1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Sun, Y.T. Varani, G. Seattle Structural Genomics Center for Infectious Disease (SSGCID) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N O N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing UK Rna RNARFU 2122 1469-9001 28 1210 1223 10.1261/rna.079197.122 35750488 Structure of the dengue virus RNA promoter. 2022 0000-0001-6196-1727 0000-0001-6642-7144 10.2210/pdb7umc/pdb pdb_00007umc 10.13018/BMR31008 22614.471 RNA (70-MER) 1 syn polymer no no GGAGUGGUUAGUCUACGUGGACCGACAAGACUUCGGUCGAAUCGGAAGGAAACUUAACGUAGUUCUAACC GGAGUGGUUAGUCUACGUGGACCGACAAGACUUCGGUCGAAUCGGAAGGAAACUUAACGUAGUUCUAACC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1.736 1 19 A 6 A 70 -1.015 A_G6:C70_A 1 -5.567 -0.169 -0.043 0.116 -2.053 1 19 A 7 A 69 4.974 A_G7:C69_A 2 -14.293 -0.286 0.009 -0.091 -1.104 1 20 A 8 A 68 2.965 A_U8:A68_A 3 -12.397 0.140 0.036 -0.184 -1.242 1 20 A 9 A 67 1.678 A_U9:A67_A 4 -6.170 0.111 -0.052 -0.193 -1.368 1 20 A 10 A 66 1.596 A_A10:U66_A 5 -3.651 0.175 -0.057 -0.116 -0.681 1 19 A 11 A 65 4.811 A_G11:C65_A 6 -7.252 -0.098 0.008 -0.058 0.746 1 19 A 13 A 62 -8.815 A_C13:G62_A 7 -0.780 0.618 -0.686 0.061 -0.484 1 20 A 14 A 61 -9.433 A_U14:A61_A 8 -9.548 0.197 -0.144 -0.149 -2.156 1 20 A 15 A 60 -7.974 A_A15:U60_A 9 -10.107 0.035 -0.064 -0.170 2.108 1 19 A 16 A 59 -0.838 A_C16:G59_A 10 -14.115 0.548 0.003 -0.129 0.464 1 19 A 17 A 58 0.670 A_G17:C58_A 11 -15.316 -0.600 0.213 -0.217 -0.349 1 20 A 18 A 57 -3.241 A_U18:A57_A 12 -12.319 -0.323 0.295 -0.023 44.125 6 A 35 A 32 118.334 A_G35:U32_A 13 16.755 0.289 1.349 2.920 -0.348 1 19 A 36 A 31 -0.536 A_G36:C31_A 14 -2.914 -1.023 -0.056 -0.325 1.706 1 20 A 37 A 30 -7.622 A_U37:A30_A 15 -8.032 -0.081 -0.096 -0.154 0.029 1 19 A 38 A 29 -4.644 A_C38:G29_A 16 -6.619 -0.123 -0.145 0.201 -7.365 1 8 A 39 A 28 -8.359 A_G39:A28_A 17 -6.864 -0.523 -0.814 1.250 -7.250 1 A 40 A 27 -9.866 A_A40:A27_A 18 4.154 1.385 -0.662 1.124 9.364 A 41 A 26 -13.255 A_A41:C26_A 19 16.378 1.709 -0.492 0.294 1.251 1 20 A 42 A 25 -6.359 A_U42:A25_A 20 -9.935 0.114 -0.008 -0.252 4.329 1 19 A 43 A 24 2.916 A_C43:G24_A 21 -13.355 -0.003 -0.003 -0.121 -2.009 1 19 A 44 A 23 4.086 A_G44:C23_A 22 -13.396 -0.606 -0.087 -0.225 -10.172 1 19 A 45 A 22 -4.619 A_G45:C22_A 23 -5.767 -0.453 -0.216 0.155 -7.803 A 46 A 56 -22.954 A_A46:A56_A 24 -7.045 3.976 2.180 0.175 10.590 1 20 A 47 A 54 3.088 A_A47:U54_A 25 -25.332 -0.191 0.319 0.036 1.896 1 19 A 48 A 53 4.219 A_G48:C53_A 26 -8.260 -0.720 -0.015 -0.295 28.130 9 11 A 49 A 52 -3.554 A_G49:A52_A 27 13.860 6.853 1.009 -4.328 2.771 32.351 A A 6 7 14.346 A A 70 69 3.298 7.914 0.200 -1.778 AA_G6G7:C69C70_AA 1 -1.083 1.963 31.374 -4.510 -0.540 3.051 34.217 A A 7 8 8.355 A A 69 68 3.283 4.900 -0.076 -1.447 AA_G7U8:A68C69_AA 2 -0.611 1.041 33.870 -3.211 0.035 2.838 32.449 A A 8 9 14.461 A A 68 67 3.293 8.001 -0.012 -1.485 AA_U8U9:A67A68_AA 3 0.877 -1.585 31.461 -3.995 0.168 2.809 31.871 A A 9 10 16.219 A A 67 66 3.329 8.796 0.006 -1.471 AA_U9A10:U66A67_AA 4 0.668 -1.232 30.657 -4.212 0.106 2.569 29.913 A A 10 11 19.989 A A 66 65 3.292 10.122 0.101 -1.615 AA_A10G11:C65U66_AA 5 -0.396 0.781 28.182 -5.067 -0.272 3.461 30.769 A A 13 14 2.579 A A 62 61 3.536 1.368 -0.047 -1.667 AA_C13U14:A61G62_AA 6 -0.834 1.572 30.728 -3.428 -0.086 3.072 32.429 A A 14 15 9.063 A A 61 60 3.346 5.042 0.008 -1.553 AA_U14A15:U60A61_AA 7 -0.417 0.750 32.043 -3.655 -0.088 2.971 34.023 A A 15 16 7.257 A A 60 59 3.183 4.236 0.205 -1.549 AA_A15C16:G59U60_AA 8 -0.284 0.487 33.765 -3.286 -0.393 2.361 28.264 A A 16 17 20.408 A A 59 58 3.163 9.759 0.082 -1.769 AA_C16G17:C58G59_AA 9 -2.069 4.328 26.478 -5.602 -0.587 3.055 32.873 A A 17 18 9.331 A A 58 57 3.345 5.255 -0.165 -1.627 AA_G17U18:A57C58_AA 10 -2.248 3.991 32.386 -3.761 -0.087 4.150 99.089 A A 35 36 -1.475 A A 32 31 3.746 -2.235 2.785 -0.037 AA_G35G36:C31U32_AA 11 21.639 -14.283 97.290 0.020 -1.404 2.756 36.898 A A 36 37 16.328 A A 31 30 3.261 10.208 -0.292 -1.461 AA_G36U37:A30C31_AA 12 -0.823 1.316 35.496 -3.604 0.357 2.857 34.479 A A 37 38 13.317 A A 30 29 3.298 7.828 0.175 -1.649 AA_U37C38:G29A30_AA 13 0.857 -1.458 33.594 -3.941 -0.168 2.434 32.309 A A 38 39 23.730 A A 29 28 3.452 12.828 -0.069 -1.842 AA_C38G39:A28G29_AA 14 3.746 -6.929 29.483 -5.455 0.750 3.005 35.846 A A 39 40 14.532 A A 28 27 3.456 8.857 -0.041 -1.466 AA_G39A40:A27A28_AA 15 -0.476 0.781 34.767 -3.657 -0.002 2.152 30.390 A A 40 41 28.480 A A 27 26 3.164 14.356 -0.081 -1.392 AA_A40A41:C26A27_AA 16 1.262 -2.503 26.828 -5.149 0.373 4.285 34.321 A A 41 42 -27.233 A A 26 25 4.145 -15.415 -0.239 -1.368 AA_A41U42:A25C26_AA 17 -6.733 11.896 30.025 1.020 -1.052 3.248 31.882 A A 42 43 -0.074 A A 25 24 3.227 -0.041 0.587 -1.544 AA_U42C43:G24A25_AA 18 1.199 -2.183 31.860 -2.804 -0.853 2.726 30.296 A A 43 44 15.076 A A 24 23 3.261 7.794 0.232 -1.710 AA_C43G44:C23G24_AA 19 0.064 -0.124 29.299 -4.737 -0.432 3.303 35.706 A A 44 45 5.057 A A 23 22 3.471 3.097 -0.074 -1.823 AA_G44G45:C22C23_AA 20 0.856 -1.398 35.566 -3.437 0.248 2.339 44.070 A A 45 46 26.105 A A 22 56 3.169 18.841 -2.573 -2.492 AA_G45A46:A56C22_AA 21 -9.930 13.758 38.808 -4.922 2.585 0.014 43.803 A A 46 47 56.110 A A 56 54 4.627 34.807 1.001 -2.442 AA_A46A47:U54A56_AA 22 -16.353 26.362 21.380 -6.537 -2.874 1.863 35.169 A A 47 48 29.723 A A 54 53 3.060 17.121 -0.412 -1.778 AA_A47G48:C53U54_AA 23 -6.598 11.454 30.133 -5.025 -0.120 1.977 61.097 A A 48 49 17.958 A A 53 52 2.247 18.032 -0.518 -0.685 AA_G48G49:A52C53_AA 24 0.415 -0.413 58.621 -1.243 0.523 citation pdbx_database_status chem_comp_atom chem_comp_bond database_2 repository Initial release Database references Other Data collection Database references 1 0 2022-07-06 1 1 2022-08-24 1 2 2023-06-14 1 3 2024-05-15 _citation.journal_volume _citation.page_first _citation.page_last _citation.title _pdbx_database_status.status_code_nmr_data _database_2.pdbx_DOI United States Other private varani@chem.washington.edu 0000-0001-6642-7144 Gabriele Varani principal investigator/group leader DENV1 SLA RNA (DenvSLATL) N RCSB Y RCSB 2022-04-06 REL REL REL REL 11053 Dengue virus 1 sample 1 70 structures with the lowest energy 400 10 isotropic 2 2D 1H-1H NOESY isotropic 2 2D 1H-1H TOCSY isotropic 2 2D 1H-1H NOESY isotropic 2 2D 1H-1H TOCSY isotropic 2 2D 1H-1H NOESY 1 mM natural abundance 10 mM natural abundance 1 mM natural abundance 10 mM natural abundance 1 mM [U-2H] 10 mM natural abundance 50 mM condition 6.5 pH 1 atm 298 K simulated annealing 1 lowest energy 1 mM RNA (70-MER), 10 mM potassium phosphate, 95% H2O/5% D2O H_sample_h2o 95% H2O/5% D2O solution 1 mM RNA (70-MER), 10 mM potassium phosphate, 100% D2O H_sample_d2o 100% D2O solution 1 mM [U-2H] RNA (70-MER), 10 mM potassium phosphate, 100% D2O D_sample 100% D2O solution Bruker Biospin collection TopSpin Bruker Biospin processing TopSpin Lee W, Tonelli M, Markley JL peak picking NMRFAM-SPARKY Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore structure calculation X-PLOR NIH 600 Bruker AVANCE III 800 Bruker AVANCE III G 1 n 1 G 1 A G 2 n 2 G 2 A A 3 n 3 A 3 A G 4 n 4 G 4 A U 5 n 5 U 5 A G 6 n 6 G 6 A G 7 n 7 G 7 A U 8 n 8 U 8 A U 9 n 9 U 9 A A 10 n 10 A 10 A G 11 n 11 G 11 A U 12 n 12 U 12 A C 13 n 13 C 13 A U 14 n 14 U 14 A A 15 n 15 A 15 A C 16 n 16 C 16 A G 17 n 17 G 17 A U 18 n 18 U 18 A G 19 n 19 G 19 A G 20 n 20 G 20 A A 21 n 21 A 21 A C 22 n 22 C 22 A C 23 n 23 C 23 A G 24 n 24 G 24 A A 25 n 25 A 25 A C 26 n 26 C 26 A A 27 n 27 A 27 A A 28 n 28 A 28 A G 29 n 29 G 29 A A 30 n 30 A 30 A C 31 n 31 C 31 A U 32 n 32 U 32 A U 33 n 33 U 33 A C 34 n 34 C 34 A G 35 n 35 G 35 A G 36 n 36 G 36 A U 37 n 37 U 37 A C 38 n 38 C 38 A G 39 n 39 G 39 A A 40 n 40 A 40 A A 41 n 41 A 41 A U 42 n 42 U 42 A C 43 n 43 C 43 A G 44 n 44 G 44 A G 45 n 45 G 45 A A 46 n 46 A 46 A A 47 n 47 A 47 A G 48 n 48 G 48 A G 49 n 49 G 49 A A 50 n 50 A 50 A A 51 n 51 A 51 A A 52 n 52 A 52 A C 53 n 53 C 53 A U 54 n 54 U 54 A U 55 n 55 U 55 A A 56 n 56 A 56 A A 57 n 57 A 57 A C 58 n 58 C 58 A G 59 n 59 G 59 A U 60 n 60 U 60 A A 61 n 61 A 61 A G 62 n 62 G 62 A U 63 n 63 U 63 A U 64 n 64 U 64 A C 65 n 65 C 65 A U 66 n 66 U 66 A A 67 n 67 A 67 A A 68 n 68 A 68 A C 69 n 69 C 69 A C 70 n 70 C 70 A author_defined_assembly 1 monomeric NMR Distance Restraints SAXS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 10 A A H21 O2 G C 48 53 1.59 5 A C 26 0.067 SIDE CHAIN 5 A A 41 0.063 SIDE CHAIN 1 -4.41 0.70 109.70 105.29 A A A C1' O4' C4' A A A 56 56 56 N 3 -4.60 0.70 109.70 105.10 A A A C1' O4' C4' A A A 56 56 56 N N DENV1 SLA RNA (DenvSLATL) 1 N N hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 A C 70 A N3 C 70 1_555 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 A C 70 A O2 C 70 1_555 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 A C 70 A N4 C 70 1_555 hydrog WATSON-CRICK A G 7 A N1 G 7 1_555 A C 69 A N3 C 69 1_555 hydrog WATSON-CRICK A G 7 A N2 G 7 1_555 A C 69 A O2 C 69 1_555 hydrog WATSON-CRICK A G 7 A O6 G 7 1_555 A C 69 A N4 C 69 1_555 hydrog WATSON-CRICK A U 8 A N3 U 8 1_555 A A 68 A N1 A 68 1_555 hydrog WATSON-CRICK A U 8 A O4 U 8 1_555 A A 68 A N6 A 68 1_555 hydrog WATSON-CRICK A U 9 A N3 U 9 1_555 A A 67 A N1 A 67 1_555 hydrog WATSON-CRICK A U 9 A O4 U 9 1_555 A A 67 A N6 A 67 1_555 hydrog WATSON-CRICK A A 10 A N1 A 10 1_555 A U 66 A N3 U 66 1_555 hydrog WATSON-CRICK A A 10 A N6 A 10 1_555 A U 66 A O4 U 66 1_555 hydrog WATSON-CRICK A G 11 A N1 G 11 1_555 A C 65 A N3 C 65 1_555 hydrog WATSON-CRICK A G 11 A N2 G 11 1_555 A C 65 A O2 C 65 1_555 hydrog WATSON-CRICK A G 11 A O6 G 11 1_555 A C 65 A N4 C 65 1_555 hydrog WATSON-CRICK A C 13 A N3 C 13 1_555 A G 62 A N1 G 62 1_555 hydrog WATSON-CRICK A C 13 A N4 C 13 1_555 A G 62 A O6 G 62 1_555 hydrog WATSON-CRICK A C 13 A O2 C 13 1_555 A G 62 A N2 G 62 1_555 hydrog WATSON-CRICK A U 14 A N3 U 14 1_555 A A 61 A N1 A 61 1_555 hydrog WATSON-CRICK A U 14 A O4 U 14 1_555 A A 61 A N6 A 61 1_555 hydrog WATSON-CRICK A A 15 A N1 A 15 1_555 A U 60 A N3 U 60 1_555 hydrog WATSON-CRICK A A 15 A N6 A 15 1_555 A U 60 A O4 U 60 1_555 hydrog WATSON-CRICK A C 16 A N3 C 16 1_555 A G 59 A N1 G 59 1_555 hydrog WATSON-CRICK A C 16 A N4 C 16 1_555 A G 59 A O6 G 59 1_555 hydrog WATSON-CRICK A C 16 A O2 C 16 1_555 A G 59 A N2 G 59 1_555 hydrog WATSON-CRICK A G 17 A N1 G 17 1_555 A C 58 A N3 C 58 1_555 hydrog WATSON-CRICK A G 17 A N2 G 17 1_555 A C 58 A O2 C 58 1_555 hydrog WATSON-CRICK A G 17 A O6 G 17 1_555 A C 58 A N4 C 58 1_555 hydrog WATSON-CRICK A U 18 A N3 U 18 1_555 A A 57 A N1 A 57 1_555 hydrog WATSON-CRICK A U 18 A O4 U 18 1_555 A A 57 A N6 A 57 1_555 hydrog WATSON-CRICK A C 22 A N3 C 22 1_555 A G 45 A N1 G 45 1_555 hydrog WATSON-CRICK A C 22 A N4 C 22 1_555 A G 45 A O6 G 45 1_555 hydrog WATSON-CRICK A C 22 A O2 C 22 1_555 A G 45 A N2 G 45 1_555 hydrog WATSON-CRICK A C 23 A N3 C 23 1_555 A G 44 A N1 G 44 1_555 hydrog WATSON-CRICK A C 23 A N4 C 23 1_555 A G 44 A O6 G 44 1_555 hydrog WATSON-CRICK A C 23 A O2 C 23 1_555 A G 44 A N2 G 44 1_555 hydrog WATSON-CRICK A G 24 A N1 G 24 1_555 A C 43 A N3 C 43 1_555 hydrog WATSON-CRICK A G 24 A N2 G 24 1_555 A C 43 A O2 C 43 1_555 hydrog WATSON-CRICK A G 24 A O6 G 24 1_555 A C 43 A N4 C 43 1_555 hydrog WATSON-CRICK A A 25 A N1 A 25 1_555 A U 42 A N3 U 42 1_555 hydrog WATSON-CRICK A A 25 A N6 A 25 1_555 A U 42 A O4 U 42 1_555 hydrog C-A MISPAIR A C 26 A N4 C 26 1_555 A A 41 A N1 A 41 1_555 hydrog A-A MISPAIR A A 27 A N6 A 27 1_555 A A 40 A N1 A 40 1_555 hydrog TYPE_8_PAIR A A 28 A N1 A 28 1_555 A G 39 A N1 G 39 1_555 hydrog TYPE_8_PAIR A A 28 A N6 A 28 1_555 A G 39 A O6 G 39 1_555 hydrog WATSON-CRICK A G 29 A N1 G 29 1_555 A C 38 A N3 C 38 1_555 hydrog WATSON-CRICK A G 29 A N2 G 29 1_555 A C 38 A O2 C 38 1_555 hydrog WATSON-CRICK A G 29 A O6 G 29 1_555 A C 38 A N4 C 38 1_555 hydrog WATSON-CRICK A A 30 A N1 A 30 1_555 A U 37 A N3 U 37 1_555 hydrog WATSON-CRICK A A 30 A N6 A 30 1_555 A U 37 A O4 U 37 1_555 hydrog WATSON-CRICK A C 31 A N3 C 31 1_555 A G 36 A N1 G 36 1_555 hydrog WATSON-CRICK A C 31 A N4 C 31 1_555 A G 36 A O6 G 36 1_555 hydrog WATSON-CRICK A C 31 A O2 C 31 1_555 A G 36 A N2 G 36 1_555 hydrog U-G MISPAIR A U 32 A O2 U 32 1_555 A G 35 A N1 G 35 1_555 hydrog A-A MISPAIR A A 46 A N1 A 46 1_555 A A 56 A N6 A 56 1_555 hydrog WATSON-CRICK A A 47 A N1 A 47 1_555 A U 54 A N3 U 54 1_555 hydrog WATSON-CRICK A A 47 A N6 A 47 1_555 A U 54 A O4 U 54 1_555 hydrog WATSON-CRICK A G 48 A N1 G 48 1_555 A C 53 A N3 C 53 1_555 hydrog WATSON-CRICK A G 48 A N2 G 48 1_555 A C 53 A O2 C 53 1_555 hydrog WATSON-CRICK A G 48 A O6 G 48 1_555 A C 53 A N4 C 53 1_555 hydrog TYPE_11_PAIR A G 49 A N2 G 49 1_555 A A 52 A N7 A 52 1_555 hydrog TYPE_11_PAIR A G 49 A N3 G 49 1_555 A A 52 A N6 A 52 1_555 RNA flavivirus, 5' UTR, SLA, viral replication, NS5 promoter, RNA 7UMC PDB 1 1 7UMC 1 70 7UMC 1 70 7UMC A 1 1 70