65 n 65 ASN 65 A ASP 66 n 66 ASP 66 A GLY 67 n 67 GLY 67 A ARG 68 n 68 ARG 68 A THR 69 n 69 THR 69 A PRO 70 n 70 PRO 70 A GLY 71 n 71 GLY 71 A SER 72 n 72 SER 72 A ARG 73 n 73 ARG 73 A ASN 74 n 74 ASN 74 A LEU 75 n 75 LEU 75 A CYS 76 n 76 CYS 76 A ASN 77 n 77 ASN 77 A ILE 78 n 78 ILE 78 A PRO 79 n 79 PRO 79 A CYS 80 n 80 CYS 80 A SER 81 n 81 SER 81 A ALA 82 n 82 ALA 82 A LEU 83 n 83 LEU 83 A LEU 84 n 84 LEU 84 A SER 85 n 85 SER 85 A SER 86 n 86 SER 86 A ASP 87 n 87 ASP 87 A ILE 88 n 88 ILE 88 A THR 89 n 89 THR 89 A ALA 90 n 90 ALA 90 A SER 91 n 91 SER 91 A VAL 92 n 92 VAL 92 A ASN 93 n 93 ASN 93 A CYS 94 n 94 CYS 94 A ALA 95 n 95 ALA 95 A LYS 96 n 96 LYS 96 A LYS 97 n 97 LYS 97 A ILE 98 n 98 ILE 98 A VAL 99 n 99 VAL 99 A SER 100 n 100 SER 100 A ASP 101 n 101 ASP 101 A GLY 102 n 102 GLY 102 A ASN 103 n 103 ASN 103 A GLY 104 n 104 GLY 104 A MET 105 n 105 MET 105 A ASN 106 n 106 ASN 106 A ALA 107 n 107 ALA 107 A TRP 108 n 108 TRP 108 A VAL 109 n 109 VAL 109 A ALA 110 n 110 ALA 110 A TRP 111 n 111 TRP 111 A ARG 112 n 112 ARG 112 A ASN 113 n 113 ASN 113 A ARG 114 n 114 ARG 114 A CYS 115 n 115 CYS 115 A LYS 116 n 116 LYS 116 A GLY 117 n 117 GLY 117 A THR 118 n 118 THR 118 A ASP 119 n 119 ASP 119 A VAL 120 n 120 VAL 120 A GLN 121 n 121 GLN 121 A ALA 122 n 122 ALA 122 A TRP 123 n 123 TRP 123 A ILE 124 n 124 ILE 124 A ARG 125 n 125 ARG 125 A GLY 126 n 126 GLY 126 A CYS 127 n 127 CYS 127 A ARG 128 n 128 ARG 128 A LEU 129 n 129 LEU 129 A injection author_and_software_defined_assembly PISA 1 monomeric none 140 -12 6500 A SER 60 A O SER 60 1_555 A NA 203 D NA NA 1_555 A CYS 64 A O CYS 64 1_555 86.8 A SER 60 A O SER 60 1_555 A NA 203 D NA NA 1_555 A SER 72 A OG SER 72 1_555 85.1 A CYS 64 A O CYS 64 1_555 A NA 203 D NA NA 1_555 A SER 72 A OG SER 72 1_555 159.8 A SER 60 A O SER 60 1_555 A NA 203 D NA NA 1_555 A ARG 73 A O ARG 73 1_555 94.7 A CYS 64 A O CYS 64 1_555 A NA 203 D NA NA 1_555 A ARG 73 A O ARG 73 1_555 92.4 A SER 72 A OG SER 72 1_555 A NA 203 D NA NA 1_555 A ARG 73 A O ARG 73 1_555 106.7 A SER 60 A O SER 60 1_555 A NA 203 D NA NA 1_555 A HOH 340 F O HOH 1_555 172.2 A CYS 64 A O CYS 64 1_555 A NA 203 D NA NA 1_555 A HOH 340 F O HOH 1_555 99.8 A SER 72 A OG SER 72 1_555 A NA 203 D NA NA 1_555 A HOH 340 F O HOH 1_555 87.3 A ARG 73 A O ARG 73 1_555 A NA 203 D NA NA 1_555 A HOH 340 F O HOH 1_555 89.2 A SER 60 A O SER 60 1_555 A NA 203 D NA NA 1_555 A HOH 342 F O HOH 1_555 95.6 A CYS 64 A O CYS 64 1_555 A NA 203 D NA NA 1_555 A HOH 342 F O HOH 1_555 86.3 A SER 72 A OG SER 72 1_555 A NA 203 D NA NA 1_555 A HOH 342 F O HOH 1_555 76.1 A ARG 73 A O ARG 73 1_555 A NA 203 D NA NA 1_555 A HOH 342 F O HOH 1_555 169.5 A HOH 340 F O HOH 1_555 A NA 203 D NA NA 1_555 A HOH 342 F O HOH 1_555 80.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASN 44 A N ASN 44 A O ASP 52 A O ASP 52 A N TYR 53 A N TYR 53 A O ILE 58 A O ILE 58 1 A HOH 328 F HOH 1 A HOH 331 F HOH 1 A CD LYS 97 A CD LYS 97 1 Y 1 A CE LYS 97 A CE LYS 97 1 Y 1 A NZ LYS 97 A NZ LYS 97 1 Y 1 A A O O HOH HOH 363 364 2.07 1 A A O O HOH HOH 348 358 2.12 1 A A O O HOH HOH 334 353 2.17 1 A ARG 68 A -143.46 20.87 1 A ARG 68 B -140.69 22.81 0.2272 0.1978 0.1993 1.68 35.53 722 14445 5.00 99.98 0.29 1 FREE R-VALUE 1.37 MOLECULAR REPLACEMENT 22.58 0.90 1.11 ML FLAT BULK SOLVENT MODEL 1.68 35.53 64 1080 18 0 998 0.006 1063 0.978 1443 9.512 161 0.059 152 0.008 190 0.4438 0.4104 1.81 141 2687 100.00 0.2273 0.1884 1.99 141 2680 100.00 0.2340 0.2001 2.28 143 2716 100.00 0.2154 0.1852 2.87 144 2743 100.00 0.2082 0.1834 35.53 153 2897 100.00 1.68 39.68 9V3H 14489 0.962 1 6.48 162.6 100 1.68 1.70 702 0.5975 1 refinement PHENIX (1.19.2_4158: ???) data scaling CrystFEL data reduction CrystFEL phasing PHASER data extraction PDB_EXTRACT N Time-Resolved mixing crystallography structure of 3-5 micrometers Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 2 seconds delay 1 N N 2 N N 2 N N 3 N N 4 N N 5 N N A GLY 4 A GLY 4 HELX_P A HIS 15 A HIS 15 1 AA1 12 A ASN 19 A ASN 19 HELX_P A TYR 23 A TYR 23 5 AA2 5 A SER 24 A SER 24 HELX_P A ASN 37 A ASN 37 1 AA3 14 A PRO 79 A PRO 79 HELX_P A SER 85 A SER 85 5 AA4 7 A ILE 88 A ILE 88 HELX_P A SER 100 A SER 100 1 AA5 13 A ASN 103 A ASN 103 HELX_P A ALA 107 A ALA 107 5 AA6 5 A TRP 108 A TRP 108 HELX_P A CYS 115 A CYS 115 1 AA7 8 A ASP 119 A ASP 119 HELX_P A ARG 125 A ARG 125 5 AA8 7 disulf 2.008 A CYS 6 A SG CYS 6 1_555 A CYS 127 A SG CYS 127 1_555 disulf 2.047 A CYS 30 A SG CYS 30 1_555 A CYS 115 A SG CYS 115 1_555 disulf 2.060 A CYS 64 A SG CYS 64 1_555 A CYS 80 A SG CYS 80 1_555 disulf 2.043 A CYS 76 A SG CYS 76 1_555 A CYS 94 A SG CYS 94 1_555 metalc 2.357 A SER 60 A O SER 60 1_555 A NA 203 D NA NA 1_555 metalc 2.409 A CYS 64 A O CYS 64 1_555 A NA 203 D NA NA 1_555 metalc 2.637 A SER 72 A OG SER 72 1_555 A NA 203 D NA NA 1_555 metalc 2.523 A ARG 73 A O ARG 73 1_555 A NA 203 D NA NA 1_555 metalc 2.433 A NA 203 D NA NA 1_555 A HOH 340 F O HOH 1_555 metalc 2.491 A NA 203 D NA NA 1_555 A HOH 342 F O HOH 1_555 HYDROLASE Time-resolved XFEL SFX, Lysozyme, HYDROLASE LYSC_CHICK UNP 1 19 P00698 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 19 147 9V3H 1 129 P00698 A 1 1 129 3 anti-parallel anti-parallel A THR 43 A THR 43 A ARG 45 A ARG 45 A THR 51 A THR 51 A TYR 53 A TYR 53 A ILE 58 A ILE 58 A ASN 59 A ASN 59 96 P 43 21 2