1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0001-5389-3859 Yang, B. 0009-0001-4238-5303 Wang, Q. 0009-0008-9066-9061 Sun, S.W. 0000-0002-2147-5959 Zhang, X. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 90.00 90.00 90.00 1.00 1.00 1.00 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 R C N 148 N C N 149 N O N 150 N C N 151 N S N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N O N 161 N P N 162 N O N 163 N O N 164 N O N 165 N C N 166 R C N 167 N O N 168 S C N 169 N O N 170 R C N 171 N O N 172 R C Y 173 N N Y 174 N C Y 175 N N Y 176 N C N 177 N C N 178 N O N 179 N N N 180 N C N 181 N N N 182 N N Y 183 N C N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N O N 206 N N N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N C N 224 N C N 225 N O N 226 N O N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 N C N 239 N C N 240 N O N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N N Y 254 N C Y 255 N C Y 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 S C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N N N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C N 342 N C N 343 N S N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C N 385 N C N 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C N 402 N O N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 R C N 416 N O N 417 N C N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N N Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N N N 456 S C N 457 N C N 458 N O N 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C Y 465 N C N 466 N O N 467 N O N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N O N 480 N P N 481 N O N 482 N O N 483 N O N 484 N C N 485 R C N 486 N O N 487 S C N 488 N O N 489 R C N 490 N O N 491 R C N 492 N N N 493 N C N 494 N O N 495 N N N 496 N C N 497 N O N 498 N C N 499 N C N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N N N 514 S C N 515 N C N 516 N O N 517 N C N 518 N C N 519 N C N 520 N O N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing Y 182 N sing Y 183 N sing Y 184 N doub N 185 N sing Y 186 N sing N 187 N sing Y 188 N doub N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N sing Y 256 N doub Y 257 N doub N 258 N sing Y 259 N sing N 260 N sing Y 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub N 366 N sing Y 367 N doub N 368 N sing Y 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N doub N 426 N sing N 427 N sing N 428 N sing N 429 N sing Y 430 N doub Y 431 N sing Y 432 N sing N 433 N sing Y 434 N doub Y 435 N sing Y 436 N sing N 437 N sing Y 438 N sing Y 439 N doub N 440 N sing Y 441 N doub N 442 N sing Y 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N doub N 454 N sing N 455 N sing N 456 N sing N 457 N sing Y 458 N doub Y 459 N sing Y 460 N sing N 461 N sing Y 462 N doub N 463 N sing Y 464 N doub N 465 N sing Y 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N doub N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N doub N 498 N sing N 499 N sing N 500 N sing N 501 N doub N 502 N sing N 503 N doub N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N doub N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing To Be Published 0353 HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1 splitRNA 0000-0001-5389-3859 0009-0001-4238-5303 0009-0008-9066-9061 0000-0002-2147-5959 10.2210/pdb9urm/pdb pdb_00009urm FLEXIBLE FIT 6KYZ 1 6KYZ PDB experimental model 9URM 113246 4.24 FSC 0.143 CUT-OFF POINT REL 2025-04-30 PDBJ 2026-05-06 2026-05-06 HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1 splitRNA 8.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 1, 2, 3, 4 C1-3C-YDF-splitRNA 0 MULTIPLE SOURCES COMPLEX NO 12131 rhinovirus B14 511693 Escherichia coli BL21 PARTICLE 1 1 SINGLE PARTICLE 60.0 FEI FALCON IV (4k x 4k) 300 FIELD EMISSION GUN FLOOD BEAM TFS KRIOS BRIGHT FIELD 2.7 1500 500 1 COPPER 300 Quantifoil R1.2/1.3 PARTICLE SELECTION 1 cryoSPARC 4.6.2 IMAGE ACQUISITION 1 MASKING CTF CORRECTION 1 cryoSPARC 4.6.2 LAYERLINE INDEXING DIFFRACTION INDEXING MODEL FITTING 1 OTHER MODEL REFINEMENT 1 PHENIX 1.20.1_4487 INITIAL EULER ASSIGNMENT 1 FINAL EULER ASSIGNMENT 1 cryoSPARC 4.6.2 CLASSIFICATION 1 RECONSTRUCTION 1 cryoSPARC 4.6.2 VOLUME SELECTION 1 1 1 SERIES ALIGNMENT 1 1 1 MOLECULAR REPLACEMENT 1 1 1 LATTICE DISTORTION CORRECTION 1 1 1 SYMMETRY DETERMINATION 1 1 1 CRYSTALLOGRAPHY MERGING 1 1 1 NO NO NO YES 281.15 ETHANE 9URM 100 19836.695 Protease 3C 3.4.22.28 1 man polymer 13833.439 YDF H chain 1 man polymer 11129.237 YDF L chain 1 man polymer 26533.643 RNA (83-MER) 1 syn polymer Picornain 3C,P3C no no PNTEFALSLLRKNIMTITTSKGEFTGLGIHDRVCVIPTHAQPGDDVLVNGQKIRVKDKYKLVDPENINLELTVLTLDRNE KFRDIRGFISEDLEGVDATLVVHSNNFTNTILEVGPVTMAGLINLSSTPTNRMIRYDYATKTGQCGGVLCATGKIFGIHV GGNGRQGFSAQLKKQYFVEK PNTEFALSLLRKNIMTITTSKGEFTGLGIHDRVCVIPTHAQPGDDVLVNGQKIRVKDKYKLVDPENINLELTVLTLDRNE KFRDIRGFISEDLEGVDATLVVHSNNFTNTILEVGPVTMAGLINLSSTPTNRMIRYDYATKTGQCGGVLCATGKIFGIHV GGNGRQGFSAQLKKQYFVEK A polypeptide(L) no no QVQLLQSGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY LQMNSLRAEDTAVYYCARVGKGGYDFWSGSGYMDVWGKGTTVTVSSG QVQLLQSGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY LQMNSLRAEDTAVYYCARVGKGGYDFWSGSGYMDVWGKGTTVTVSSG B polypeptide(L) no no SYVLTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAM DEADYYCQAWDSSTVVFGGGTKLTV SYVLTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAM DEADYYCQAWDSSTVVFGGGTKLTV C polypeptide(L) no no GGGAAACAGCGGAUGGGUAUCCCACCAUUCGACCCAUUGGGUGUAGUACUCUGGUACUAUGUACCUUUGUACGCCUGUUU CCC GGGAAACAGCGGAUGGGUAUCCCACCAUUCGACCCAUUGGGUGUAGUACUCUGGUACUAUGUACCUUUGUACGCCUGUUU CCC R polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 180 12131 rhinovirus B14 511693 Escherichia coli BL21 Biological sequence sample 1 127 9606 Homo sapiens 511693 Escherichia coli BL21 Biological sequence sample 1 105 9606 Homo sapiens 511693 Escherichia coli BL21 Biological sequence -1.363 1 19 R 1 R 83 0.927 R_G1:C83_R 1 -1.796 -0.182 -0.764 -0.219 -1.727 1 19 R 2 R 82 0.022 R_G2:C82_R 2 -1.068 -0.182 -0.671 -0.199 -2.896 1 19 R 3 R 81 -1.048 R_G3:C81_R 3 -2.974 -0.228 -0.401 -0.260 0.846 1 20 R 4 R 80 -0.419 R_A4:U80_R 4 -0.398 0.046 -0.344 -0.102 -0.568 1 20 R 5 R 79 0.036 R_A5:U79_R 5 -4.190 0.051 -0.566 -0.133 0.606 1 20 R 6 R 78 -0.607 R_A6:U78_R 6 -3.776 0.056 -0.233 -0.098 3.550 1 19 R 7 R 77 -0.617 R_C7:G77_R 7 -6.297 0.721 0.029 -0.105 -1.880 1 19 R 26 R 15 0.760 R_C26:G15_R 8 1.667 0.148 0.957 -0.340 -1.296 1 20 R 27 R 14 -1.991 R_A27:U14_R 9 -1.614 0.086 -0.365 -0.145 1.613 1 20 R 28 R 13 -3.116 R_U28:A13_R 10 -3.556 0.651 -0.553 -0.467 -2.451 1 28 R 29 R 12 -3.606 R_U29:G12_R 11 -3.326 1.216 -0.014 -0.549 9.645 1 19 R 30 R 11 5.550 R_C30:G11_R 12 -4.368 1.029 -0.722 -0.489 9.763 1 R 31 R 10 23.786 R_G31:C10_R 13 -7.682 -2.214 0.925 -0.122 -0.011 1 20 R 32 R 42 -10.122 R_A32:U42_R 14 6.925 0.036 -0.739 -0.380 7.615 1 19 R 33 R 41 1.724 R_C33:G41_R 15 -6.211 0.208 -0.722 -0.180 3.041 1 19 R 34 R 40 0.725 R_C34:G40_R 16 -2.768 0.182 -0.507 -0.160 1.802 1 19 R 35 R 39 0.507 R_C35:G39_R 17 0.437 0.203 -0.058 -0.141 -24.553 R 43 R 74 -20.975 R_G43:C74_R 18 -36.811 1.930 -0.924 1.014 -10.740 1 8 R 45 R 73 -0.933 R_A45:G73_R 19 -9.992 -1.152 0.293 1.404 -11.616 1 R 46 R 72 -7.348 R_G46:C72_R 20 -9.139 0.025 -0.874 0.494 0.697 R 47 R 71 3.120 R_U47:A71_R 21 -1.566 -0.012 0.191 0.684 0.088 1 20 R 48 R 70 -1.270 R_A48:U70_R 22 -1.914 0.073 0.140 -0.012 4.225 1 19 R 49 R 69 1.026 R_C49:G69_R 23 -3.153 0.163 0.505 -0.142 -3.585 R 51 R 67 22.412 R_C51:U67_R 24 -13.416 0.081 -0.347 -0.859 -10.792 1 19 R 53 R 65 1.267 R_G53:C65_R 25 -7.286 -0.238 -0.736 -0.146 -8.160 1 19 R 54 R 64 -0.914 R_G54:C64_R 26 -6.927 -0.207 -0.435 -0.146 -4.131 1 20 R 55 R 63 -0.271 R_U55:A63_R 27 -6.374 -0.043 -0.111 -0.019 -4.105 1 20 R 56 R 62 -1.318 R_A56:U62_R 28 -7.701 0.018 0.028 -0.050 2.135 1 19 R 57 R 61 -1.133 R_C57:G61_R 29 -3.721 0.121 0.370 -0.143 3.585 31.498 R R 1 2 2.049 R R 83 82 3.625 1.111 -0.278 -1.378 RR_G1G2:C82C83_RR 1 -2.106 3.884 31.410 -2.767 0.079 3.303 32.130 R R 2 3 2.994 R R 82 81 3.372 1.653 -0.221 -1.374 RR_G2G3:C81C82_RR 2 -3.645 6.601 31.886 -2.785 -0.269 3.201 34.437 R R 3 4 0.335 R R 81 80 3.206 0.198 -0.166 -1.272 RR_G3A4:U80C81_RR 3 -3.099 5.241 34.301 -2.178 -0.193 3.166 34.642 R R 4 5 4.714 R R 80 79 3.268 2.804 -0.398 -1.299 RR_A4A5:U79U80_RR 4 -0.980 1.647 34.518 -2.606 0.521 2.700 32.779 R R 5 6 11.695 R R 79 78 3.048 6.538 0.047 -1.313 RR_A5A6:U78U79_RR 5 -4.483 8.019 31.832 -3.331 -0.771 3.262 37.952 R R 6 7 -5.035 R R 78 77 3.159 -3.269 0.216 -1.564 RR_A6C7:G77U78_RR 6 -2.064 3.180 37.762 -1.994 -0.591 3.542 36.338 R R 26 27 -12.890 R R 15 14 3.412 -7.878 0.031 -1.553 RR_C26A27:U14G15_RR 7 10.064 -16.467 34.087 -1.281 1.495 3.225 39.433 R R 27 28 1.783 R R 14 13 3.264 1.201 0.291 -1.715 RR_A27U28:A13U14_RR 8 4.351 -6.461 39.184 -2.683 0.080 3.452 40.446 R R 28 29 -0.114 R R 13 12 3.455 -0.079 0.774 -1.631 RR_U28U29:G12A13_RR 9 -0.301 0.435 40.445 -2.349 -1.155 2.449 29.481 R R 29 30 11.211 R R 12 11 2.832 5.630 0.070 -1.527 RR_U29C30:G11G12_RR 10 6.188 -12.323 28.295 -3.992 0.950 1.708 21.624 R R 30 31 12.512 R R 11 10 3.052 4.522 1.497 -1.955 RR_C30G31:C10G11_RR 11 -8.834 24.442 19.237 -6.600 -6.705 3.559 56.520 R R 31 32 -4.938 R R 10 42 3.543 -4.666 -0.828 -1.398 RR_G31A32:U42C10_RR 12 5.055 -5.349 56.134 -1.191 1.184 3.326 31.421 R R 32 33 7.118 R R 42 41 3.420 3.842 1.027 -1.160 RR_A32C33:G41U42_RR 13 2.481 -4.597 31.095 -2.888 -1.414 2.744 34.836 R R 33 34 17.121 R R 41 40 3.339 10.111 -0.073 -1.626 RR_C33C34:G40G41_RR 14 0.410 -0.694 33.377 -4.178 0.181 2.684 30.363 R R 34 35 17.706 R R 40 39 3.367 9.135 0.119 -1.820 RR_C34C35:G39G40_RR 15 1.056 -2.046 28.969 -5.215 -0.026 2.487 38.160 R R 43 45 12.293 R R 74 73 3.840 7.814 -0.899 -3.637 RR_G43A45:G73C74_RR 16 13.654 -21.480 34.877 -6.565 3.125 2.685 33.985 R R 45 46 18.934 R R 73 72 3.349 10.875 -0.554 -1.455 RR_A45G46:C72G73_RR 17 2.300 -4.004 32.167 -4.140 1.297 3.259 32.292 R R 46 47 -3.569 R R 72 71 3.316 -1.963 0.119 -1.425 RR_G46U47:A71C72_RR 18 -8.293 15.079 31.176 -2.205 -1.720 2.192 35.319 R R 47 48 28.228 R R 71 70 3.248 16.498 -0.272 -1.530 RR_U47A48:U70A71_RR 19 0.438 -0.750 31.335 -4.681 0.506 3.046 29.785 R R 48 49 7.927 R R 70 69 3.316 4.055 0.209 -1.524 RR_A48C49:G69U70_RR 20 -3.043 5.949 29.359 -3.795 -1.029 5.514 68.618 R R 49 51 17.458 R R 69 67 6.497 19.469 0.333 -3.030 RR_C49C51:U67G69_RR 21 -2.194 1.968 66.092 -4.050 -0.449 2.844 27.692 R R 53 54 19.081 R R 65 64 3.584 8.969 0.047 -1.715 RR_G53G54:C64C65_RR 22 -1.536 3.267 26.182 -5.778 -0.475 2.767 34.264 R R 54 55 23.252 R R 64 63 3.417 13.321 -0.481 -1.126 RR_G54U55:A63C64_RR 23 -4.281 7.473 31.355 -3.986 0.150 3.087 31.753 R R 55 56 11.911 R R 63 62 3.465 6.454 0.022 -1.384 RR_U55A56:U62A63_RR 24 -4.380 8.084 30.805 -3.735 -0.858 3.414 30.480 R R 56 57 -0.605 R R 62 61 3.404 -0.317 -0.095 -1.665 RR_A56C57:G61U62_RR 25 -3.116 5.937 30.322 -3.101 -0.468 repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release 1 0 2026-05-06 1 0 2026-05-06 1 0 2026-05-06 1 0 1 2026-05-06 1 0 2 2026-05-06 1 0 2026-05-06 1 0 2026-05-06 China National Natural Science Foundation of China (NSFC) 32070170 China National Natural Science Foundation of China (NSFC) 32371272 China National Natural Science Foundation of China (NSFC) 23ZR1442500 yangbei@shanghaitech.edu.cn 0000-0002-2147-5959 Bei Yang principal investigator/group leader HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1 splitRNA N PDBJ Y PDBC 2025-04-30 REL 12131 rhinovirus B14 sample 1 83 N 6KYZ PDB experimental model PRO 2 n 1 PRO 2 A ASN 3 n 2 ASN 3 A THR 4 n 3 THR 4 A GLU 5 n 4 GLU 5 A PHE 6 n 5 PHE 6 A ALA 7 n 6 ALA 7 A LEU 8 n 7 LEU 8 A SER 9 n 8 SER 9 A LEU 10 n 9 LEU 10 A LEU 11 n 10 LEU 11 A ARG 12 n 11 ARG 12 A LYS 13 n 12 LYS 13 A ASN 14 n 13 ASN 14 A ILE 15 n 14 ILE 15 A MET 16 n 15 MET 16 A THR 17 n 16 THR 17 A ILE 18 n 17 ILE 18 A THR 19 n 18 THR 19 A THR 20 n 19 THR 20 A SER 21 n 20 SER 21 A LYS 22 n 21 LYS 22 A GLY 23 n 22 GLY 23 A GLU 24 n 23 GLU 24 A PHE 25 n 24 PHE 25 A THR 26 n 25 THR 26 A GLY 27 n 26 GLY 27 A LEU 28 n 27 LEU 28 A GLY 29 n 28 GLY 29 A ILE 30 n 29 ILE 30 A HIS 31 n 30 HIS 31 A ASP 32 n 31 ASP 32 A ARG 33 n 32 ARG 33 A VAL 34 n 33 VAL 34 A CYS 35 n 34 CYS 35 A VAL 36 n 35 VAL 36 A ILE 37 n 36 ILE 37 A PRO 38 n 37 PRO 38 A THR 39 n 38 THR 39 A HIS 40 n 39 HIS 40 A ALA 41 n 40 ALA 41 A GLN 42 n 41 GLN 42 A PRO 43 n 42 PRO 43 A GLY 44 n 43 GLY 44 A ASP 45 n 44 ASP 45 A ASP 46 n 45 ASP 46 A VAL 47 n 46 VAL 47 A LEU 48 n 47 LEU 48 A VAL 49 n 48 VAL 49 A ASN 50 n 49 ASN 50 A GLY 51 n 50 GLY 51 A GLN 52 n 51 GLN 52 A LYS 53 n 52 LYS 53 A ILE 54 n 53 ILE 54 A ARG 55 n 54 ARG 55 A VAL 56 n 55 VAL 56 A LYS 57 n 56 LYS 57 A ASP 58 n 57 ASP 58 A LYS 59 n 58 LYS 59 A TYR 60 n 59 TYR 60 A LYS 61 n 60 LYS 61 A LEU 62 n 61 LEU 62 A VAL 63 n 62 VAL 63 A ASP 64 n 63 ASP 64 A PRO 65 n 64 PRO 65 A GLU 66 n 65 GLU 66 A ASN 67 n 66 ASN 67 A ILE 68 n 67 ILE 68 A ASN 69 n 68 ASN 69 A LEU 70 n 69 LEU 70 A GLU 71 n 70 GLU 71 A LEU 72 n 71 LEU 72 A THR 73 n 72 THR 73 A VAL 74 n 73 VAL 74 A LEU 75 n 74 LEU 75 A THR 76 n 75 THR 76 A LEU 77 n 76 LEU 77 A ASP 78 n 77 ASP 78 A ARG 79 n 78 ARG 79 A ASN 80 n 79 ASN 80 A GLU 81 n 80 GLU 81 A LYS 82 n 81 LYS 82 A PHE 83 n 82 PHE 83 A ARG 84 n 83 ARG 84 A ASP 85 n 84 ASP 85 A ILE 86 n 85 ILE 86 A ARG 87 n 86 ARG 87 A GLY 88 n 87 GLY 88 A PHE 89 n 88 PHE 89 A ILE 90 n 89 ILE 90 A SER 91 n 90 SER 91 A GLU 92 n 91 GLU 92 A ASP 93 n 92 ASP 93 A LEU 94 n 93 LEU 94 A GLU 95 n 94 GLU 95 A GLY 96 n 95 GLY 96 A VAL 97 n 96 VAL 97 A ASP 98 n 97 ASP 98 A ALA 99 n 98 ALA 99 A THR 100 n 99 THR 100 A LEU 101 n 100 LEU 101 A VAL 102 n 101 VAL 102 A VAL 103 n 102 VAL 103 A HIS 104 n 103 HIS 104 A SER 105 n 104 SER 105 A ASN 106 n 105 ASN 106 A ASN 107 n 106 ASN 107 A PHE 108 n 107 PHE 108 A THR 109 n 108 THR 109 A ASN 110 n 109 ASN 110 A THR 111 n 110 THR 111 A ILE 112 n 111 ILE 112 A LEU 113 n 112 LEU 113 A GLU 114 n 113 GLU 114 A VAL 115 n 114 VAL 115 A GLY 116 n 115 GLY 116 A PRO 117 n 116 PRO 117 A VAL 118 n 117 VAL 118 A THR 119 n 118 THR 119 A MET 120 n 119 MET 120 A ALA 121 n 120 ALA 121 A GLY 122 n 121 GLY 122 A LEU 123 n 122 LEU 123 A ILE 124 n 123 ILE 124 A ASN 125 n 124 ASN 125 A LEU 126 n 125 LEU 126 A SER 127 n 126 SER 127 A SER 128 n 127 SER 128 A THR 129 n 128 THR 129 A PRO 130 n 129 PRO 130 A THR 131 n 130 THR 131 A ASN 132 n 131 ASN 132 A ARG 133 n 132 ARG 133 A MET 134 n 133 MET 134 A ILE 135 n 134 ILE 135 A ARG 136 n 135 ARG 136 A TYR 137 n 136 TYR 137 A ASP 138 n 137 ASP 138 A TYR 139 n 138 TYR 139 A ALA 140 n 139 ALA 140 A THR 141 n 140 THR 141 A LYS 142 n 141 LYS 142 A THR 143 n 142 THR 143 A GLY 144 n 143 GLY 144 A GLN 145 n 144 GLN 145 A CYS 146 n 145 CYS 146 A GLY 147 n 146 GLY 147 A GLY 148 n 147 GLY 148 A VAL 149 n 148 VAL 149 A LEU 150 n 149 LEU 150 A CYS 151 n 150 CYS 151 A ALA 152 n 151 ALA 152 A THR 153 n 152 THR 153 A GLY 154 n 153 GLY 154 A LYS 155 n 154 LYS 155 A ILE 156 n 155 ILE 156 A PHE 157 n 156 PHE 157 A GLY 158 n 157 GLY 158 A ILE 159 n 158 ILE 159 A HIS 160 n 159 HIS 160 A VAL 161 n 160 VAL 161 A GLY 162 n 161 GLY 162 A GLY 163 n 162 GLY 163 A ASN 164 n 163 ASN 164 A GLY 165 n 164 GLY 165 A ARG 166 n 165 ARG 166 A GLN 167 n 166 GLN 167 A GLY 168 n 167 GLY 168 A PHE 169 n 168 PHE 169 A SER 170 n 169 SER 170 A ALA 171 n 170 ALA 171 A GLN 172 n 171 GLN 172 A LEU 173 n 172 LEU 173 A LYS 174 n 173 LYS 174 A LYS 175 n 174 LYS 175 A GLN 176 n 175 GLN 176 A TYR 177 n 176 TYR 177 A PHE 178 n 177 PHE 178 A VAL 179 n 178 VAL 179 A GLU 180 n 179 GLU 180 A n 180 181 A GLN 3 n 1 GLN 3 B VAL 4 n 2 VAL 4 B GLN 5 n 3 GLN 5 B LEU 6 n 4 LEU 6 B LEU 7 n 5 LEU 7 B GLN 8 n 6 GLN 8 B SER 9 n 7 SER 9 B GLY 10 n 8 GLY 10 B GLY 11 n 9 GLY 11 B GLY 12 n 10 GLY 12 B VAL 13 n 11 VAL 13 B VAL 14 n 12 VAL 14 B GLN 15 n 13 GLN 15 B PRO 16 n 14 PRO 16 B GLY 17 n 15 GLY 17 B ARG 18 n 16 ARG 18 B SER 19 n 17 SER 19 B LEU 20 n 18 LEU 20 B ARG 21 n 19 ARG 21 B LEU 22 n 20 LEU 22 B SER 23 n 21 SER 23 B CYS 24 n 22 CYS 24 B ALA 25 n 23 ALA 25 B ALA 26 n 24 ALA 26 B SER 27 n 25 SER 27 B GLY 28 n 26 GLY 28 B PHE 29 n 27 PHE 29 B THR 30 n 28 THR 30 B PHE 31 n 29 PHE 31 B SER 32 n 30 SER 32 B SER 33 n 31 SER 33 B TYR 34 n 32 TYR 34 B ALA 35 n 33 ALA 35 B MET 36 n 34 MET 36 B HIS 37 n 35 HIS 37 B TRP 38 n 36 TRP 38 B VAL 39 n 37 VAL 39 B ARG 40 n 38 ARG 40 B GLN 41 n 39 GLN 41 B ALA 42 n 40 ALA 42 B PRO 43 n 41 PRO 43 B GLY 44 n 42 GLY 44 B LYS 45 n 43 LYS 45 B GLY 46 n 44 GLY 46 B LEU 47 n 45 LEU 47 B GLU 48 n 46 GLU 48 B TRP 49 n 47 TRP 49 B VAL 50 n 48 VAL 50 B ALA 51 n 49 ALA 51 B VAL 52 n 50 VAL 52 B ILE 53 n 51 ILE 53 B SER 54 n 52 SER 54 B TYR 55 n 53 TYR 55 B ASP 56 n 54 ASP 56 B GLY 57 n 55 GLY 57 B SER 58 n 56 SER 58 B ASN 59 n 57 ASN 59 B LYS 60 n 58 LYS 60 B TYR 61 n 59 TYR 61 B TYR 62 n 60 TYR 62 B ALA 63 n 61 ALA 63 B ASP 64 n 62 ASP 64 B SER 65 n 63 SER 65 B VAL 66 n 64 VAL 66 B LYS 67 n 65 LYS 67 B GLY 68 n 66 GLY 68 B ARG 69 n 67 ARG 69 B PHE 70 n 68 PHE 70 B THR 71 n 69 THR 71 B ILE 72 n 70 ILE 72 B SER 73 n 71 SER 73 B ARG 74 n 72 ARG 74 B ASP 75 n 73 ASP 75 B ASN 76 n 74 ASN 76 B SER 77 n 75 SER 77 B LYS 78 n 76 LYS 78 B ASN 79 n 77 ASN 79 B THR 80 n 78 THR 80 B LEU 81 n 79 LEU 81 B TYR 82 n 80 TYR 82 B LEU 83 n 81 LEU 83 B GLN 84 n 82 GLN 84 B MET 85 n 83 MET 85 B ASN 86 n 84 ASN 86 B SER 87 n 85 SER 87 B LEU 88 n 86 LEU 88 B ARG 89 n 87 ARG 89 B ALA 90 n 88 ALA 90 B GLU 91 n 89 GLU 91 B ASP 92 n 90 ASP 92 B THR 93 n 91 THR 93 B ALA 94 n 92 ALA 94 B VAL 95 n 93 VAL 95 B TYR 96 n 94 TYR 96 B TYR 97 n 95 TYR 97 B CYS 98 n 96 CYS 98 B ALA 99 n 97 ALA 99 B ARG 100 n 98 ARG 100 B VAL 101 n 99 VAL 101 B GLY 102 n 100 GLY 102 B LYS 103 n 101 LYS 103 B GLY 104 n 102 GLY 104 B GLY 105 n 103 GLY 105 B TYR 106 n 104 TYR 106 B ASP 107 n 105 ASP 107 B PHE 108 n 106 PHE 108 B TRP 109 n 107 TRP 109 B SER 110 n 108 SER 110 B GLY 111 n 109 GLY 111 B SER 112 n 110 SER 112 B GLY 113 n 111 GLY 113 B TYR 114 n 112 TYR 114 B MET 115 n 113 MET 115 B ASP 116 n 114 ASP 116 B VAL 117 n 115 VAL 117 B TRP 118 n 116 TRP 118 B GLY 119 n 117 GLY 119 B LYS 120 n 118 LYS 120 B GLY 121 n 119 GLY 121 B THR 122 n 120 THR 122 B THR 123 n 121 THR 123 B VAL 124 n 122 VAL 124 B THR 125 n 123 THR 125 B VAL 126 n 124 VAL 126 B SER 127 n 125 SER 127 B SER 128 n 126 SER 128 B GLY 129 n 127 GLY 129 B SER 1 n 1 SER 1 C TYR 2 n 2 TYR 2 C VAL 3 n 3 VAL 3 C LEU 4 n 4 LEU 4 C THR 5 n 5 THR 5 C GLN 6 n 6 GLN 6 C PRO 7 n 7 PRO 7 C PRO 8 n 8 PRO 8 C SER 9 n 9 SER 9 C VAL 10 n 10 VAL 10 C SER 11 n 11 SER 11 C VAL 12 n 12 VAL 12 C SER 13 n 13 SER 13 C PRO 14 n 14 PRO 14 C GLY 15 n 15 GLY 15 C GLN 16 n 16 GLN 16 C THR 17 n 17 THR 17 C ALA 18 n 18 ALA 18 C SER 19 n 19 SER 19 C ILE 20 n 20 ILE 20 C THR 21 n 21 THR 21 C CYS 22 n 22 CYS 22 C SER 23 n 23 SER 23 C GLY 24 n 24 GLY 24 C ASP 25 n 25 ASP 25 C LYS 26 n 26 LYS 26 C LEU 27 n 27 LEU 27 C GLY 28 n 28 GLY 28 C ASP 29 n 29 ASP 29 C LYS 30 n 30 LYS 30 C TYR 31 n 31 TYR 31 C ALA 32 n 32 ALA 32 C CYS 33 n 33 CYS 33 C TRP 34 n 34 TRP 34 C TYR 35 n 35 TYR 35 C GLN 36 n 36 GLN 36 C GLN 37 n 37 GLN 37 C LYS 38 n 38 LYS 38 C PRO 39 n 39 PRO 39 C GLY 40 n 40 GLY 40 C GLN 41 n 41 GLN 41 C SER 42 n 42 SER 42 C PRO 43 n 43 PRO 43 C VAL 44 n 44 VAL 44 C LEU 45 n 45 LEU 45 C VAL 46 n 46 VAL 46 C ILE 47 n 47 ILE 47 C TYR 48 n 48 TYR 48 C GLN 49 n 49 GLN 49 C ASP 50 n 50 ASP 50 C SER 51 n 51 SER 51 C LYS 52 n 52 LYS 52 C ARG 53 n 53 ARG 53 C PRO 54 n 54 PRO 54 C SER 55 n 55 SER 55 C GLY 56 n 56 GLY 56 C ILE 57 n 57 ILE 57 C PRO 58 n 58 PRO 58 C GLU 59 n 59 GLU 59 C ARG 60 n 60 ARG 60 C PHE 61 n 61 PHE 61 C SER 62 n 62 SER 62 C GLY 63 n 63 GLY 63 C SER 64 n 64 SER 64 C ASN 65 n 65 ASN 65 C SER 66 n 66 SER 66 C GLY 67 n 67 GLY 67 C ASN 68 n 68 ASN 68 C THR 69 n 69 THR 69 C ALA 70 n 70 ALA 70 C THR 71 n 71 THR 71 C LEU 72 n 72 LEU 72 C THR 73 n 73 THR 73 C ILE 74 n 74 ILE 74 C SER 75 n 75 SER 75 C GLY 76 n 76 GLY 76 C THR 77 n 77 THR 77 C GLN 78 n 78 GLN 78 C ALA 79 n 79 ALA 79 C MET 80 n 80 MET 80 C ASP 81 n 81 ASP 81 C GLU 82 n 82 GLU 82 C ALA 83 n 83 ALA 83 C ASP 84 n 84 ASP 84 C TYR 85 n 85 TYR 85 C TYR 86 n 86 TYR 86 C CYS 87 n 87 CYS 87 C GLN 88 n 88 GLN 88 C ALA 89 n 89 ALA 89 C TRP 90 n 90 TRP 90 C ASP 91 n 91 ASP 91 C SER 92 n 92 SER 92 C SER 93 n 93 SER 93 C THR 94 n 94 THR 94 C VAL 95 n 95 VAL 95 C VAL 96 n 96 VAL 96 C PHE 97 n 97 PHE 97 C GLY 98 n 98 GLY 98 C GLY 99 n 99 GLY 99 C GLY 100 n 100 GLY 100 C THR 101 n 101 THR 101 C LYS 102 n 102 LYS 102 C LEU 103 n 103 LEU 103 C THR 104 n 104 THR 104 C VAL 105 n 105 VAL 105 C G 1 n 1 G 1 R G 2 n 2 G 2 R G 3 n 3 G 3 R A 4 n 4 A 4 R A 5 n 5 A 5 R A 6 n 6 A 6 R C 7 n 7 C 7 R A 8 n 8 A 8 R G 9 n 9 G 9 R C 10 n 10 C 10 R G 11 n 11 G 11 R G 12 n 12 G 12 R A 13 n 13 A 13 R U 14 n 14 U 14 R G 15 n 15 G 15 R G 16 n 16 G 16 R n 17 17 R n 18 18 R n 19 19 R n 20 20 R n 21 21 R n 22 22 R n 23 23 R n 24 24 R C 25 n 25 C 25 R C 26 n 26 C 26 R A 27 n 27 A 27 R U 28 n 28 U 28 R U 29 n 29 U 29 R C 30 n 30 C 30 R G 31 n 31 G 31 R A 32 n 32 A 32 R C 33 n 33 C 33 R C 34 n 34 C 34 R C 35 n 35 C 35 R A 36 n 36 A 36 R U 37 n 37 U 37 R U 38 n 38 U 38 R G 39 n 39 G 39 R G 40 n 40 G 40 R G 41 n 41 G 41 R U 42 n 42 U 42 R G 43 n 43 G 43 R U 44 n 44 U 44 R A 45 n 45 A 45 R G 46 n 46 G 46 R U 47 n 47 U 47 R A 48 n 48 A 48 R C 49 n 49 C 49 R U 50 n 50 U 50 R C 51 n 51 C 51 R U 52 n 52 U 52 R G 53 n 53 G 53 R G 54 n 54 G 54 R U 55 n 55 U 55 R A 56 n 56 A 56 R C 57 n 57 C 57 R U 58 n 58 U 58 R A 59 n 59 A 59 R U 60 n 60 U 60 R G 61 n 61 G 61 R U 62 n 62 U 62 R A 63 n 63 A 63 R C 64 n 64 C 64 R C 65 n 65 C 65 R U 66 n 66 U 66 R U 67 n 67 U 67 R U 68 n 68 U 68 R G 69 n 69 G 69 R U 70 n 70 U 70 R A 71 n 71 A 71 R C 72 n 72 C 72 R G 73 n 73 G 73 R C 74 n 74 C 74 R C 75 n 75 C 75 R U 76 n 76 U 76 R G 77 n 77 G 77 R U 78 n 78 U 78 R U 79 n 79 U 79 R U 80 n 80 U 80 R C 81 n 81 C 81 R C 82 n 82 C 82 R C 83 n 83 C 83 R author_and_software_defined_assembly 4 tetrameric not applicable electron microscopy 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 1.0 1_555 x,y,z identity operation 0.0 0.0 0.0 A N ILE 18 A N ILE 17 A O PHE 25 A O PHE 24 A N ILE 30 A N ILE 29 A O VAL 34 A O VAL 33 A N ILE 37 A N ILE 36 A O THR 73 A O THR 72 A O VAL 74 A O VAL 73 A N TYR 60 A N TYR 59 A O GLN 52 A O GLN 51 A N VAL 49 A N VAL 48 A O LEU 48 A O LEU 47 A N THR 19 A N THR 18 A N LEU 126 A N LEU 125 A O THR 129 A O THR 128 A N TYR 137 A N TYR 136 A O GLY 168 A O GLY 167 A O PHE 169 A O PHE 168 A N GLY 162 A N GLY 161 A O PHE 157 A O PHE 156 A N LEU 150 A N LEU 149 A O CYS 151 A O CYS 150 A N THR 100 A N THR 99 A N VAL 103 A N VAL 102 A O THR 111 A O THR 110 A N ILE 112 A N ILE 111 B O TYR 106 B O TYR 104 B N LEU 7 B N LEU 5 B O ALA 25 B O ALA 23 B N LEU 20 B N LEU 18 B O MET 85 B O MET 83 B O TYR 82 B O TYR 80 B N SER 73 B N SER 71 B N VAL 14 B N VAL 12 B O THR 125 B O THR 123 B O THR 122 B O THR 120 B N TYR 96 B N TYR 94 B O TYR 97 B O TYR 95 B N VAL 39 B N VAL 37 B N TRP 38 B N TRP 36 B O ALA 51 B O ALA 49 B N VAL 52 B N VAL 50 B O TYR 61 B O TYR 59 B N VAL 14 B N VAL 12 B O THR 125 B O THR 123 B O THR 122 B O THR 120 B N TYR 96 B N TYR 94 B N ARG 100 B N ARG 98 B O VAL 117 B O VAL 115 C N VAL 10 C N VAL 10 C O LYS 102 C O LYS 102 C N ILE 20 C N ILE 20 C O LEU 72 C O LEU 72 C O THR 73 C O THR 73 C N SER 62 C N SER 62 C O VAL 44 C O VAL 44 C N GLN 36 C N GLN 36 C N GLN 37 C N GLN 37 C O ASP 84 C O ASP 84 C N ALA 89 C N ALA 89 C O VAL 96 C O VAL 96 1 R OP2 G 16 D OP2 G 16 1 Y 1 A LYS 181 A LYS 180 1 Y 1 R G 17 D G 17 1 Y 1 R U 18 D U 18 1 Y 1 R A 19 D A 19 1 Y 1 R U 20 D U 20 1 Y 1 R C 21 D C 21 1 Y 1 R C 22 D C 22 1 Y 1 R C 23 D C 23 1 Y 1 R A 24 D A 24 1 Y 1 A ASP 32 56.39 -116.48 1 A LEU 94 -93.00 50.55 1 A ASN 106 61.00 -132.69 1 A GLN 145 -99.10 31.99 1 A VAL 161 -122.33 -51.19 1 C ASP 50 71.31 -12.51 1 C SER 51 -143.02 -15.90 1 C THR 104 -99.15 -137.31 4.24 REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS) 0.003 8188 0.507 11440 10.233 1788 0.040 1342 0.004 1193 N HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1 splitRNA 1 N N 2 N N 3 N N 4 N N A ASN 3 A ASN 2 HELX_P A ASN 14 A ASN 13 1 AA1 12 A PRO 38 A PRO 37 HELX_P A GLN 42 A GLN 41 5 AA2 5 A ILE 86 A ILE 85 HELX_P A ILE 90 A ILE 89 5 AA3 5 A LYS 142 A LYS 141 HELX_P A CYS 146 A CYS 145 5 AA4 5 A LYS 174 A LYS 173 HELX_P A PHE 178 A PHE 177 5 AA5 5 B THR 30 B THR 28 HELX_P B TYR 34 B TYR 32 5 AA6 5 C LYS 26 C LYS 26 HELX_P C LYS 30 C LYS 30 5 AA7 5 C GLN 78 C GLN 78 HELX_P C GLU 82 C GLU 82 5 AA8 5 hydrog WATSON-CRICK R G 1 D N1 G 1 1_555 R C 83 D N3 C 83 1_555 hydrog WATSON-CRICK R G 1 D N2 G 1 1_555 R C 83 D O2 C 83 1_555 hydrog WATSON-CRICK R G 1 D O6 G 1 1_555 R C 83 D N4 C 83 1_555 hydrog WATSON-CRICK R G 2 D N1 G 2 1_555 R C 82 D N3 C 82 1_555 hydrog WATSON-CRICK R G 2 D N2 G 2 1_555 R C 82 D O2 C 82 1_555 hydrog WATSON-CRICK R G 2 D O6 G 2 1_555 R C 82 D N4 C 82 1_555 hydrog WATSON-CRICK R G 3 D N1 G 3 1_555 R C 81 D N3 C 81 1_555 hydrog WATSON-CRICK R G 3 D N2 G 3 1_555 R C 81 D O2 C 81 1_555 hydrog WATSON-CRICK R G 3 D O6 G 3 1_555 R C 81 D N4 C 81 1_555 hydrog WATSON-CRICK R A 4 D N1 A 4 1_555 R U 80 D N3 U 80 1_555 hydrog WATSON-CRICK R A 4 D N6 A 4 1_555 R U 80 D O4 U 80 1_555 hydrog WATSON-CRICK R A 5 D N1 A 5 1_555 R U 79 D N3 U 79 1_555 hydrog WATSON-CRICK R A 5 D N6 A 5 1_555 R U 79 D O4 U 79 1_555 hydrog WATSON-CRICK R A 6 D N1 A 6 1_555 R U 78 D N3 U 78 1_555 hydrog WATSON-CRICK R A 6 D N6 A 6 1_555 R U 78 D O4 U 78 1_555 hydrog WATSON-CRICK R C 7 D N3 C 7 1_555 R G 77 D N1 G 77 1_555 hydrog WATSON-CRICK R C 7 D N4 C 7 1_555 R G 77 D O6 G 77 1_555 hydrog WATSON-CRICK R C 7 D O2 C 7 1_555 R G 77 D N2 G 77 1_555 hydrog C-G PAIR R C 10 D O2 C 10 1_555 R G 31 D N1 G 31 1_555 hydrog WATSON-CRICK R G 11 D N1 G 11 1_555 R C 30 D N3 C 30 1_555 hydrog WATSON-CRICK R G 11 D N2 G 11 1_555 R C 30 D O2 C 30 1_555 hydrog WATSON-CRICK R G 11 D O6 G 11 1_555 R C 30 D N4 C 30 1_555 hydrog TYPE_28_PAIR R G 12 D N1 G 12 1_555 R U 29 D O2 U 29 1_555 hydrog TYPE_28_PAIR R G 12 D O6 G 12 1_555 R U 29 D N3 U 29 1_555 hydrog WATSON-CRICK R A 13 D N1 A 13 1_555 R U 28 D N3 U 28 1_555 hydrog WATSON-CRICK R A 13 D N6 A 13 1_555 R U 28 D O4 U 28 1_555 hydrog WATSON-CRICK R U 14 D N3 U 14 1_555 R A 27 D N1 A 27 1_555 hydrog WATSON-CRICK R U 14 D O4 U 14 1_555 R A 27 D N6 A 27 1_555 hydrog WATSON-CRICK R G 15 D N1 G 15 1_555 R C 26 D N3 C 26 1_555 hydrog WATSON-CRICK R G 15 D N2 G 15 1_555 R C 26 D O2 C 26 1_555 hydrog WATSON-CRICK R G 15 D O6 G 15 1_555 R C 26 D N4 C 26 1_555 hydrog WATSON-CRICK R A 32 D N1 A 32 1_555 R U 42 D N3 U 42 1_555 hydrog WATSON-CRICK R A 32 D N6 A 32 1_555 R U 42 D O4 U 42 1_555 hydrog WATSON-CRICK R C 33 D N3 C 33 1_555 R G 41 D N1 G 41 1_555 hydrog WATSON-CRICK R C 33 D N4 C 33 1_555 R G 41 D O6 G 41 1_555 hydrog WATSON-CRICK R C 33 D O2 C 33 1_555 R G 41 D N2 G 41 1_555 hydrog WATSON-CRICK R C 34 D N3 C 34 1_555 R G 40 D N1 G 40 1_555 hydrog WATSON-CRICK R C 34 D N4 C 34 1_555 R G 40 D O6 G 40 1_555 hydrog WATSON-CRICK R C 34 D O2 C 34 1_555 R G 40 D N2 G 40 1_555 hydrog WATSON-CRICK R C 35 D N3 C 35 1_555 R G 39 D N1 G 39 1_555 hydrog WATSON-CRICK R C 35 D N4 C 35 1_555 R G 39 D O6 G 39 1_555 hydrog WATSON-CRICK R C 35 D O2 C 35 1_555 R G 39 D N2 G 39 1_555 hydrog G-C PAIR R G 43 D O6 G 43 1_555 R C 74 D N4 C 74 1_555 hydrog G-C PAIR R G 43 D N2 G 43 1_555 R C 75 D O2 C 75 1_555 hydrog TYPE_8_PAIR R A 45 D N1 A 45 1_555 R G 73 D N1 G 73 1_555 hydrog TYPE_8_PAIR R A 45 D N6 A 45 1_555 R G 73 D O6 G 73 1_555 hydrog G-C PAIR R G 46 D O6 G 46 1_555 R C 72 D N4 C 72 1_555 hydrog U-A PAIR R U 47 D N3 U 47 1_555 R A 71 D N1 A 71 1_555 hydrog WATSON-CRICK R A 48 D N1 A 48 1_555 R U 70 D N3 U 70 1_555 hydrog WATSON-CRICK R A 48 D N6 A 48 1_555 R U 70 D O4 U 70 1_555 hydrog WATSON-CRICK R C 49 D N3 C 49 1_555 R G 69 D N1 G 69 1_555 hydrog WATSON-CRICK R C 49 D N4 C 49 1_555 R G 69 D O6 G 69 1_555 hydrog WATSON-CRICK R C 49 D O2 C 49 1_555 R G 69 D N2 G 69 1_555 hydrog C-U MISPAIR R C 51 D N3 C 51 1_555 R U 67 D N3 U 67 1_555 hydrog WATSON-CRICK R G 53 D N1 G 53 1_555 R C 65 D N3 C 65 1_555 hydrog WATSON-CRICK R G 53 D N2 G 53 1_555 R C 65 D O2 C 65 1_555 hydrog WATSON-CRICK R G 53 D O6 G 53 1_555 R C 65 D N4 C 65 1_555 hydrog WATSON-CRICK R G 54 D N1 G 54 1_555 R C 64 D N3 C 64 1_555 hydrog WATSON-CRICK R G 54 D N2 G 54 1_555 R C 64 D O2 C 64 1_555 hydrog WATSON-CRICK R G 54 D O6 G 54 1_555 R C 64 D N4 C 64 1_555 hydrog WATSON-CRICK R U 55 D N3 U 55 1_555 R A 63 D N1 A 63 1_555 hydrog WATSON-CRICK R U 55 D O4 U 55 1_555 R A 63 D N6 A 63 1_555 hydrog WATSON-CRICK R A 56 D N1 A 56 1_555 R U 62 D N3 U 62 1_555 hydrog WATSON-CRICK R A 56 D N6 A 56 1_555 R U 62 D O4 U 62 1_555 hydrog WATSON-CRICK R C 57 D N3 C 57 1_555 R G 61 D N1 G 61 1_555 hydrog WATSON-CRICK R C 57 D N4 C 57 1_555 R G 61 D O6 G 61 1_555 hydrog WATSON-CRICK R C 57 D O2 C 57 1_555 R G 61 D N2 G 61 1_555 RNA BINDING PROTEIN/IMMUNE SYSTEM/RNA cloverleafRNA, 3c, complex, RNA BINDING PROTEIN/IMMUNE SYSTEM/RNA, RNA BINDING PROTEIN-IMMUNE SYSTEM-RNA complex POLG_HRV14 UNP 1 1539 P03303 PNTEFALSLLRKNIMTITTSKGEFTGLGIHDRVCVIPTHAQPGDDVLVNGQKIRVKDKYKLVDPENINLELTVLTLDRNE KFRDIRGFISEDLEGVDATLVVHSNNFTNTILEVGPVTMAGLINLSSTPTNRMIRYDYATKTGQCGGVLCATGKIFGIHV GGNGRQGFSAQLKKQYFVEK 9URM PDB 2 1 9URM 9URM PDB 3 1 9URM 9URM PDB 4 1 9URM 1539 1718 9URM 2 181 P03303 A 1 1 180 3 129 9URM 3 129 9URM B 2 1 127 1 105 9URM 1 105 9URM C 3 1 105 1 83 9URM 1 83 9URM R 4 1 83 7 8 4 6 4 2 3 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 15 A ILE 14 A THR 20 A THR 19 A GLY 23 A GLY 22 A HIS 31 A HIS 30 A VAL 34 A VAL 33 A ILE 37 A ILE 36 A ASN 69 A ASN 68 A ASP 78 A ASP 77 A GLN 52 A GLN 51 A VAL 63 A VAL 62 A ASP 46 A ASP 45 A VAL 49 A VAL 48 A ILE 15 A ILE 14 A THR 20 A THR 19 A THR 119 A THR 118 A LEU 126 A LEU 125 A THR 129 A THR 128 A TYR 137 A TYR 136 A GLY 168 A GLY 167 A GLN 172 A GLN 171 A LYS 155 A LYS 154 A GLY 163 A GLY 162 A VAL 149 A VAL 148 A ALA 152 A ALA 151 A ASP 98 A ASP 97 A SER 105 A SER 104 A PHE 108 A PHE 107 A PRO 117 A PRO 116 B GLY 105 B GLY 103 B ASP 107 B ASP 105 B GLN 5 B GLN 3 B GLY 10 B GLY 8 B SER 19 B SER 17 B SER 27 B SER 25 B THR 80 B THR 78 B ASN 86 B ASN 84 B PHE 70 B PHE 68 B ASP 75 B ASP 73 B VAL 13 B VAL 11 B VAL 14 B VAL 12 B THR 122 B THR 120 B VAL 126 B VAL 124 B ALA 94 B ALA 92 B VAL 101 B VAL 99 B MET 36 B MET 34 B GLN 41 B GLN 39 B LEU 47 B LEU 45 B ILE 53 B ILE 51 B LYS 60 B LYS 58 B TYR 62 B TYR 60 B VAL 13 B VAL 11 B VAL 14 B VAL 12 B THR 122 B THR 120 B VAL 126 B VAL 124 B ALA 94 B ALA 92 B VAL 101 B VAL 99 B MET 115 B MET 113 B TRP 118 B TRP 116 C SER 9 C SER 9 C VAL 10 C VAL 10 C LYS 102 C LYS 102 C LEU 103 C LEU 103 C THR 17 C THR 17 C SER 23 C SER 23 C THR 69 C THR 69 C SER 75 C SER 75 C PHE 61 C PHE 61 C SER 66 C SER 66 C VAL 44 C VAL 44 C ILE 47 C ILE 47 C TYR 31 C TYR 31 C GLN 37 C GLN 37 C ASP 84 C ASP 84 C ASP 91 C ASP 91 C THR 94 C THR 94 C PHE 97 C PHE 97 1 P 1