0.033710 0.000000 0.000000 0.000000 0.033710 0.000000 0.000000 0.000000 0.013064 0.00000 0.00000 0.00000 3.54356 2.42580 25.62398 1.50364 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0.53795 0.34799 0.11320 10.08003 29.74760 2.57510 0.0 3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.01032 2.96436 19.97189 1.75589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.49882 3.47563 15.80542 1.70748 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.31557 2.79156 1.86576 8.03600 32.36470 0.29580 0.0 3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.51135 5.44231 1.42069 35.72801 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. Ennifar, E. Micura, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 29.665 29.665 76.547 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H15 N4 O6 P 306.212 [(2~{R},3~{S},4~{R},5~{S})-5-[2,4-bis(azanyl)pyrimidin-5-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxyphosphinic acid non-polymer C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer H2 O 18.015 WATER non-polymer C10 H13 N4 O9 P 364.205 n 9-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]-2-oxidanyl-1~{H}-purin-6-one L-RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H Y 38 N C N 39 S C Y 40 N C N 41 R C N 42 S C Y 43 N C N 44 R C N 45 N C Y 46 N C Y 47 N N Y 48 N N N 49 N N N 50 N N N 51 N O N 52 N O N 53 N O N 54 N O N 55 N O N 56 N O N 57 N P N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C N 86 N N N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N C N 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 R C N 119 N O N 120 R C Y 121 N N Y 122 N C Y 123 N N Y 124 N C N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N N Y 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N C N 147 N O N 148 N C N 149 N O N 150 N C N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N O N 161 N H N 162 N H Y 163 N N Y 164 N C N 165 N N N 166 N C N 167 N O N 168 N N N 169 N C N 170 N O Y 171 N C Y 172 N N Y 173 N C N 174 R C N 175 R C N 176 S C N 177 R C N 178 N C N 179 N O N 180 N O N 181 N O N 182 N O N 183 N O N 184 N O N 185 N P N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N O N 199 N H N 200 N O N 201 N P N 202 N O N 203 N O N 204 N O N 205 N C N 206 R C N 207 N O N 208 S C N 209 N O N 210 R C N 211 N O N 212 R C N 213 N N N 214 N C N 215 N O N 216 N N N 217 N C N 218 N O N 219 N C N 220 N C N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing Y 41 N doub Y 42 N sing Y 43 N sing Y 44 N doub Y 45 N doub N 46 N doub Y 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing Y 136 N sing Y 137 N sing Y 138 N doub N 139 N sing Y 140 N sing N 141 N sing Y 142 N doub N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N doub N 173 N sing Y 174 N doub Y 175 N sing Y 176 N sing N 177 N sing N 178 N sing N 179 N sing Y 180 N sing N 181 N sing Y 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N doub N 239 N sing N 240 N sing To Be Published 0353 Ecoli Sarcin Ricin Loop (SLR) including a Kappa-Xanthosine base pair DK Acta Crystallogr., Sect. D: Biol. Crystallogr. ABCRE6 0766 0907-4449 75 861 877 10.1107/S2059798319011471 31588918 Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix 2019 0000-0003-3921-3209 0000-0002-5052-991X 0000-0003-2492-979X 0000-0002-4871-2096 0000-0001-6690-8458 0000-0001-8857-9464 0000-0003-3107-2202 0000-0001-9633-6067 0000-0001-8273-0047 0000-0002-3311-2944 0000-0002-8346-9247 0000-0002-0623-3214 0000-0001-6384-0320 0000-0001-9333-8219 10.2210/pdb9rb4/pdb pdb_00009rb4 100 1 N PIXEL 2023-09-18 DECTRIS EIGER R 4M SINGLE WAVELENGTH M x-ray 1 0.826561 1.0 X06DA SLS 0.826561 SYNCHROTRON SLS BEAMLINE X06DA 8743.270 RNA (27-MER) 1 syn polymer 92.094 GLYCEROL 3 syn non-polymer 18.015 water 152 nat water no yes UGC(A1JD2)CCUAGUACGAGAGGACCGG(HYJ)GUG UGCXCCUAGUACGAGAGGACCGGGGUG A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 1.93 36.14 VAPOR DIFFUSION, SITTING DROP 1 volume [3.1M AS, 50mM KMops pH7.0, 10mM MgCl2, 10mM MnCl2] + 2 volumes [RNA 2.5mg/ml, 1mM EDTA pH8.0, 10mM Tris pH 8.0] 293 3.073 1 28 A 2648 A 2672 -0.831 A_G2648:U2672_A 1 -10.830 -2.305 0.142 -0.596 4.933 1 19 A 2649 A 2671 -2.737 A_C2649:G2671_A 2 -13.546 0.119 0.198 -0.113 7.537 1 19 A 2651 A 2669 2.341 A_C2651:G2669_A 3 -17.970 0.305 0.278 0.069 -1.148 1 19 A 2652 A 2668 -1.683 A_C2652:G2668_A 4 -12.196 0.358 -0.004 -0.155 -4.029 A 2653 A 2667 -13.747 A_U2653:C2667_A 5 -13.827 5.923 -0.501 -2.241 6.518 4 24 A 2656 A 2665 -101.923 A_U2656:A2665_A 6 -19.611 4.159 -0.801 -1.919 -2.435 9 11 A 2657 A 2664 -1.765 A_A2657:G2664_A 7 4.141 -6.824 -0.174 -4.285 7.684 1 19 A 2658 A 2663 0.243 A_C2658:G2663_A 8 -2.171 0.139 -0.146 -0.106 17.477 A 2659 A 2662 -19.932 A_G2659:A2662_A 9 -5.880 7.240 0.691 -5.243 3.092 46.707 A A 2648 2649 4.993 A A 2672 2671 3.169 3.954 -0.234 -0.902 AA_G2648C2649:G2671U2672_AA 1 -1.516 1.915 46.525 -1.454 0.174 5.193 58.952 A A 2649 2651 11.160 A A 2671 2669 5.965 10.928 0.328 -4.089 AA_C2649C2651:G2669G2671_AA 2 1.665 -1.701 57.998 -5.121 -0.186 3.086 33.155 A A 2651 2652 10.501 A A 2669 2668 3.472 5.961 -0.651 -1.929 AA_C2651C2652:G2668G2669_AA 3 -0.287 0.506 32.628 -4.393 1.093 3.201 55.349 A A 2652 2653 9.060 A A 2668 2667 3.514 8.364 -0.661 -1.158 AA_C2652U2653:C2667G2668_AA 4 7.839 -8.492 54.240 -1.756 1.189 6.382 32.341 A A 2653 2656 -6.172 A A 2667 2665 6.263 -3.411 0.741 -1.211 AA_U2653U2656:A2665C2667_AA 5 6.198 -11.213 31.578 -0.994 0.815 4.287 -11.126 A A 2656 2657 5.130 A A 2665 2664 3.590 -0.988 5.073 -1.197 AA_U2656A2657:G2664A2665_AA 6 -1.915 -9.940 -10.916 7.991 22.649 3.099 58.986 A A 2657 2658 3.572 A A 2664 2663 3.164 3.514 -0.086 -1.121 AA_A2657C2658:G2663G2664_AA 7 -3.219 3.273 58.810 -1.311 -0.071 3.208 51.461 A A 2658 2659 6.981 A A 2663 2662 3.045 6.032 -2.651 -1.295 AA_C2658G2659:A2662G2663_AA 8 -7.246 8.387 50.647 -1.888 2.576 repository Initial release 1 0 2026-06-03 France Centre National de la Recherche Scientifique (CNRS) Austria Austrian Research Promotion Agency Austria Austrian Science Fund 10.55776/F80 e.ennifar@unistra.fr 0000-0002-5076-846X Eric Ennifar principal investigator/group leader Ronald.Micura@uibk.ac.at 0000-0003-2661-6105 Ronald Micura principal investigator/group leader N PDBE N PDBE 2025-05-21 REL REL 1 A O HOH 2952 6.17 A1JD2 A1JD2 SUBJECT OF INVESTIGATION HYJ HYJ SUBJECT OF INVESTIGATION GOL GLYCEROL HOH water 32630 synthetic construct sample 1 27 Y N 3DVZ PDB experimental model GOL 1 2 GOL GOL 2701 A GOL 2 2 GOL GOL 2702 A GOL 3 2 GOL GOL 2703 A HOH 8 3 HOH HOH 2801 A HOH 37 3 HOH HOH 2802 A HOH 67 3 HOH HOH 2803 A HOH 77 3 HOH HOH 2804 A HOH 119 3 HOH HOH 2805 A HOH 38 3 HOH HOH 2806 A HOH 60 3 HOH HOH 2807 A HOH 94 3 HOH HOH 2808 A HOH 55 3 HOH HOH 2809 A HOH 91 3 HOH HOH 2810 A HOH 85 3 HOH HOH 2811 A HOH 101 3 HOH HOH 2812 A HOH 84 3 HOH HOH 2813 A HOH 32 3 HOH HOH 2814 A HOH 134 3 HOH HOH 2815 A HOH 86 3 HOH HOH 2816 A HOH 13 3 HOH HOH 2817 A HOH 48 3 HOH HOH 2818 A HOH 47 3 HOH HOH 2819 A HOH 148 3 HOH HOH 2820 A HOH 42 3 HOH HOH 2821 A HOH 65 3 HOH HOH 2822 A HOH 80 3 HOH HOH 2823 A HOH 110 3 HOH HOH 2824 A HOH 68 3 HOH HOH 2825 A HOH 39 3 HOH HOH 2826 A HOH 161 3 HOH HOH 2827 A HOH 11 3 HOH HOH 2828 A HOH 12 3 HOH HOH 2829 A HOH 28 3 HOH HOH 2830 A HOH 120 3 HOH HOH 2831 A HOH 72 3 HOH HOH 2832 A HOH 5 3 HOH HOH 2833 A HOH 96 3 HOH HOH 2834 A HOH 95 3 HOH HOH 2835 A HOH 23 3 HOH HOH 2836 A HOH 15 3 HOH HOH 2837 A HOH 93 3 HOH HOH 2838 A HOH 7 3 HOH HOH 2839 A HOH 125 3 HOH HOH 2840 A HOH 27 3 HOH HOH 2841 A HOH 138 3 HOH HOH 2842 A HOH 18 3 HOH HOH 2843 A HOH 31 3 HOH HOH 2844 A HOH 45 3 HOH HOH 2845 A HOH 50 3 HOH HOH 2846 A HOH 57 3 HOH HOH 2847 A HOH 75 3 HOH HOH 2848 A HOH 92 3 HOH HOH 2849 A HOH 146 3 HOH HOH 2850 A HOH 41 3 HOH HOH 2851 A HOH 104 3 HOH HOH 2852 A HOH 107 3 HOH HOH 2853 A HOH 114 3 HOH HOH 2854 A HOH 29 3 HOH HOH 2855 A HOH 26 3 HOH HOH 2856 A HOH 17 3 HOH HOH 2857 A HOH 61 3 HOH HOH 2858 A HOH 123 3 HOH HOH 2859 A HOH 63 3 HOH HOH 2860 A HOH 46 3 HOH HOH 2861 A HOH 97 3 HOH HOH 2862 A HOH 1 3 HOH HOH 2863 A HOH 115 3 HOH HOH 2864 A HOH 3 3 HOH HOH 2865 A HOH 144 3 HOH HOH 2866 A HOH 9 3 HOH HOH 2867 A HOH 89 3 HOH HOH 2868 A HOH 111 3 HOH HOH 2869 A HOH 36 3 HOH HOH 2870 A HOH 87 3 HOH HOH 2871 A HOH 2 3 HOH HOH 2872 A HOH 44 3 HOH HOH 2873 A HOH 22 3 HOH HOH 2874 A HOH 113 3 HOH HOH 2875 A HOH 103 3 HOH HOH 2876 A HOH 106 3 HOH HOH 2877 A HOH 71 3 HOH HOH 2878 A HOH 51 3 HOH HOH 2879 A HOH 157 3 HOH HOH 2880 A HOH 10 3 HOH HOH 2881 A HOH 49 3 HOH HOH 2882 A HOH 147 3 HOH HOH 2883 A HOH 6 3 HOH HOH 2884 A HOH 19 3 HOH HOH 2885 A HOH 20 3 HOH HOH 2886 A HOH 109 3 HOH HOH 2887 A HOH 74 3 HOH HOH 2888 A HOH 52 3 HOH HOH 2889 A HOH 56 3 HOH HOH 2890 A HOH 64 3 HOH HOH 2891 A HOH 35 3 HOH HOH 2892 A HOH 54 3 HOH HOH 2893 A HOH 34 3 HOH HOH 2894 A HOH 79 3 HOH HOH 2895 A HOH 99 3 HOH HOH 2896 A HOH 78 3 HOH HOH 2897 A HOH 33 3 HOH HOH 2898 A HOH 24 3 HOH HOH 2899 A HOH 21 3 HOH HOH 2900 A HOH 40 3 HOH HOH 2901 A HOH 116 3 HOH HOH 2902 A HOH 98 3 HOH HOH 2903 A HOH 4 3 HOH HOH 2904 A HOH 69 3 HOH HOH 2905 A HOH 62 3 HOH HOH 2906 A HOH 76 3 HOH HOH 2907 A HOH 143 3 HOH HOH 2908 A HOH 117 3 HOH HOH 2909 A HOH 105 3 HOH HOH 2910 A HOH 14 3 HOH HOH 2911 A HOH 70 3 HOH HOH 2912 A HOH 81 3 HOH HOH 2913 A HOH 126 3 HOH HOH 2914 A HOH 130 3 HOH HOH 2915 A HOH 141 3 HOH HOH 2916 A HOH 59 3 HOH HOH 2917 A HOH 122 3 HOH HOH 2918 A HOH 43 3 HOH HOH 2919 A HOH 25 3 HOH HOH 2920 A HOH 16 3 HOH HOH 2921 A HOH 30 3 HOH HOH 2922 A HOH 90 3 HOH HOH 2923 A HOH 100 3 HOH HOH 2924 A HOH 131 3 HOH HOH 2925 A HOH 128 3 HOH HOH 2926 A HOH 158 3 HOH HOH 2927 A HOH 88 3 HOH HOH 2928 A HOH 132 3 HOH HOH 2929 A HOH 66 3 HOH HOH 2930 A HOH 153 3 HOH HOH 2931 A HOH 58 3 HOH HOH 2932 A HOH 142 3 HOH HOH 2933 A HOH 129 3 HOH HOH 2934 A HOH 149 3 HOH HOH 2935 A HOH 118 3 HOH HOH 2936 A HOH 73 3 HOH HOH 2937 A HOH 150 3 HOH HOH 2938 A HOH 112 3 HOH HOH 2939 A HOH 162 3 HOH HOH 2940 A HOH 159 3 HOH HOH 2941 A HOH 121 3 HOH HOH 2942 A HOH 82 3 HOH HOH 2943 A HOH 83 3 HOH HOH 2944 A HOH 133 3 HOH HOH 2945 A HOH 140 3 HOH HOH 2946 A HOH 160 3 HOH HOH 2947 A HOH 102 3 HOH HOH 2948 A HOH 135 3 HOH HOH 2949 A HOH 108 3 HOH HOH 2950 A HOH 163 3 HOH HOH 2951 A HOH 139 3 HOH HOH 2952 A U 2647 n 1 U 2647 A G 2648 n 2 G 2648 A C 2649 n 3 C 2649 A KAP 2650 n 4 A1JD2 2650 A C 2651 n 5 C 2651 A C 2652 n 6 C 2652 A U 2653 n 7 U 2653 A A 2654 n 8 A 2654 A G 2655 n 9 G 2655 A U 2656 n 10 U 2656 A A 2657 n 11 A 2657 A C 2658 n 12 C 2658 A G 2659 n 13 G 2659 A A 2660 n 14 A 2660 A G 2661 n 15 G 2661 A A 2662 n 16 A 2662 A G 2663 n 17 G 2663 A G 2664 n 18 G 2664 A A 2665 n 19 A 2665 A C 2666 n 20 C 2666 A C 2667 n 21 C 2667 A G 2668 n 22 G 2668 A G 2669 n 23 G 2669 A XAN 2670 n 24 HYJ 2670 A G 2671 n 25 G 2671 A U 2672 n 26 U 2672 A G 2673 n 27 G 2673 A author_and_software_defined_assembly PISA 1 monomeric 570 -3 4900 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 7.56 1.20 110.70 118.26 A A A O5' P OP1 G G G 2655 2655 2655 A A A N 1 -7.62 0.90 105.70 98.08 A A A O5' P OP2 G G G 2655 2655 2655 A A A N 1 -13.48 2.20 105.20 91.72 A A A O3' P OP1 G HYJ HYJ 2669 2670 2670 B B B Y 0.1339 0.1165 0.1174 1.00 27.66 1776 35587 4.99 99.93 0.08 1 FREE R-VALUE 1.38 MOLECULAR REPLACEMENT 12.34 0.90 1.10 ML FLAT BULK SOLVENT MODEL 1.00 27.66 152 750 18 580 0 0.008 836 1.604 1302 22.870 511 0.055 165 0.033 37 0.2312 0.1950 1.03 136 2565 99.00 0.2011 0.1557 1.06 136 2593 100.00 0.1621 0.1321 1.09 138 2613 100.00 0.1585 0.1281 1.13 135 2577 100.00 0.1202 0.1182 1.18 138 2606 100.00 0.1302 0.1113 1.23 137 2608 100.00 0.1395 0.1104 1.29 136 2579 100.00 0.1159 0.1124 1.38 136 2591 100.00 0.1300 0.1187 1.48 138 2616 100.00 0.1146 0.1088 1.63 137 2599 100.00 0.0950 0.1018 1.87 138 2612 100.00 0.1344 0.1251 2.35 137 2615 100.00 0.1463 0.1115 27.66 134 2637 100.00 8.82 0.938 27.66 9RB4 520196 0.999 1 16.5 12.9 93.4 0.938 0.974 13500 0.584 1 refinement PHENIX (1.21.2_5419: ???) data reduction autoPROC data scaling STARANISO phasing PHENIX 78 tetragonal P 43 P 4cw x,y,z -y,x,z+3/4 y,-x,z+1/4 -x,-y,z+1/2 N Ecoli Sarcin Ricin Loop (SLR) including a Kappa-Xanthosine base pair 1 N N 2 N N 2 N N 2 N N 3 N N covale 1.601 one A C 2649 A O3' C 3 1_555 A A1JD2 2650 A P A1JD2 4 1_555 covale 1.600 one A A1JD2 2650 A O3' A1JD2 4 1_555 A C 2651 A P C 5 1_555 covale 1.616 both A A A G 2669 A O3' G 23 1_555 A HYJ 2670 A P HYJ 24 1_555 covale 1.599 both B B A G 2669 A O3' G 23 1_555 A HYJ 2670 A P HYJ 24 1_555 covale 1.605 one A A HYJ 2670 A O3' HYJ 24 1_555 A G 2671 A P G 25 1_555 covale 1.606 one B A HYJ 2670 A O3' HYJ 24 1_555 A G 2671 A P G 25 1_555 hydrog TYPE_28_PAIR A A G 2648 A N1 G 2 1_555 A U 2672 A O2 U 26 1_555 hydrog TYPE_28_PAIR B A G 2648 A N1 G 2 1_555 A U 2672 A O2 U 26 1_555 hydrog TYPE_28_PAIR A A G 2648 A O6 G 2 1_555 A U 2672 A N3 U 26 1_555 hydrog TYPE_28_PAIR B A G 2648 A O6 G 2 1_555 A U 2672 A N3 U 26 1_555 hydrog WATSON-CRICK A C 2649 A N3 C 3 1_555 A G 2671 A N1 G 25 1_555 hydrog WATSON-CRICK A C 2649 A N4 C 3 1_555 A G 2671 A O6 G 25 1_555 hydrog WATSON-CRICK A C 2649 A O2 C 3 1_555 A G 2671 A N2 G 25 1_555 hydrog WATSON-CRICK A A C 2651 A N3 C 5 1_555 A G 2669 A N1 G 23 1_555 hydrog WATSON-CRICK B A C 2651 A N3 C 5 1_555 A G 2669 A N1 G 23 1_555 hydrog WATSON-CRICK A A C 2651 A N4 C 5 1_555 A G 2669 A O6 G 23 1_555 hydrog WATSON-CRICK B A C 2651 A N4 C 5 1_555 A G 2669 A O6 G 23 1_555 hydrog WATSON-CRICK A A C 2651 A O2 C 5 1_555 A G 2669 A N2 G 23 1_555 hydrog WATSON-CRICK B A C 2651 A O2 C 5 1_555 A G 2669 A N2 G 23 1_555 hydrog WATSON-CRICK A C 2652 A N3 C 6 1_555 A G 2668 A N1 G 22 1_555 hydrog WATSON-CRICK A C 2652 A N4 C 6 1_555 A G 2668 A O6 G 22 1_555 hydrog WATSON-CRICK A C 2652 A O2 C 6 1_555 A G 2668 A N2 G 22 1_555 hydrog U-C MISPAIR A A U 2653 A O2 U 7 1_555 A C 2667 A N4 C 21 1_555 hydrog U-C MISPAIR B A U 2653 A O2 U 7 1_555 A C 2667 A N4 C 21 1_555 hydrog REVERSED HOOGSTEEN A U 2656 A N3 U 10 1_555 A A 2665 A N7 A 19 1_555 hydrog REVERSED HOOGSTEEN A U 2656 A O2 U 10 1_555 A A 2665 A N6 A 19 1_555 hydrog TYPE_11_PAIR A A 2657 A N6 A 11 1_555 A G 2664 A N3 G 18 1_555 hydrog TYPE_11_PAIR A A 2657 A N7 A 11 1_555 A G 2664 A N2 G 18 1_555 hydrog WATSON-CRICK A C 2658 A N3 C 12 1_555 A G 2663 A N1 G 17 1_555 hydrog WATSON-CRICK A C 2658 A N4 C 12 1_555 A G 2663 A O6 G 17 1_555 hydrog WATSON-CRICK A C 2658 A O2 C 12 1_555 A G 2663 A N2 G 17 1_555 hydrog G-A MISPAIR A G 2659 A N2 G 13 1_555 A A 2662 A N7 A 16 1_555 RNA RNA, modification 9RB4 PDB 1 1 9RB4 2647 2673 9RB4 2647 2673 9RB4 A 1 1 27 78 P 43