0.008691 0.000000 0.003319 0.000000 0.025596 0.000000 0.000000 0.000000 0.015646 0.00000 0.00000 0.00000 0000-0001-8339-3230 Malecka, M.Z. 0000-0003-3195-9129 Bommer, M. 0000-0002-8191-3850 Heinemann, U. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 110.90 90.00 115.060 39.069 68.418 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N O N 59 N P N 60 N O N 61 N O N 62 N O N 63 N C N 64 R C N 65 N O N 66 S C N 67 N O N 68 N C N 69 R C Y 70 N N Y 71 N C Y 72 N N Y 73 N C Y 74 N C N 75 N N Y 76 N N Y 77 N C Y 78 N N Y 79 N C N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N O N 95 N P N 96 N O N 97 N O N 98 N O N 99 N C N 100 R C N 101 N O N 102 S C N 103 N O N 104 N C N 105 R C N 106 N N N 107 N C N 108 N O N 109 N N N 110 N C N 111 N N N 112 N C N 113 N C N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N O N 129 N P N 130 N O N 131 N O N 132 N O N 133 N C N 134 R C N 135 N O N 136 S C N 137 N O N 138 N C N 139 R C Y 140 N N Y 141 N C Y 142 N N Y 143 N C N 144 N C N 145 N O N 146 N N N 147 N C N 148 N N N 149 N N Y 150 N C N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N O N 166 N P N 167 N O N 168 N O N 169 N O N 170 N C N 171 R C N 172 N O N 173 S C N 174 N O N 175 N C N 176 R C N 177 N N N 178 N C N 179 N O N 180 N N N 181 N C N 182 N O N 183 N C N 184 N C N 185 N C N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N C N 208 N O N 209 N N N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N O N 229 N O N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 N C N 242 N C N 243 N O N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N N Y 257 N C Y 258 N C Y 259 N N N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N O N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 S C N 279 N C N 280 N C N 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N C N 302 N C N 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C N 323 N C N 324 N C N 325 N C N 326 N N N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N C N 349 N S N 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N N N 387 S C N 388 N C N 389 N O N 390 N C N 391 N C N 392 N C N 393 N O N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N O N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 R C N 422 N O N 423 N C N 424 N O N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N N Y 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N C N 448 N O N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N N N 462 S C N 463 N C N 464 N O N 465 N C Y 466 N C Y 467 N C Y 468 N C Y 469 N C Y 470 N C Y 471 N C N 472 N O N 473 N O N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N N N 486 S C N 487 N C N 488 N O N 489 N C N 490 N C N 491 N C N 492 N O N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing Y 78 N sing Y 79 N sing Y 80 N doub N 81 N sing Y 82 N sing Y 83 N sing Y 84 N doub N 85 N sing Y 86 N doub N 87 N sing N 88 N sing Y 89 N sing Y 90 N doub N 91 N sing Y 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing Y 151 N sing Y 152 N sing Y 153 N doub N 154 N sing Y 155 N sing N 156 N sing Y 157 N doub N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N sing Y 262 N doub Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing Y 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N doub N 374 N sing Y 375 N doub N 376 N sing Y 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N doub N 434 N sing N 435 N sing N 436 N sing N 437 N sing Y 438 N doub Y 439 N sing Y 440 N sing N 441 N sing Y 442 N doub Y 443 N sing Y 444 N sing N 445 N sing Y 446 N sing Y 447 N doub N 448 N sing Y 449 N doub N 450 N sing Y 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub N 471 N sing Y 472 N doub N 473 N sing Y 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing US Biorxiv 2692-8205 10.64898/2026.02.27.708450 Quantification of the effects of single nucleotide variants in NKX2.1 transcription factor binding sites 2026 10.2210/pdb9u18/pdb pdb_00009u18 100 1 N PIXEL 2017-07-02 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.987 1.0 P13 (MX1) PETRA III, EMBL c/o DESY 0.987 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 3677.415 CAAG-containing 12bp forward strand 2 syn polymer 3342.212 12bp reverse complementary 1 syn polymer aa192-250 of NP_001073136.1 7546.833 Homeobox protein Nkx-2.1 2 man polymer 3661.416 12bp reverse complementary 1 syn polymer 18.015 water 349 nat water Homeobox protein NK-2 homolog A,Thyroid nuclear factor 1,Thyroid transcription factor 1,TTF-1,Thyroid-specific enhancer-binding protein,T/EBP no no (DA)(DG)(DT)(DC)(DA)(DA)(DG)(DT)(DG)(DT)(DT)(DC) AGTCAAGTGTTC A,D polydeoxyribonucleotide no no (DG)(DA)(DA)(DC)(DA)(DC)(DT)(DT)(DG)(DA)(DC) GAACACTTGAC B polydeoxyribonucleotide no no GRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ GRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ C,F polypeptide(L) no no (DG)(DA)(DA)(DC)(DA)(DC)(DT)(DT)(DG)(DA)(DT)(DT) GAACACTTGATT E polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 1 60 NKX2-1, NKX2A, TITF1, TTF1 9606 Homo sapiens 866768 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Biological sequence 1 2.44 49.57 VAPOR DIFFUSION, HANGING DROP 0.1M succinate pH 5.5, 20% P4000, 0.2M NaCl 291 -14.204 1 19 A 2 B 11 0.892 A_DG2:DC11_B 1 -12.324 -0.250 -0.126 -0.093 -13.851 1 20 A 3 B 10 -2.205 A_DT3:DA10_B 2 -8.224 -0.165 0.206 -0.052 5.574 1 19 A 4 B 9 1.653 A_DC4:DG9_B 3 -1.718 0.310 -0.497 -0.120 8.336 1 20 A 5 B 8 0.093 A_DA5:DT8_B 4 -15.241 0.002 -0.091 -0.171 8.314 1 20 A 6 B 7 -0.942 A_DA6:DT7_B 5 -17.907 0.121 0.148 -0.095 -7.282 1 19 A 7 B 6 -0.365 A_DG7:DC6_B 6 -5.374 -0.142 -0.128 -0.110 3.022 1 20 A 8 B 5 3.923 A_DT8:DA5_B 7 -10.903 -0.092 0.086 -0.198 -6.259 1 19 A 9 B 4 -2.178 A_DG9:DC4_B 8 -2.370 -0.104 -0.115 -0.064 -0.885 1 20 A 10 B 3 0.751 A_DT10:DA3_B 9 -10.475 -0.105 0.111 -0.160 -3.553 1 20 A 11 B 2 -1.543 A_DT11:DA2_B 10 -5.558 -0.046 -0.070 -0.153 -0.037 1 19 A 12 B 1 -0.134 A_DC12:DG1_B 11 -3.888 0.234 -0.169 -0.158 -0.658 1 20 D 1 E 12 1.519 D_DA1:DT12_E 12 -8.943 0.105 0.233 -0.261 -10.448 1 28 D 2 E 11 -2.489 D_DG2:DT11_E 13 -12.170 -0.051 0.102 -0.106 -11.741 1 20 D 3 E 10 -4.017 D_DT3:DA10_E 14 -8.924 -0.257 0.282 -0.010 1.901 1 19 D 4 E 9 -0.068 D_DC4:DG9_E 15 3.151 0.205 -0.200 -0.165 9.973 1 20 D 5 E 8 5.708 D_DA5:DT8_E 16 -18.435 0.235 0.021 -0.085 8.846 1 20 D 6 E 7 5.264 D_DA6:DT7_E 17 -15.232 0.146 0.147 -0.104 -3.416 1 19 D 7 E 6 0.134 D_DG7:DC6_E 18 -10.395 -0.244 -0.093 -0.163 2.686 1 20 D 8 E 5 6.919 D_DT8:DA5_E 19 -12.165 -0.142 0.076 -0.179 -3.884 1 19 D 9 E 4 -0.589 D_DG9:DC4_E 20 0.162 -0.158 -0.083 -0.080 0.606 1 20 D 10 E 3 1.487 D_DT10:DA3_E 21 -12.065 -0.198 0.059 -0.145 -2.864 1 20 D 11 E 2 -0.294 D_DT11:DA2_E 22 -8.130 -0.004 -0.208 -0.177 -0.676 1 19 D 12 E 1 -0.220 D_DC12:DG1_E 23 -3.673 0.256 -0.192 -0.141 3.304 34.694 A A 2 3 -0.976 B B 11 10 3.248 -0.581 -0.789 -0.598 AA_DG2DT3:DA10DC11_BB 1 -2.425 4.071 34.607 -0.913 0.950 3.065 35.920 A A 3 4 -0.293 B B 10 9 2.892 -0.180 1.321 1.786 AA_DT3DC4:DG9DA10_BB 2 6.270 -10.215 35.386 2.919 -1.320 3.723 34.101 A A 4 5 12.765 B B 9 8 3.320 7.412 -0.960 1.846 AA_DC4DA5:DT8DG9_BB 3 -4.029 6.939 33.071 1.860 0.938 3.224 36.712 A A 5 6 0.608 B B 8 7 3.271 0.383 0.603 -0.093 AA_DA5DA6:DT7DT8_BB 4 -2.444 3.883 36.631 -0.199 -1.289 3.552 35.471 A A 6 7 5.018 B B 7 6 3.582 3.052 -0.721 -0.608 AA_DA6DG7:DC6DT7_BB 5 -1.987 3.267 35.290 -1.486 0.865 2.858 29.258 A A 7 8 18.585 B B 6 5 3.150 9.201 -0.256 -0.456 AA_DG7DT8:DA5DC6_BB 6 -4.305 8.697 27.474 -2.793 -0.378 3.306 34.746 A A 8 9 8.324 B B 5 4 3.444 4.955 -0.463 -0.671 AA_DT8DG9:DC4DA5_BB 7 0.822 -1.381 34.392 -1.909 0.906 3.018 31.038 A A 9 10 12.746 B B 4 3 3.253 6.761 0.053 -0.685 AA_DG9DT10:DA3DC4_BB 8 -2.538 4.785 30.206 -2.543 -0.574 3.321 36.020 A A 10 11 -0.184 B B 3 2 3.291 -0.113 0.438 -0.281 AA_DT10DT11:DA2DA3_BB 9 4.173 -6.762 35.785 -0.437 -0.107 3.193 29.478 A A 11 12 7.331 B B 2 1 3.254 3.718 -0.073 -0.199 AA_DT11DC12:DG1DA2_BB 10 2.003 -3.950 29.180 -1.176 0.567 3.566 37.783 D D 1 2 -3.006 E E 12 11 3.531 -1.945 -0.452 -0.533 DD_DA1DG2:DT11DT12_EE 11 -1.326 2.048 37.712 -0.550 0.513 3.336 33.567 D D 2 3 -2.727 E E 11 10 3.297 -1.574 -0.654 -0.520 DD_DG2DT3:DA10DT11_EE 12 -1.075 1.862 33.515 -0.640 0.954 3.235 34.729 D D 3 4 0.489 E E 10 9 3.102 0.292 1.375 1.748 DD_DT3DC4:DG9DA10_EE 13 3.491 -5.859 34.557 2.886 -1.785 3.417 33.850 D D 4 5 5.283 E E 9 8 3.257 3.071 -0.780 1.563 DD_DC4DA5:DT8DG9_EE 14 -1.737 2.989 33.671 2.178 1.054 3.284 34.661 D D 5 6 -1.131 E E 8 7 3.279 -0.673 0.590 -0.242 DD_DA5DA6:DT7DT8_EE 15 0.060 -0.101 34.655 -0.302 -0.980 3.288 36.051 D D 6 7 9.858 E E 7 6 3.478 6.071 -0.407 -0.985 DD_DA6DG7:DC6DT7_EE 16 -1.970 3.200 35.500 -2.489 0.367 2.921 28.498 D D 7 8 14.017 E E 6 5 3.174 6.823 -0.138 -0.683 DD_DG7DT8:DA5DC6_EE 17 -3.041 6.248 27.521 -2.866 -0.378 3.332 38.428 D D 8 9 6.919 E E 5 4 3.377 4.544 -0.495 -0.145 DD_DT8DG9:DC4DA5_EE 18 0.504 -0.767 38.166 -0.802 0.817 3.020 32.441 D D 9 10 15.478 E E 4 3 3.279 8.544 0.042 -0.539 DD_DG9DT10:DA3DC4_EE 19 -2.206 3.996 31.249 -2.438 -0.456 3.302 36.218 D D 10 11 2.248 E E 3 2 3.292 1.393 0.364 -0.188 DD_DT10DT11:DA2DA3_EE 20 4.968 -8.017 35.861 -0.500 0.122 3.185 31.631 D D 11 12 9.307 E E 2 1 3.262 5.051 0.075 -0.239 DD_DT11DC12:DG1DA2_EE 21 1.391 -2.564 31.205 -1.365 0.117 repository Initial release 1 0 2026-05-20 Germany German Research Foundation (DFG) FOR 2841 "Beyond the exome" Poland Polish National Science Centre 3033/44/C/NZ1/00085 mmalecka@ibch.poznan.pl 0000-0001-8339-3230 Maria Malecka Z principal investigator/group leader N PDBE Y PDBE 2026-01-29 REL REL 1 A O HOH 144 6.40 1 A O HOH 145 8.02 1 C O HOH 389 5.93 1 D O HOH 156 6.42 HOH water 9606 Homo sapiens sample 1 12 9606 Homo sapiens sample 1 11 9606 Homo sapiens sample 1 12 N 1FTT PDB experimental model HOH 196 5 HOH HOH 101 A HOH 192 5 HOH HOH 102 A HOH 81 5 HOH HOH 103 A HOH 105 5 HOH HOH 104 A HOH 66 5 HOH HOH 105 A HOH 256 5 HOH HOH 106 A HOH 46 5 HOH HOH 107 A HOH 23 5 HOH HOH 108 A HOH 157 5 HOH HOH 109 A HOH 6 5 HOH HOH 110 A HOH 77 5 HOH HOH 111 A HOH 21 5 HOH HOH 112 A HOH 135 5 HOH HOH 113 A HOH 24 5 HOH HOH 114 A HOH 11 5 HOH HOH 115 A HOH 170 5 HOH HOH 116 A HOH 12 5 HOH HOH 117 A HOH 277 5 HOH HOH 118 A HOH 78 5 HOH HOH 119 A HOH 145 5 HOH HOH 120 A HOH 118 5 HOH HOH 121 A HOH 289 5 HOH HOH 122 A HOH 3 5 HOH HOH 123 A HOH 172 5 HOH HOH 124 A HOH 98 5 HOH HOH 125 A HOH 132 5 HOH HOH 126 A HOH 104 5 HOH HOH 127 A HOH 168 5 HOH HOH 128 A HOH 294 5 HOH HOH 129 A HOH 275 5 HOH HOH 130 A HOH 143 5 HOH HOH 131 A HOH 37 5 HOH HOH 132 A HOH 232 5 HOH HOH 133 A HOH 84 5 HOH HOH 134 A HOH 142 5 HOH HOH 135 A HOH 292 5 HOH HOH 136 A HOH 286 5 HOH HOH 137 A HOH 108 5 HOH HOH 138 A HOH 295 5 HOH HOH 139 A HOH 54 5 HOH HOH 140 A HOH 251 5 HOH HOH 141 A HOH 293 5 HOH HOH 142 A HOH 179 5 HOH HOH 143 A HOH 296 5 HOH HOH 144 A HOH 245 5 HOH HOH 145 A HOH 339 5 HOH HOH 101 B HOH 271 5 HOH HOH 102 B HOH 127 5 HOH HOH 103 B HOH 347 5 HOH HOH 104 B HOH 181 5 HOH HOH 105 B HOH 101 5 HOH HOH 106 B HOH 72 5 HOH HOH 107 B HOH 5 5 HOH HOH 108 B HOH 120 5 HOH HOH 109 B HOH 287 5 HOH HOH 110 B HOH 139 5 HOH HOH 111 B HOH 85 5 HOH HOH 112 B HOH 215 5 HOH HOH 113 B HOH 9 5 HOH HOH 114 B HOH 32 5 HOH HOH 115 B HOH 243 5 HOH HOH 116 B HOH 73 5 HOH HOH 117 B HOH 190 5 HOH HOH 118 B HOH 64 5 HOH HOH 119 B HOH 201 5 HOH HOH 120 B HOH 264 5 HOH HOH 121 B HOH 226 5 HOH HOH 122 B HOH 34 5 HOH HOH 123 B HOH 298 5 HOH HOH 124 B HOH 162 5 HOH HOH 125 B HOH 7 5 HOH HOH 126 B HOH 90 5 HOH HOH 127 B HOH 272 5 HOH HOH 128 B HOH 56 5 HOH HOH 129 B HOH 76 5 HOH HOH 130 B HOH 175 5 HOH HOH 131 B HOH 290 5 HOH HOH 132 B HOH 193 5 HOH HOH 133 B HOH 39 5 HOH HOH 134 B HOH 283 5 HOH HOH 135 B HOH 276 5 HOH HOH 136 B HOH 221 5 HOH HOH 137 B HOH 291 5 HOH HOH 138 B HOH 299 5 HOH HOH 139 B HOH 137 5 HOH HOH 140 B HOH 288 5 HOH HOH 141 B HOH 282 5 HOH HOH 142 B HOH 207 5 HOH HOH 143 B HOH 285 5 HOH HOH 144 B HOH 312 5 HOH HOH 145 B HOH 297 5 HOH HOH 146 B HOH 273 5 HOH HOH 301 C HOH 346 5 HOH HOH 302 C HOH 48 5 HOH HOH 303 C HOH 236 5 HOH HOH 304 C HOH 247 5 HOH HOH 305 C HOH 254 5 HOH HOH 306 C HOH 136 5 HOH HOH 307 C HOH 173 5 HOH HOH 308 C HOH 14 5 HOH HOH 309 C HOH 185 5 HOH HOH 310 C HOH 194 5 HOH HOH 311 C HOH 174 5 HOH HOH 312 C HOH 187 5 HOH HOH 313 C HOH 114 5 HOH HOH 314 C HOH 279 5 HOH HOH 315 C HOH 13 5 HOH HOH 316 C HOH 156 5 HOH HOH 317 C HOH 203 5 HOH HOH 318 C HOH 10 5 HOH HOH 319 C HOH 112 5 HOH HOH 320 C HOH 167 5 HOH HOH 321 C HOH 55 5 HOH HOH 322 C HOH 63 5 HOH HOH 323 C HOH 280 5 HOH HOH 324 C HOH 202 5 HOH HOH 325 C HOH 269 5 HOH HOH 326 C HOH 79 5 HOH HOH 327 C HOH 163 5 HOH HOH 328 C HOH 222 5 HOH HOH 329 C HOH 278 5 HOH HOH 330 C HOH 52 5 HOH HOH 331 C HOH 345 5 HOH HOH 332 C HOH 20 5 HOH HOH 333 C HOH 165 5 HOH HOH 334 C HOH 29 5 HOH HOH 335 C HOH 43 5 HOH HOH 336 C HOH 220 5 HOH HOH 337 C HOH 4 5 HOH HOH 338 C HOH 140 5 HOH HOH 339 C HOH 228 5 HOH HOH 340 C HOH 319 5 HOH HOH 341 C HOH 318 5 HOH HOH 342 C HOH 182 5 HOH HOH 343 C HOH 47 5 HOH HOH 344 C HOH 2 5 HOH HOH 345 C HOH 94 5 HOH HOH 346 C HOH 83 5 HOH HOH 347 C HOH 109 5 HOH HOH 348 C HOH 270 5 HOH HOH 349 C HOH 141 5 HOH HOH 350 C HOH 231 5 HOH HOH 351 C HOH 36 5 HOH HOH 352 C HOH 153 5 HOH HOH 353 C HOH 177 5 HOH HOH 354 C HOH 74 5 HOH HOH 355 C HOH 284 5 HOH HOH 356 C HOH 237 5 HOH HOH 357 C HOH 230 5 HOH HOH 358 C HOH 58 5 HOH HOH 359 C HOH 315 5 HOH HOH 360 C HOH 341 5 HOH HOH 361 C HOH 357 5 HOH HOH 362 C HOH 171 5 HOH HOH 363 C HOH 211 5 HOH HOH 364 C HOH 224 5 HOH HOH 365 C HOH 252 5 HOH HOH 366 C HOH 250 5 HOH HOH 367 C HOH 320 5 HOH HOH 368 C HOH 51 5 HOH HOH 369 C HOH 317 5 HOH HOH 370 C HOH 340 5 HOH HOH 371 C HOH 96 5 HOH HOH 372 C HOH 281 5 HOH HOH 373 C HOH 95 5 HOH HOH 374 C HOH 200 5 HOH HOH 375 C HOH 313 5 HOH HOH 376 C HOH 87 5 HOH HOH 377 C HOH 59 5 HOH HOH 378 C HOH 111 5 HOH HOH 379 C HOH 314 5 HOH HOH 380 C HOH 257 5 HOH HOH 381 C HOH 234 5 HOH HOH 382 C HOH 199 5 HOH HOH 383 C HOH 316 5 HOH HOH 384 C HOH 248 5 HOH HOH 385 C HOH 321 5 HOH HOH 386 C HOH 86 5 HOH HOH 387 C HOH 138 5 HOH HOH 388 C HOH 244 5 HOH HOH 389 C HOH 62 5 HOH HOH 101 D HOH 65 5 HOH HOH 102 D HOH 67 5 HOH HOH 103 D HOH 15 5 HOH HOH 104 D HOH 183 5 HOH HOH 105 D HOH 235 5 HOH HOH 106 D HOH 134 5 HOH HOH 107 D HOH 161 5 HOH HOH 108 D HOH 33 5 HOH HOH 109 D HOH 18 5 HOH HOH 110 D HOH 26 5 HOH HOH 111 D HOH 119 5 HOH HOH 112 D HOH 128 5 HOH HOH 113 D HOH 217 5 HOH HOH 114 D HOH 16 5 HOH HOH 115 D HOH 22 5 HOH HOH 116 D HOH 69 5 HOH HOH 117 D HOH 45 5 HOH HOH 118 D HOH 322 5 HOH HOH 119 D HOH 131 5 HOH HOH 120 D HOH 133 5 HOH HOH 121 D HOH 82 5 HOH HOH 122 D HOH 225 5 HOH HOH 123 D HOH 218 5 HOH HOH 124 D HOH 123 5 HOH HOH 125 D HOH 38 5 HOH HOH 126 D HOH 206 5 HOH HOH 127 D HOH 42 5 HOH HOH 128 D HOH 144 5 HOH HOH 129 D HOH 259 5 HOH HOH 130 D HOH 359 5 HOH HOH 131 D HOH 103 5 HOH HOH 132 D HOH 336 5 HOH HOH 133 D HOH 68 5 HOH HOH 134 D HOH 323 5 HOH HOH 135 D HOH 310 5 HOH HOH 136 D HOH 146 5 HOH HOH 137 D HOH 91 5 HOH HOH 138 D HOH 229 5 HOH HOH 139 D HOH 152 5 HOH HOH 140 D HOH 115 5 HOH HOH 141 D HOH 267 5 HOH HOH 142 D HOH 92 5 HOH HOH 143 D HOH 350 5 HOH HOH 144 D HOH 210 5 HOH HOH 145 D HOH 266 5 HOH HOH 146 D HOH 355 5 HOH HOH 147 D HOH 240 5 HOH HOH 148 D HOH 311 5 HOH HOH 149 D HOH 246 5 HOH HOH 150 D HOH 324 5 HOH HOH 151 D HOH 301 5 HOH HOH 152 D HOH 102 5 HOH HOH 153 D HOH 148 5 HOH HOH 154 D HOH 300 5 HOH HOH 155 D HOH 262 5 HOH HOH 156 D HOH 130 5 HOH HOH 101 E HOH 40 5 HOH HOH 102 E HOH 227 5 HOH HOH 103 E HOH 164 5 HOH HOH 104 E HOH 353 5 HOH HOH 105 E HOH 191 5 HOH HOH 106 E HOH 31 5 HOH HOH 107 E HOH 169 5 HOH HOH 108 E HOH 351 5 HOH HOH 109 E HOH 17 5 HOH HOH 110 E HOH 60 5 HOH HOH 111 E HOH 126 5 HOH HOH 112 E HOH 116 5 HOH HOH 113 E HOH 49 5 HOH HOH 114 E HOH 258 5 HOH HOH 115 E HOH 150 5 HOH HOH 116 E HOH 343 5 HOH HOH 117 E HOH 198 5 HOH HOH 118 E HOH 208 5 HOH HOH 119 E HOH 233 5 HOH HOH 120 E HOH 309 5 HOH HOH 121 E HOH 176 5 HOH HOH 122 E HOH 25 5 HOH HOH 123 E HOH 19 5 HOH HOH 124 E HOH 80 5 HOH HOH 125 E HOH 27 5 HOH HOH 126 E HOH 342 5 HOH HOH 127 E HOH 166 5 HOH HOH 128 E HOH 242 5 HOH HOH 129 E HOH 223 5 HOH HOH 130 E HOH 362 5 HOH HOH 131 E HOH 358 5 HOH HOH 132 E HOH 160 5 HOH HOH 133 E HOH 147 5 HOH HOH 134 E HOH 35 5 HOH HOH 135 E HOH 349 5 HOH HOH 136 E HOH 71 5 HOH HOH 137 E HOH 363 5 HOH HOH 138 E HOH 253 5 HOH HOH 139 E HOH 364 5 HOH HOH 140 E HOH 354 5 HOH HOH 141 E HOH 352 5 HOH HOH 142 E HOH 204 5 HOH HOH 143 E HOH 268 5 HOH HOH 301 F HOH 265 5 HOH HOH 302 F HOH 329 5 HOH HOH 303 F HOH 50 5 HOH HOH 304 F HOH 327 5 HOH HOH 305 F HOH 129 5 HOH HOH 306 F HOH 205 5 HOH HOH 307 F HOH 335 5 HOH HOH 308 F HOH 260 5 HOH HOH 309 F HOH 117 5 HOH HOH 310 F HOH 337 5 HOH HOH 311 F HOH 8 5 HOH HOH 312 F HOH 97 5 HOH HOH 313 F HOH 124 5 HOH HOH 314 F HOH 241 5 HOH HOH 315 F HOH 30 5 HOH HOH 316 F HOH 331 5 HOH HOH 317 F HOH 113 5 HOH HOH 318 F HOH 356 5 HOH HOH 319 F HOH 189 5 HOH HOH 320 F HOH 159 5 HOH HOH 321 F HOH 212 5 HOH HOH 322 F HOH 155 5 HOH HOH 323 F HOH 154 5 HOH HOH 324 F HOH 255 5 HOH HOH 325 F HOH 61 5 HOH HOH 326 F HOH 93 5 HOH HOH 327 F HOH 214 5 HOH HOH 328 F HOH 75 5 HOH HOH 329 F HOH 110 5 HOH HOH 330 F HOH 325 5 HOH HOH 331 F HOH 28 5 HOH HOH 332 F HOH 151 5 HOH HOH 333 F HOH 88 5 HOH HOH 334 F HOH 44 5 HOH HOH 335 F HOH 106 5 HOH HOH 336 F HOH 107 5 HOH HOH 337 F HOH 338 5 HOH HOH 338 F HOH 53 5 HOH HOH 339 F HOH 249 5 HOH HOH 340 F HOH 122 5 HOH HOH 341 F HOH 99 5 HOH HOH 342 F HOH 178 5 HOH HOH 343 F HOH 216 5 HOH HOH 344 F HOH 305 5 HOH HOH 345 F HOH 326 5 HOH HOH 346 F HOH 303 5 HOH HOH 347 F HOH 238 5 HOH HOH 348 F HOH 89 5 HOH HOH 349 F HOH 344 5 HOH HOH 350 F HOH 239 5 HOH HOH 351 F HOH 100 5 HOH HOH 352 F HOH 333 5 HOH HOH 353 F HOH 149 5 HOH HOH 354 F HOH 334 5 HOH HOH 355 F HOH 308 5 HOH HOH 356 F HOH 365 5 HOH HOH 357 F HOH 360 5 HOH HOH 358 F HOH 261 5 HOH HOH 359 F HOH 263 5 HOH HOH 360 F HOH 307 5 HOH HOH 361 F HOH 332 5 HOH HOH 362 F HOH 330 5 HOH HOH 363 F HOH 361 5 HOH HOH 364 F HOH 304 5 HOH HOH 365 F HOH 302 5 HOH HOH 366 F HOH 306 5 HOH HOH 367 F HOH 274 5 HOH HOH 368 F HOH 348 5 HOH HOH 369 F HOH 328 5 HOH HOH 370 F n 1 1 A DG 2 n 2 DG 2 A DT 3 n 3 DT 3 A DC 4 n 4 DC 4 A DA 5 n 5 DA 5 A DA 6 n 6 DA 6 A DG 7 n 7 DG 7 A DT 8 n 8 DT 8 A DG 9 n 9 DG 9 A DT 10 n 10 DT 10 A DT 11 n 11 DT 11 A DC 12 n 12 DC 12 A DG 1 n 1 DG 1 B DA 2 n 2 DA 2 B DA 3 n 3 DA 3 B DC 4 n 4 DC 4 B DA 5 n 5 DA 5 B DC 6 n 6 DC 6 B DT 7 n 7 DT 7 B DT 8 n 8 DT 8 B DG 9 n 9 DG 9 B DA 10 n 10 DA 10 B DC 11 n 11 DC 11 B n 1 160 C n 2 161 C n 3 162 C n 4 163 C ARG 164 n 5 ARG 164 C ARG 165 n 6 ARG 165 C VAL 166 n 7 VAL 166 C LEU 167 n 8 LEU 167 C PHE 168 n 9 PHE 168 C SER 169 n 10 SER 169 C GLN 170 n 11 GLN 170 C ALA 171 n 12 ALA 171 C GLN 172 n 13 GLN 172 C VAL 173 n 14 VAL 173 C TYR 174 n 15 TYR 174 C GLU 175 n 16 GLU 175 C LEU 176 n 17 LEU 176 C GLU 177 n 18 GLU 177 C ARG 178 n 19 ARG 178 C ARG 179 n 20 ARG 179 C PHE 180 n 21 PHE 180 C LYS 181 n 22 LYS 181 C GLN 182 n 23 GLN 182 C GLN 183 n 24 GLN 183 C LYS 184 n 25 LYS 184 C TYR 185 n 26 TYR 185 C LEU 186 n 27 LEU 186 C SER 187 n 28 SER 187 C ALA 188 n 29 ALA 188 C PRO 189 n 30 PRO 189 C GLU 190 n 31 GLU 190 C ARG 191 n 32 ARG 191 C GLU 192 n 33 GLU 192 C HIS 193 n 34 HIS 193 C LEU 194 n 35 LEU 194 C ALA 195 n 36 ALA 195 C SER 196 n 37 SER 196 C MET 197 n 38 MET 197 C ILE 198 n 39 ILE 198 C HIS 199 n 40 HIS 199 C LEU 200 n 41 LEU 200 C THR 201 n 42 THR 201 C PRO 202 n 43 PRO 202 C THR 203 n 44 THR 203 C GLN 204 n 45 GLN 204 C VAL 205 n 46 VAL 205 C LYS 206 n 47 LYS 206 C ILE 207 n 48 ILE 207 C TRP 208 n 49 TRP 208 C PHE 209 n 50 PHE 209 C GLN 210 n 51 GLN 210 C ASN 211 n 52 ASN 211 C HIS 212 n 53 HIS 212 C ARG 213 n 54 ARG 213 C TYR 214 n 55 TYR 214 C LYS 215 n 56 LYS 215 C MET 216 n 57 MET 216 C LYS 217 n 58 LYS 217 C ARG 218 n 59 ARG 218 C GLN 219 n 60 GLN 219 C DA 1 n 1 DA 1 D DG 2 n 2 DG 2 D DT 3 n 3 DT 3 D DC 4 n 4 DC 4 D DA 5 n 5 DA 5 D DA 6 n 6 DA 6 D DG 7 n 7 DG 7 D DT 8 n 8 DT 8 D DG 9 n 9 DG 9 D DT 10 n 10 DT 10 D DT 11 n 11 DT 11 D DC 12 n 12 DC 12 D DG 1 n 1 DG 1 E DA 2 n 2 DA 2 E DA 3 n 3 DA 3 E DC 4 n 4 DC 4 E DA 5 n 5 DA 5 E DC 6 n 6 DC 6 E DT 7 n 7 DT 7 E DT 8 n 8 DT 8 E DG 9 n 9 DG 9 E DA 10 n 10 DA 10 E DT 11 n 11 DT 11 E DT 12 n 12 DT 12 E GLY 160 n 1 GLY 160 F ARG 161 n 2 ARG 161 F ARG 162 n 3 ARG 162 F LYS 163 n 4 LYS 163 F ARG 164 n 5 ARG 164 F ARG 165 n 6 ARG 165 F VAL 166 n 7 VAL 166 F LEU 167 n 8 LEU 167 F PHE 168 n 9 PHE 168 F SER 169 n 10 SER 169 F GLN 170 n 11 GLN 170 F ALA 171 n 12 ALA 171 F GLN 172 n 13 GLN 172 F VAL 173 n 14 VAL 173 F TYR 174 n 15 TYR 174 F GLU 175 n 16 GLU 175 F LEU 176 n 17 LEU 176 F GLU 177 n 18 GLU 177 F ARG 178 n 19 ARG 178 F ARG 179 n 20 ARG 179 F PHE 180 n 21 PHE 180 F LYS 181 n 22 LYS 181 F GLN 182 n 23 GLN 182 F GLN 183 n 24 GLN 183 F LYS 184 n 25 LYS 184 F TYR 185 n 26 TYR 185 F LEU 186 n 27 LEU 186 F SER 187 n 28 SER 187 F ALA 188 n 29 ALA 188 F PRO 189 n 30 PRO 189 F GLU 190 n 31 GLU 190 F ARG 191 n 32 ARG 191 F GLU 192 n 33 GLU 192 F HIS 193 n 34 HIS 193 F LEU 194 n 35 LEU 194 F ALA 195 n 36 ALA 195 F SER 196 n 37 SER 196 F MET 197 n 38 MET 197 F ILE 198 n 39 ILE 198 F HIS 199 n 40 HIS 199 F LEU 200 n 41 LEU 200 F THR 201 n 42 THR 201 F PRO 202 n 43 PRO 202 F THR 203 n 44 THR 203 F GLN 204 n 45 GLN 204 F VAL 205 n 46 VAL 205 F LYS 206 n 47 LYS 206 F ILE 207 n 48 ILE 207 F TRP 208 n 49 TRP 208 F PHE 209 n 50 PHE 209 F GLN 210 n 51 GLN 210 F ASN 211 n 52 ASN 211 F HIS 212 n 53 HIS 212 F ARG 213 n 54 ARG 213 F TYR 214 n 55 TYR 214 F LYS 215 n 56 LYS 215 F MET 216 n 57 MET 216 F LYS 217 n 58 LYS 217 F ARG 218 n 59 ARG 218 F GLN 219 n 60 GLN 219 F author_and_software_defined_assembly PISA 3 trimeric author_and_software_defined_assembly PISA 3 trimeric gel filtration gel filtration 2640 -15 7240 3270 -15 7680 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A P DC 4 A A P DC 4 0 Y 1 A OP1 DC 4 A A OP1 DC 4 0 Y 1 A OP2 DC 4 A A OP2 DC 4 0 Y 1 A O5' DC 4 A A O5' DC 4 0 Y 1 A C5' DC 4 A A C5' DC 4 0 Y 1 A C4' DC 4 A A C4' DC 4 0 Y 1 A O4' DC 4 A A O4' DC 4 0 Y 1 A C3' DC 4 A A C3' DC 4 0 Y 1 A O3' DC 4 A A O3' DC 4 0 Y 1 A C2' DC 4 A A C2' DC 4 0 Y 1 A C1' DC 4 A A C1' DC 4 0 Y 1 A N1 DC 4 A A N1 DC 4 0 Y 1 A C2 DC 4 A A C2 DC 4 0 Y 1 A O2 DC 4 A A O2 DC 4 0 Y 1 A N3 DC 4 A A N3 DC 4 0 Y 1 A C4 DC 4 A A C4 DC 4 0 Y 1 A N4 DC 4 A A N4 DC 4 0 Y 1 A C5 DC 4 A A C5 DC 4 0 Y 1 A C6 DC 4 A A C6 DC 4 0 Y 1 A DA 1 A DA 1 1 Y 1 C GLY 160 C GLY 1 1 Y 1 C ARG 161 C ARG 2 1 Y 1 C ARG 162 C ARG 3 1 Y 1 C LYS 163 C LYS 4 1 Y 1 -4.60 0.70 108.00 103.40 A A A O4' C1' N1 DT DT DT 3 3 3 N 1 2.90 0.30 108.30 111.20 B B B O4' C1' N9 DA DA DA 2 2 2 N 1 7.84 1.20 119.70 127.54 B B B C3' O3' P DA DA DC 3 3 4 B Y 1 2.51 0.30 108.30 110.81 B B B O4' C1' N1 DC DC DC 6 6 6 N 1 2.12 0.30 108.30 110.42 E E E O4' C1' N1 DC DC DC 6 6 6 N 1 B B O3' C3' DA DA 2 2 -0.071 0.006 1.419 1.348 N 1 B B O3' C3' DC DC 4 4 -0.052 0.006 1.419 1.367 B B N 1 E E O3' C3' DA DA 2 2 -0.056 0.006 1.419 1.363 N 0.2004 0.1539 0.1563 1.50 36.72 2273 45453 5.00 98.79 0.20 1 FREE R-VALUE 1.36 MOLECULAR REPLACEMENT 21.16 0.90 1.10 ML FLAT BULK SOLVENT MODEL 1.50 36.72 349 2316 0 938 1029 0.009 2301 1.040 3325 26.173 1042 0.067 350 0.012 251 0.3832 0.3035 1.53 137 2597 96.00 0.2994 0.2472 1.57 138 2625 97.00 0.2811 0.1847 1.61 141 2682 99.00 0.2239 0.1565 1.65 140 2656 97.00 0.2227 0.1555 1.70 138 2642 97.00 0.1942 0.1524 1.75 141 2677 99.00 0.2524 0.1658 1.82 139 2651 99.00 0.2360 0.1663 1.89 144 2723 99.00 0.2253 0.1558 1.97 142 2699 99.00 0.2138 0.1652 2.08 142 2710 100.00 0.2149 0.1660 2.21 144 2726 100.00 0.2231 0.1675 2.38 142 2706 100.00 0.2150 0.1652 2.62 146 2759 100.00 0.2441 0.1751 3.00 144 2746 100.00 0.1796 0.1379 3.77 145 2739 99.00 0.1487 0.1293 36.72 150 2842 100.00 1.3 36.73 9U18 69003 0.994 0.049 0.063 1 5.79 6.7 98.2 1.27 1.30 1.38 5502 0.21 1.796 1 0.733 1.38 1.47 5422 0.418 1.036 1 0.319 1.47 1.59 5029 0.785 0.45 1 0.121 1.59 1.74 4482 0.978 0.169 1 0.091 1.74 1.95 4038 0.978 0.125 1 0.058 1.95 2.25 3400 0.989 0.079 1 0.045 2.25 2.75 2731 0.993 0.059 1 0.044 2.75 3.88 1882 0.993 0.055 1 refinement PHENIX ("2.0_5885": ???) data reduction XDS data extraction PDB_EXTRACT data scaling Aimless phasing PHENIX N Crystal structure of the NKX2.1 homeodomain in complex with a 12-bp DNA duplex containing a CAAG motif 1 N N 2 N N 3 N N 1 N N 4 N N 3 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N C SER 169 C SER 10 HELX_P C GLN 183 C GLN 24 1 AA1 15 C SER 187 C SER 28 HELX_P C HIS 199 C HIS 40 1 AA2 13 C THR 201 C THR 42 HELX_P C GLN 219 C GLN 60 1 AA3 19 F SER 169 F SER 10 HELX_P F GLN 183 F GLN 24 1 AA4 15 F SER 187 F SER 28 HELX_P F HIS 199 F HIS 40 1 AA5 13 F THR 201 F THR 42 HELX_P F GLN 219 F GLN 60 1 AA6 19 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 11 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 11 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 11 B N4 DC 11 1_555 hydrog WATSON-CRICK A DT 3 A N3 DT 3 1_555 B DA 10 B N1 DA 10 1_555 hydrog WATSON-CRICK A DT 3 A O4 DT 3 1_555 B DA 10 B N6 DA 10 1_555 hydrog WATSON-CRICK A A DC 4 A N3 DC 4 1_555 B DG 9 B N1 DG 9 1_555 hydrog WATSON-CRICK B A DC 4 A N3 DC 4 1_555 B DG 9 B N1 DG 9 1_555 hydrog WATSON-CRICK A A DC 4 A N4 DC 4 1_555 B DG 9 B O6 DG 9 1_555 hydrog WATSON-CRICK B A DC 4 A N4 DC 4 1_555 B DG 9 B O6 DG 9 1_555 hydrog WATSON-CRICK A A DC 4 A O2 DC 4 1_555 B DG 9 B N2 DG 9 1_555 hydrog WATSON-CRICK B A DC 4 A O2 DC 4 1_555 B DG 9 B N2 DG 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 8 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 8 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 7 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 7 B O4 DT 7 1_555 hydrog WATSON-CRICK A DG 7 A N1 DG 7 1_555 B DC 6 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 7 A N2 DG 7 1_555 B DC 6 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 7 A O6 DG 7 1_555 B DC 6 B N4 DC 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 5 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 5 B N6 DA 5 1_555 hydrog WATSON-CRICK A A DG 9 A N1 DG 9 1_555 B DC 4 B N3 DC 4 1_555 hydrog WATSON-CRICK B A DG 9 A N1 DG 9 1_555 B DC 4 B N3 DC 4 1_555 hydrog WATSON-CRICK A A DG 9 A N2 DG 9 1_555 B DC 4 B O2 DC 4 1_555 hydrog WATSON-CRICK B A DG 9 A N2 DG 9 1_555 B DC 4 B O2 DC 4 1_555 hydrog WATSON-CRICK A A DG 9 A O6 DG 9 1_555 B DC 4 B N4 DC 4 1_555 hydrog WATSON-CRICK B A DG 9 A O6 DG 9 1_555 B DC 4 B N4 DC 4 1_555 hydrog WATSON-CRICK A DT 10 A N3 DT 10 1_555 B DA 3 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 10 A O4 DT 10 1_555 B DA 3 B N6 DA 3 1_555 hydrog WATSON-CRICK A DT 11 A N3 DT 11 1_555 B DA 2 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 11 A O4 DT 11 1_555 B DA 2 B N6 DA 2 1_555 hydrog WATSON-CRICK A DC 12 A N3 DC 12 1_555 B DG 1 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 12 A N4 DC 12 1_555 B DG 1 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 12 A O2 DC 12 1_555 B DG 1 B N2 DG 1 1_555 hydrog WATSON-CRICK D DA 1 D N1 DA 1 1_555 E DT 12 E N3 DT 12 1_555 hydrog WATSON-CRICK D DA 1 D N6 DA 1 1_555 E DT 12 E O4 DT 12 1_555 hydrog TYPE_28_PAIR D DG 2 D N1 DG 2 1_555 E DT 11 E O2 DT 11 1_555 hydrog TYPE_28_PAIR D DG 2 D O6 DG 2 1_555 E DT 11 E N3 DT 11 1_555 hydrog WATSON-CRICK D DT 3 D N3 DT 3 1_555 E DA 10 E N1 DA 10 1_555 hydrog WATSON-CRICK D DT 3 D O4 DT 3 1_555 E DA 10 E N6 DA 10 1_555 hydrog WATSON-CRICK D DC 4 D N3 DC 4 1_555 E DG 9 E N1 DG 9 1_555 hydrog WATSON-CRICK D DC 4 D N4 DC 4 1_555 E DG 9 E O6 DG 9 1_555 hydrog WATSON-CRICK D DC 4 D O2 DC 4 1_555 E DG 9 E N2 DG 9 1_555 hydrog WATSON-CRICK A D DA 5 D N1 DA 5 1_555 E DT 8 E N3 DT 8 1_555 hydrog WATSON-CRICK B D DA 5 D N1 DA 5 1_555 E DT 8 E N3 DT 8 1_555 hydrog WATSON-CRICK A D DA 5 D N6 DA 5 1_555 E DT 8 E O4 DT 8 1_555 hydrog WATSON-CRICK B D DA 5 D N6 DA 5 1_555 E DT 8 E O4 DT 8 1_555 hydrog WATSON-CRICK A D DA 6 D N1 DA 6 1_555 E DT 7 E N3 DT 7 1_555 hydrog WATSON-CRICK B D DA 6 D N1 DA 6 1_555 E DT 7 E N3 DT 7 1_555 hydrog WATSON-CRICK A D DA 6 D N6 DA 6 1_555 E DT 7 E O4 DT 7 1_555 hydrog WATSON-CRICK B D DA 6 D N6 DA 6 1_555 E DT 7 E O4 DT 7 1_555 hydrog WATSON-CRICK D DG 7 D N1 DG 7 1_555 E DC 6 E N3 DC 6 1_555 hydrog WATSON-CRICK D DG 7 D N2 DG 7 1_555 E DC 6 E O2 DC 6 1_555 hydrog WATSON-CRICK D DG 7 D O6 DG 7 1_555 E DC 6 E N4 DC 6 1_555 hydrog WATSON-CRICK D DT 8 D N3 DT 8 1_555 E DA 5 E N1 DA 5 1_555 hydrog WATSON-CRICK D DT 8 D O4 DT 8 1_555 E DA 5 E N6 DA 5 1_555 hydrog WATSON-CRICK B D DG 9 D N1 DG 9 1_555 E DC 4 E N3 DC 4 1_555 hydrog WATSON-CRICK A D DG 9 D N1 DG 9 1_555 E DC 4 E N3 DC 4 1_555 hydrog WATSON-CRICK B D DG 9 D N2 DG 9 1_555 E DC 4 E O2 DC 4 1_555 hydrog WATSON-CRICK A D DG 9 D N2 DG 9 1_555 E DC 4 E O2 DC 4 1_555 hydrog WATSON-CRICK B D DG 9 D O6 DG 9 1_555 E DC 4 E N4 DC 4 1_555 hydrog WATSON-CRICK A D DG 9 D O6 DG 9 1_555 E DC 4 E N4 DC 4 1_555 hydrog WATSON-CRICK D DT 10 D N3 DT 10 1_555 E DA 3 E N1 DA 3 1_555 hydrog WATSON-CRICK D DT 10 D O4 DT 10 1_555 E DA 3 E N6 DA 3 1_555 hydrog WATSON-CRICK D DT 11 D N3 DT 11 1_555 E DA 2 E N1 DA 2 1_555 hydrog WATSON-CRICK D DT 11 D O4 DT 11 1_555 E DA 2 E N6 DA 2 1_555 hydrog WATSON-CRICK D DC 12 D N3 DC 12 1_555 E DG 1 E N1 DG 1 1_555 hydrog WATSON-CRICK D DC 12 D N4 DC 12 1_555 E DG 1 E O6 DG 1 1_555 hydrog WATSON-CRICK D DC 12 D O2 DC 12 1_555 E DG 1 E N2 DG 1 1_555 TRANSCRIPTION Nkx2.1, homeobox, transcription factor, TRANSCRIPTION 9U18 PDB 1 1 9U18 9U18 PDB 2 1 9U18 NKX21_HUMAN UNP 3 161 P43699 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 9U18 PDB 4 1 9U18 1 12 9U18 1 12 9U18 A 1 1 12 1 11 9U18 1 11 9U18 B 2 1 11 161 219 9U18 161 219 P43699 C 3 2 60 1 12 9U18 1 12 9U18 D 1 1 12 1 12 9U18 1 12 9U18 E 4 1 12 161 219 9U18 161 219 P43699 F 3 2 60 3 expression tag GLY 160 9U18 C P43699 UNP 1 6 expression tag GLY 160 9U18 F P43699 UNP 1 5 C 1 2 1