0.008911 0.000000 0.000000 0.000000 0.008911 0.000000 0.000000 0.000000 0.008911 0.00000 0.00000 0.00000 6 6 2.3103 1.0201 1.5888 0.8651 20.8439 10.2075 0.5687 51.6512 0.2156 1 1 0.4930 0.3229 0.1402 0.0408 10.5109 26.1257 3.1424 57.7997 0.0030 19 19 8.2190 7.4402 1.0520 0.8659 12.7949 0.7748 213.1870 41.6841 1.6926 7 7 12.2220 3.1346 2.0141 1.1672 0.0057 9.8933 28.9975 0.5826 -11.5379 8 8 3.0487 2.2870 1.5464 0.8671 13.2771 5.7011 0.3239 32.9089 0.2508 15 15 6.4348 4.1793 1.7801 1.4909 1.9067 27.1570 0.5260 68.1645 1.2679 16 16 6.9054 5.2035 1.4379 1.5863 1.4679 22.2151 0.2536 56.1720 1.0495 0000-0002-1655-525X Darriere, T. 0000-0002-0385-7777 Ruiz, F.M. Cuevas, C. 0000-0001-5097-731X Fernandez-Tornero, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 48 90 90 90 112.224 112.224 112.224 C41 H44 N4 O10 S 784.874 Lurbinectedin non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer C10 H26 N4 202.340 SPERMINE non-polymer N 1 N C N 2 N O Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N N Y 8 N C Y 9 N C Y 10 N C Y 11 N C N 12 N C N 13 N C N 14 N N N 15 R C N 16 N C N 17 N S N 18 R C Y 19 N C Y 20 N C N 21 N O N 22 N C N 23 N C N 24 N O Y 25 N C N 26 N C Y 27 N C Y 28 N C Y 29 N C N 30 R C N 31 N C N 32 N O N 33 N C N 34 N O N 35 N N N 36 S C N 37 S C N 38 N C Y 39 N C Y 40 N C Y 41 N C N 42 N C Y 43 N C N 44 N O N 45 N C Y 46 N C N 47 N O Y 48 N C N 49 R C N 50 R C N 51 N N N 52 N C N 53 N O N 54 N C N 55 N O N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N O N 100 N H N 101 N O N 102 N P N 103 N O N 104 N O N 105 N O N 106 N C N 107 R C N 108 N O N 109 S C N 110 N O N 111 N C N 112 R C Y 113 N N Y 114 N C Y 115 N N Y 116 N C Y 117 N C N 118 N N Y 119 N N Y 120 N C Y 121 N N Y 122 N C N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N O N 138 N P N 139 N O N 140 N O N 141 N O N 142 N C N 143 R C N 144 N O N 145 S C N 146 N O N 147 N C N 148 R C N 149 N N N 150 N C N 151 N O N 152 N N N 153 N C N 154 N N N 155 N C N 156 N C N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N O N 172 N P N 173 N O N 174 N O N 175 N O N 176 N C N 177 R C N 178 N O N 179 S C N 180 N O N 181 N C N 182 R C Y 183 N N Y 184 N C Y 185 N N Y 186 N C N 187 N C N 188 N O N 189 N N N 190 N C N 191 N N N 192 N N Y 193 N C N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N O N 209 N P N 210 N O N 211 N O N 212 N O N 213 N C N 214 R C N 215 N O N 216 S C N 217 N O N 218 N C N 219 R C N 220 N N N 221 N C N 222 N O N 223 N N N 224 N C N 225 N O N 226 N C N 227 N C N 228 N C N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N O N 245 N H N 246 N H N 247 N K N 248 N N N 249 N C N 250 N C N 251 N C N 252 N N N 253 N C N 254 N C N 255 N C N 256 N C N 257 N N N 258 N C N 259 N C N 260 N C N 261 N N N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 1 N sing N 2 N sing Y 3 N doub Y 4 N sing Y 5 N sing Y 6 N doub Y 7 N doub Y 8 N sing Y 9 N sing Y 10 N sing N 11 N sing N 12 N sing N 13 N sing Y 14 N sing N 15 N sing Y 16 N doub N 17 N sing Y 18 N doub Y 19 N sing N 20 N sing N 21 N sing Y 22 N sing Y 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N doub N 33 N sing Y 34 N doub N 35 N sing Y 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing Y 52 N doub Y 53 N sing Y 54 N sing N 55 N sing N 56 N sing Y 57 N doub N 58 N sing Y 59 N doub N 60 N sing Y 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing Y 133 N sing Y 134 N sing Y 135 N doub N 136 N sing Y 137 N sing Y 138 N sing Y 139 N doub N 140 N sing Y 141 N doub N 142 N sing N 143 N sing Y 144 N sing Y 145 N doub N 146 N sing Y 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing Y 206 N sing Y 207 N sing Y 208 N doub N 209 N sing Y 210 N sing N 211 N sing Y 212 N doub N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing To Be Published 0353 The structures of ecteinascidins bound to DNA shed light on their mechanism of action 0000-0002-1655-525X 0000-0002-0385-7777 0000-0001-5097-731X 10.2210/pdb9t8e/pdb pdb_00009t8e 100 1 N PIXEL 2024-10-27 DECTRIS PILATUS3 6M SINGLE WAVELENGTH M x-ray 1 0.9793 1.0 XALOC ALBA 0.9793 SYNCHROTRON ALBA BEAMLINE XALOC 3045.004 DNA (5'-D(*CP*GP*AP*TP*GP*CP*AP*TP*CP*G)-3') 2 syn polymer 39.098 POTASSIUM ION 2 syn non-polymer 784.874 Lurbinectedin 1 syn non-polymer 202.340 SPERMINE 1 syn non-polymer 18.015 water 43 nat water no no (DC)(DG)(DA)(DT)(DG)(DC)(DA)(DT)(DC)(DG) CGATGCATCG A,B polydeoxyribonucleotide n n n n n n n n n n 1 VAPOR DIFFUSION, SITTING DROP 6.5 Sodium malonate, potassium chloride, lithium chloride, spermine 292 -13.507 1 19 A 1 B 10 -3.064 A_DC1:DG10_B 1 -4.438 0.330 0.399 -0.064 -21.238 1 19 A 2 B 9 2.583 A_DG2:DC9_B 2 -25.760 -0.270 -0.497 -0.227 -10.103 1 20 A 3 B 8 2.268 A_DA3:DT8_B 3 -11.536 -0.215 -0.350 -0.070 -5.190 1 20 A 4 B 7 1.761 A_DT4:DA7_B 4 -11.537 0.099 -0.325 -0.087 -3.153 1 19 A 5 B 6 -2.400 A_DG5:DC6_B 5 -4.241 0.028 -0.370 -0.190 -3.520 1 19 A 6 B 5 0.571 A_DC6:DG5_B 6 -8.046 0.386 0.034 -0.258 2.391 1 20 A 7 B 4 1.244 A_DA7:DT4_B 7 -18.171 0.042 -0.494 -0.146 11.951 1 20 A 8 B 3 -1.364 A_DT8:DA3_B 8 -16.924 0.168 -0.725 -0.232 10.597 1 19 A 9 B 2 -2.147 A_DC9:DG2_B 9 -11.646 0.328 -0.417 -0.338 7.244 1 19 A 10 B 1 -3.206 A_DG10:DC1_B 10 -7.123 0.023 0.262 -0.278 3.202 36.247 A A 1 2 22.464 B B 10 9 3.529 13.560 0.855 -0.490 AA_DC1DG2:DC9DG10_BB 1 7.266 -12.037 32.920 -2.848 -0.271 3.069 35.406 A A 2 3 10.568 B B 9 8 3.030 6.384 -0.107 0.508 AA_DG2DA3:DT8DC9_BB 2 -3.450 5.711 34.678 -0.050 -0.303 3.167 30.947 A A 3 4 1.989 B B 8 7 3.197 1.061 -0.114 -0.710 AA_DA3DT4:DA7DT8_BB 3 0.821 -1.540 30.919 -1.529 0.368 3.259 32.927 A A 4 5 19.709 B B 7 6 3.431 10.968 0.341 0.038 AA_DT4DG5:DC6DA7_BB 4 0.203 -0.365 31.093 -1.905 -0.565 3.377 38.789 A A 5 6 -1.050 B B 6 5 3.282 -0.696 -1.017 0.087 AA_DG5DC6:DG5DC6_BB 5 -4.733 7.143 38.504 0.218 0.941 3.185 31.678 A A 6 7 25.998 B B 5 4 3.349 13.695 0.178 0.382 AA_DC6DA7:DT4DG5_BB 6 4.473 -8.492 28.287 -1.974 0.548 2.966 32.918 A A 7 8 -0.344 B B 4 3 2.966 -0.195 -0.068 -0.489 AA_DA7DT8:DA3DT4_BB 7 0.997 -1.760 32.903 -0.832 0.274 3.696 36.397 A A 8 9 11.497 B B 3 2 3.463 7.112 0.646 1.265 AA_DT8DC9:DG2DA3_BB 8 5.490 -8.876 35.307 0.926 -0.185 3.758 35.770 A A 9 10 10.582 B B 2 1 3.483 6.440 -1.078 1.172 AA_DC9DG10:DC1DG2_BB 9 -5.736 9.425 34.748 0.865 0.826 repository Initial release 1 0 2026-07-29 Spain Other private cftornero@cib.csic.es 0000-0001-5097-731X Carlos Fernandez-Tornero principal investigator/group leader N PDBE N PDBE 2025-11-12 REL REL A1JUE A1JUE SUBJECT OF INVESTIGATION K POTASSIUM ION A1JUE Lurbinectedin SPM SPERMINE HOH water 2853804 DNA molecule sample 1 10 Y N ideal B-DNA Other in silico model K 1 2 K K 101 A K 2 2 K K 102 A LUR 101 3 A1JUE A1JUE 101 B SPM 102 4 SPM SPM 102 B HOH 27 5 HOH HOH 201 A HOH 16 5 HOH HOH 202 A HOH 17 5 HOH HOH 203 A HOH 28 5 HOH HOH 204 A HOH 37 5 HOH HOH 205 A HOH 18 5 HOH HOH 206 A HOH 35 5 HOH HOH 207 A HOH 10 5 HOH HOH 208 A HOH 19 5 HOH HOH 209 A HOH 4 5 HOH HOH 210 A HOH 11 5 HOH HOH 211 A HOH 24 5 HOH HOH 212 A HOH 26 5 HOH HOH 213 A HOH 34 5 HOH HOH 214 A HOH 41 5 HOH HOH 201 B HOH 40 5 HOH HOH 202 B HOH 38 5 HOH HOH 203 B HOH 22 5 HOH HOH 204 B HOH 39 5 HOH HOH 205 B HOH 23 5 HOH HOH 206 B HOH 13 5 HOH HOH 207 B HOH 8 5 HOH HOH 208 B HOH 36 5 HOH HOH 209 B HOH 15 5 HOH HOH 210 B HOH 3 5 HOH HOH 211 B HOH 29 5 HOH HOH 212 B HOH 21 5 HOH HOH 213 B HOH 7 5 HOH HOH 214 B HOH 5 5 HOH HOH 215 B HOH 1 5 HOH HOH 216 B HOH 6 5 HOH HOH 217 B HOH 12 5 HOH HOH 218 B HOH 9 5 HOH HOH 219 B HOH 30 5 HOH HOH 220 B HOH 31 5 HOH HOH 221 B HOH 42 5 HOH HOH 222 B HOH 33 5 HOH HOH 223 B HOH 32 5 HOH HOH 224 B HOH 25 5 HOH HOH 225 B HOH 2 5 HOH HOH 226 B HOH 43 5 HOH HOH 227 B HOH 20 5 HOH HOH 228 B HOH 14 5 HOH HOH 229 B DC 1 n 1 DC 1 A DG 2 n 2 DG 2 A DA 3 n 3 DA 3 A DT 4 n 4 DT 4 A DG 5 n 5 DG 5 A DC 6 n 6 DC 6 A DA 7 n 7 DA 7 A DT 8 n 8 DT 8 A DC 9 n 9 DC 9 A DG 10 n 10 DG 10 A DC 1 n 1 DC 1 B DG 2 n 2 DG 2 B DA 3 n 3 DA 3 B DT 4 n 4 DT 4 B DG 5 n 5 DG 5 B DC 6 n 6 DC 6 B DA 7 n 7 DA 7 B DT 8 n 8 DT 8 B DC 9 n 9 DC 9 B DG 10 n 10 DG 10 B author_defined_assembly 2 dimeric native gel electrophoresis 2030 -5 4060 A DT 4 A O2 DT 4 1_555 A K 102 D K K 1_555 A DG 10 A O3' DG 10 1_555 45.3 A DT 4 A O2 DT 4 1_555 A K 102 D K K 1_555 B DT 8 B O2 DT 8 1_555 91.2 A DG 10 A O3' DG 10 1_555 A K 102 D K K 1_555 B DT 8 B O2 DT 8 1_555 95.7 A DT 4 A O2 DT 4 1_555 A K 102 D K K 1_555 B HOH 212 H O HOH 1_555 155.5 A DG 10 A O3' DG 10 1_555 A K 102 D K K 1_555 B HOH 212 H O HOH 1_555 145.1 B DT 8 B O2 DT 8 1_555 A K 102 D K K 1_555 B HOH 212 H O HOH 1_555 68.0 A DT 4 A O2 DT 4 1_555 A K 102 D K K 1_555 B HOH 214 H O HOH 1_555 107.4 A DG 10 A O3' DG 10 1_555 A K 102 D K K 1_555 B HOH 214 H O HOH 1_555 66.7 B DT 8 B O2 DT 8 1_555 A K 102 D K K 1_555 B HOH 214 H O HOH 1_555 71.0 B HOH 212 H O HOH 1_555 A K 102 D K K 1_555 B HOH 214 H O HOH 1_555 78.7 A DT 8 A O2 DT 8 1_555 A K 101 C K K 1_555 B DT 4 B O2 DT 4 1_555 85.4 A DT 8 A O2 DT 8 1_555 A K 101 C K K 1_555 B DG 10 B O3' DG 10 1_555 81.6 B DT 4 B O2 DT 4 1_555 A K 101 C K K 1_555 B DG 10 B O3' DG 10 1_555 33.1 A DT 8 A O2 DT 8 1_555 A K 101 C K K 1_555 B HOH 216 H O HOH 1_555 109.9 B DT 4 B O2 DT 4 1_555 A K 101 C K K 1_555 B HOH 216 H O HOH 1_555 75.6 B DG 10 B O3' DG 10 1_555 A K 101 C K K 1_555 B HOH 216 H O HOH 1_555 48.3 A DT 8 A O2 DT 8 1_555 A K 101 C K K 1_555 B HOH 226 H O HOH 1_555 162.6 B DT 4 B O2 DT 4 1_555 A K 101 C K K 1_555 B HOH 226 H O HOH 1_555 89.4 B DG 10 B O3' DG 10 1_555 A K 101 C K K 1_555 B HOH 226 H O HOH 1_555 102.8 B HOH 216 H O HOH 1_555 A K 101 C K K 1_555 B HOH 226 H O HOH 1_555 84.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B O6 O DG HOH 10 201 2.19 1 6.09 0.30 108.30 114.39 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 -2.63 0.40 120.30 117.67 A A A C6 N1 C2 DC DC DC 1 1 1 N 1 11.49 1.90 104.00 115.49 A A A O3' P O5' DC DG DG 1 2 2 Y 1 -13.67 0.90 105.70 92.03 A A A O5' P OP1 DG DG DG 2 2 2 N 1 -16.98 0.90 105.70 88.72 A A A O5' P OP2 DG DG DG 2 2 2 N 1 9.68 1.10 110.50 120.18 A A A O3' P OP1 DG DA DA 2 3 3 Y 1 -8.10 0.90 105.70 97.60 A A A O5' P OP1 DA DA DA 3 3 3 N 1 12.64 1.50 119.60 132.24 A A A OP1 P OP2 DC DC DC 6 6 6 N 1 -8.94 0.90 105.70 96.76 A A A O5' P OP2 DA DA DA 7 7 7 N 1 1.93 0.30 108.30 110.23 A A A O4' C1' N9 DA DA DA 7 7 7 N 1 -7.71 0.90 105.70 97.99 A A A O5' P OP2 DT DT DT 8 8 8 N 1 12.95 1.50 119.60 132.55 A A A OP1 P OP2 DC DC DC 9 9 9 N 1 -6.12 0.80 109.40 103.28 A A A O5' C5' C4' DC DC DC 9 9 9 N 1 -8.47 0.70 108.00 99.53 B B B O4' C1' N1 DC DC DC 1 1 1 N 1 13.32 1.10 110.50 123.82 B B B O3' P OP1 DC DG DG 1 2 2 Y 1 -9.56 0.90 105.70 96.14 B B B O5' P OP1 DG DG DG 2 2 2 N 1 2.69 0.30 108.30 110.99 B B B O4' C1' N9 DG DG DG 2 2 2 N 1 -14.37 2.20 105.20 90.83 B B B O3' P OP2 DG DA DA 2 3 3 Y 1 -21.36 2.20 105.20 83.84 B B B O3' P OP1 DG DA DA 2 3 3 Y 1 6.63 1.10 110.50 117.13 B B B O3' P OP2 DA DT DT 3 4 4 Y 1 -5.67 0.90 105.70 100.03 B B B O5' P OP1 DT DT DT 4 4 4 N 1 7.96 1.10 110.50 118.46 B B B O3' P OP2 DT DG DG 4 5 5 Y 1 10.16 1.50 119.60 129.76 B B B OP1 P OP2 DG DG DG 5 5 5 N 1 -6.47 0.90 105.70 99.23 B B B O5' P OP1 DG DG DG 5 5 5 N 1 -7.85 0.90 105.70 97.85 B B B O5' P OP2 DG DG DG 5 5 5 N 1 -4.94 0.70 108.00 103.06 B B B O4' C1' N9 DG DG DG 5 5 5 N 1 2.39 0.30 108.30 110.69 B B B O4' C1' N1 DC DC DC 6 6 6 N 1 13.37 1.10 110.50 123.87 B B B O3' P OP2 DA DT DT 7 8 8 Y 1 -13.36 2.20 105.20 91.84 B B B O3' P OP1 DT DC DC 8 9 9 Y 1 -4.28 0.70 108.00 103.72 B B B O4' C1' N9 DG DG DG 10 10 10 N 1 A A O3' C3' DG DG 5 5 -0.038 0.006 1.419 1.381 N 1 B B C2 N2 DG DG 5 5 0.064 0.010 1.341 1.405 N 55.652 0.000 0.000 0.000 0.000 0.000 0.000 0.957 0.924 Hydrogens have been added in their riding positions 0.2168 0.2009 0.202 2.3 39.7 567 10731 10731 5.019 99.9 4.741 0.099 1 FREE R-VALUE MOLECULAR REPLACEMENT 0.115 0.111 0.800 0.800 1.200 MASK BULK SOLVENT 2.3 39.7 43 518 71 404 0 0.014 0.011 530 0.002 0.017 263 3.730 1.852 810 0.645 1.568 633 42.749 14.000 5 1.463 5.000 16 0.121 0.200 87 0.026 0.020 300 0.001 0.020 77 0.273 0.200 91 0.241 0.200 313 0.275 0.200 220 0.107 0.200 180 0.192 0.200 37 0.212 0.200 5 0.541 0.200 8 0.264 0.200 31 0.232 0.200 4 8.351 5.622 530 8.373 5.633 531 9.554 9.990 810 9.548 9.998 811 10.007 72.930 836 10.608 73.228 826 0.40 0.37 2.5 5107 100.0000 2.3 39.7 9T8E 11334 0.999 1 0.142 0.032 0.146 1 16.05 21.1 99.95 3.306 2.3 2.5 1.08 5107 0.464 0.796 0.745 3.39 1 20.7 100 refinement REFMAC 5.8.0430 (refmacat 0.4.105) data reduction XDS data scaling Aimless phasing PHASER N Crystal structure of lurbinectedin bound to 10-mer duplex DNA 1 N N 1 N N 2 N N 2 N N 3 N N 4 N N 5 N N 5 N N covale 1.439 one B DG 5 B N2 DG 5 1_555 B A1JUE 101 E C27 A1JUE 1_555 metalc 2.499 A DT 4 A O2 DT 4 1_555 A K 102 D K K 1_555 metalc 2.489 A DT 8 A O2 DT 8 1_555 A K 101 C K K 1_555 metalc 2.799 A DG 10 A O3' DG 10 1_555 A K 102 D K K 16_545 metalc 2.624 A K 101 C K K 1_555 B DT 4 B O2 DT 4 1_555 metalc 3.005 A K 101 C K K 15_554 B DG 10 B O3' DG 10 1_555 metalc 2.823 A K 101 C K K 1_555 B HOH 216 H O HOH 1_555 metalc 2.838 A K 101 C K K 1_555 B HOH 226 H O HOH 1_555 metalc 2.771 A K 102 D K K 1_555 B DT 8 B O2 DT 8 1_555 metalc 2.645 A K 102 D K K 1_555 B HOH 212 H O HOH 1_555 metalc 2.925 A K 102 D K K 1_555 B HOH 214 H O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 10 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 10 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 10 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 9 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 9 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 9 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 B DT 8 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 B DT 8 B O4 DT 8 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 7 B N1 DA 7 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 7 B N6 DA 7 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 B DC 6 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 B DC 6 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 B DC 6 B N4 DC 6 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 5 B N1 DG 5 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 5 B O6 DG 5 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 5 B N2 DG 5 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 4 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 4 B O4 DT 4 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 3 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 3 B N6 DA 3 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 2 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 2 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 2 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 1 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 1 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 1 B N4 DC 1 1_555 DNA ecteinascidin, DNA duplex, covalent bond, DNA 9T8E PDB 1 1 9T8E 1 10 9T8E 1 10 9T8E A 1 1 10 1 10 9T8E 1 10 9T8E B 1 1 10 213 P 41 3 2