0.009597 0.000000 0.000000 0.000000 0.009597 0.000000 0.000000 0.000000 0.004789 0.00000 0.00000 0.00000 Ding, F. Lu, C. Zhano, W. Rajashankar, K.R. Anderson, D.L. Jardine, P.J. Grimes, S. Ke, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 104.197 104.197 208.793 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N H N 113 N H N 114 N MG N 115 N O N 116 N P N 117 N O N 118 N O N 119 N O N 120 N C N 121 R C N 122 N O N 123 S C N 124 N O N 125 R C N 126 N O N 127 R C N 128 N N N 129 N C N 130 N O N 131 N N N 132 N C N 133 N O N 134 N C N 135 N C N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N doub N 151 N sing N 152 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 108 7357 7362 10.1073/pnas.1016690108 21471452 Structure and assembly of the essential RNA ring component of a viral DNA packaging motor. 2011 10.2210/pdb3r4f/pdb pdb_00003r4f 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 1 1 CCD ADSC QUANTUM 270 CCD ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 SINGLE WAVELENGTH M x-ray 1 1.25465 1.0 0.97949 1.0 24-ID-C APS 1.25465 1.25465 SYNCHROTRON APS BEAMLINE 24-ID-C F1 CHESS 0.97949 0.97949 SYNCHROTRON CHESS BEAMLINE F1 21189.488 pRNA 1 syn polymer 24.305 MAGNESIUM ION 9 syn non-polymer 18.015 water 3 nat water no no GGCGUGUAUGUGGGGAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUGGUUGUCAAUCGCC GGCGUGUAUGUGGGGAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUGGUUGUCAAUCGCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 2 6.69 81.60 VAPOR DIFFUSION 6.0 100 mM MES, 10 mM magnesium diacetate, 2.5 M ammonium sulfate, pH 6.0, VAPOR DIFFUSION, temperature 298K 298 -6.327 1 19 A 1 A 66 -8.383 A_G1:C66_A 1 14.677 -0.295 -0.523 -0.162 -2.257 1 19 A 2 A 65 -1.859 A_G2:C65_A 2 2.597 0.017 -0.371 -0.124 -6.667 1 19 A 3 A 64 0.451 A_C3:G64_A 3 -12.487 0.121 0.201 -0.138 -15.253 1 19 A 4 A 63 -2.526 A_G4:C63_A 4 -4.262 0.179 -0.354 0.060 -8.808 1 A 47 A 62 -4.849 A_G47:U62_A 5 -4.867 -1.140 -0.509 0.051 -8.760 1 20 A 48 A 61 3.791 A_U48:A61_A 6 -16.136 0.169 -0.284 -0.033 -11.486 1 20 A 49 A 60 -9.647 A_U49:A60_A 7 -13.865 -0.397 -0.097 0.107 -5.123 1 19 A 50 A 59 -0.840 A_G50:C59_A 8 8.126 0.269 0.070 -0.052 13.122 1 20 A 51 A 58 0.381 A_A51:U58_A 9 -7.262 0.527 -0.197 -0.154 4.934 A 52 A 57 -26.771 A_U52:G57_A 10 -15.054 2.434 -0.162 -0.399 22.719 1 16 A 5 A 44 13.763 A_U5:U44_A 11 -20.000 -2.208 -1.537 -2.165 -16.805 1 19 A 6 A 43 0.942 A_G6:C43_A 12 -14.285 -0.379 -0.967 -0.103 4.530 1 20 A 7 A 42 -0.456 A_U7:A42_A 13 -10.123 -0.250 -1.048 0.001 -10.686 1 20 A 8 A 41 10.313 A_A8:U41_A 14 -7.794 -0.063 -0.043 -0.172 4.431 1 20 A 9 A 40 0.811 A_U9:A40_A 15 6.186 0.140 0.408 -0.284 15.351 1 19 A 10 A 39 -6.032 A_G10:C39_A 16 8.477 -0.854 0.218 -0.267 8.665 1 20 A 11 A 38 6.744 A_U11:A38_A 17 -5.459 0.022 -0.485 0.104 -11.038 1 19 A 12 A 37 6.012 A_G12:C37_A 18 -8.098 -0.172 -0.786 0.131 -15.943 1 19 A 13 A 36 -9.110 A_G13:C36_A 19 -1.153 0.282 -0.752 -0.012 -10.976 1 19 A 14 A 35 -1.060 A_G14:C35_A 20 3.375 0.319 -1.558 -0.391 -3.151 1 19 A 21 A 34 -7.958 A_C21:G34_A 21 -13.242 0.003 0.222 -0.042 4.810 1 20 A 22 A 33 -1.706 A_U22:A33_A 22 -23.986 -0.169 -0.161 0.077 -15.059 1 19 A 23 A 32 -4.812 A_G23:C32_A 23 -18.078 -0.165 -0.411 -0.050 2.637 1 20 A 24 A 31 7.063 A_A24:U31_A 24 -3.789 0.097 0.470 -0.054 15.584 1 16 A 25 A 30 8.018 A_U25:U30_A 25 -15.916 1.984 0.479 -2.135 2.524 36.928 A A 1 2 13.965 A A 66 65 3.090 8.761 0.406 -1.971 AA_G1G2:C65C66_AA 1 -2.310 3.682 35.837 -4.144 -0.913 3.299 33.845 A A 2 3 0.183 A A 65 64 3.315 0.106 0.249 -1.725 AA_G2C3:G64C65_AA 2 -1.257 2.160 33.822 -2.981 -0.632 1.729 32.824 A A 3 4 32.121 A A 64 63 3.343 17.251 0.252 -2.218 AA_C3G4:C63G64_AA 3 3.179 -5.920 27.853 -6.423 0.014 1.711 17.583 A A 4 47 28.552 A A 63 62 3.146 8.374 1.852 -2.436 AA_G4G47:U62C63_AA 4 0.934 -3.186 15.447 -11.970 -5.611 3.562 34.655 A A 47 48 -4.899 A A 62 61 3.423 -2.911 -0.050 -1.955 AA_G47U48:A61U62_AA 5 -3.233 5.441 34.389 -2.803 -0.449 3.105 36.570 A A 48 49 8.147 A A 61 60 3.328 5.094 -0.279 -1.508 AA_U48U49:A60A61_AA 6 -2.114 3.382 36.166 -3.098 0.157 3.242 31.911 A A 49 50 -5.139 A A 60 59 3.057 -2.821 0.334 -2.134 AA_U49G50:C59A60_AA 7 1.558 -2.839 31.752 -3.387 -0.335 2.944 34.434 A A 50 51 0.087 A A 59 58 2.956 0.050 0.425 -0.964 AA_G50A51:U58C59_AA 8 10.764 -18.474 32.757 -1.636 0.834 3.259 35.466 A A 51 52 9.020 A A 58 57 3.663 5.458 -0.664 -1.640 AA_A51U52:G57U58_AA 9 4.774 -7.889 34.741 -3.548 1.839 4.413 34.053 A A 5 6 18.885 A A 44 43 5.043 10.851 -0.101 -1.152 AA_U5G6:C43U44_AA 10 -4.045 7.039 32.079 -4.545 -0.788 2.610 29.837 A A 6 7 10.156 A A 43 42 2.913 5.203 -0.543 -1.579 AA_G6U7:A42C43_AA 11 -0.537 1.047 29.385 -3.988 0.960 3.612 27.865 A A 7 8 9.428 A A 42 41 3.957 4.509 0.542 -1.246 AA_U7A8:U41A42_AA 12 -3.507 7.333 27.284 -3.847 -2.107 2.792 41.072 A A 8 9 5.636 A A 41 40 2.945 3.946 0.066 -1.427 AA_A8U9:A40U41_AA 13 -2.529 3.612 40.815 -2.411 -0.336 2.041 25.898 A A 9 10 23.283 A A 40 39 2.704 10.127 0.310 -1.215 AA_U9G10:C39A40_AA 14 3.727 -8.568 23.578 -4.845 0.094 2.437 40.372 A A 10 11 20.759 A A 39 38 3.241 14.037 0.548 -1.935 AA_G10U11:A38C39_AA 15 3.118 -4.611 37.825 -4.225 -0.478 2.193 36.032 A A 11 12 37.500 A A 38 37 3.622 21.700 0.058 -1.243 AA_U11G12:C37A38_AA 16 1.145 -1.978 28.916 -5.074 0.068 3.643 34.463 A A 12 13 1.568 A A 37 36 3.594 0.926 -0.928 -1.805 AA_G12G13:C36C37_AA 17 -5.203 8.815 34.067 -3.207 0.667 3.613 34.373 A A 13 14 -4.054 A A 36 35 3.533 -2.382 0.272 -1.369 AA_G13G14:C35C36_AA 18 5.971 -10.159 33.784 -1.906 0.568 2.784 27.899 A A 21 22 10.387 A A 34 33 3.193 4.976 0.528 -1.748 AA_C21U22:A33G34_AA 19 -2.345 4.895 27.362 -4.720 -1.611 2.570 41.510 A A 22 23 30.691 A A 33 32 3.523 20.832 -0.232 -1.066 AA_U22G23:C32A33_AA 20 -2.096 3.088 36.045 -3.731 0.104 2.868 29.066 A A 23 24 -12.567 A A 32 31 2.840 -6.074 0.235 -2.129 AA_G23A24:U31C32_AA 21 -12.063 24.958 25.798 -3.006 -2.924 3.046 45.999 A A 24 25 -6.275 A A 31 30 2.994 -4.894 0.392 -0.832 AA_A24U25:U30U31_AA 22 -1.799 2.307 45.719 -0.674 -0.646 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2011-04-20 1 1 2011-07-13 1 2 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2011-03-17 REL REL MG MAGNESIUM ION HOH water RNA WAS PREPARED BY IN VITRO TRANSCRIPTION WITH T7 RNA POLYMERASE sample MG 200 2 MG MG 200 A MG 201 2 MG MG 201 A MG 202 2 MG MG 202 A MG 203 2 MG MG 203 A MG 204 2 MG MG 204 A MG 205 2 MG MG 205 A MG 206 2 MG MG 206 A MG 207 2 MG MG 207 A MG 208 2 MG MG 208 A TIP 1 3 HOH HOH 67 A TIP 2 3 HOH HOH 68 A TIP 3 3 HOH HOH 69 A GUA 1 n 1 G 1 A GUA 2 n 2 G 2 A CYT 3 n 3 C 3 A GUA 4 n 4 G 4 A URI 5 n 5 U 5 A GUA 6 n 6 G 6 A URI 7 n 7 U 7 A ADE 8 n 8 A 8 A URI 9 n 9 U 9 A GUA 10 n 10 G 10 A URI 11 n 11 U 11 A GUA 12 n 12 G 12 A GUA 13 n 13 G 13 A GUA 14 n 14 G 14 A GUA 15 n 15 G 15 A ADE 16 n 16 A 16 A ADE 17 n 17 A 17 A ADE 18 n 18 A 18 A CYT 19 n 19 C 19 A CYT 20 n 20 C 20 A CYT 21 n 21 C 21 A URI 22 n 22 U 22 A GUA 23 n 23 G 23 A ADE 24 n 24 A 24 A URI 25 n 25 U 25 A URI 26 n 26 U 26 A GUA 27 n 27 G 27 A ADE 28 n 28 A 28 A GUA 29 n 29 G 29 A URI 30 n 30 U 30 A URI 31 n 31 U 31 A CYT 32 n 32 C 32 A ADE 33 n 33 A 33 A GUA 34 n 34 G 34 A CYT 35 n 35 C 35 A CYT 36 n 36 C 36 A CYT 37 n 37 C 37 A ADE 38 n 38 A 38 A CYT 39 n 39 C 39 A ADE 40 n 40 A 40 A URI 41 n 41 U 41 A ADE 42 n 42 A 42 A CYT 43 n 43 C 43 A URI 44 n 44 U 44 A URI 45 n 45 U 45 A URI 46 n 46 U 46 A GUA 47 n 47 G 47 A URI 48 n 48 U 48 A URI 49 n 49 U 49 A GUA 50 n 50 G 50 A ADE 51 n 51 A 51 A URI 52 n 52 U 52 A GUA 53 n 53 G 53 A GUA 54 n 54 G 54 A URI 55 n 55 U 55 A URI 56 n 56 U 56 A GUA 57 n 57 G 57 A URI 58 n 58 U 58 A CYT 59 n 59 C 59 A ADE 60 n 60 A 60 A ADE 61 n 61 A 61 A URI 62 n 62 U 62 A CYT 63 n 63 C 63 A GUA 64 n 64 G 64 A CYT 65 n 65 C 65 A CYT 66 n 66 C 66 A software_defined_assembly PISA 2 dimeric 1530 -85 24150 A A 8 A O3' A 8 1_555 A MG 206 H MG MG 1_555 A U 9 A OP1 U 9 1_555 55.5 A U 26 A O4 U 26 1_555 A MG 202 D MG MG 1_555 A G 29 A OP2 G 29 1_555 71.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 15_545 y+1/2,x-1/2,-z+1/2 crystal symmetry operation 52.0985000000 -52.0985000000 104.3965000000 1 A A O O HOH HOH 67 68 2.04 1 A G 14 0.057 SIDE CHAIN 1 A U 52 0.090 SIDE CHAIN 1 A C 59 0.079 SIDE CHAIN 1 A A O O HOH HOH 67 67 1.95 1_555 3_555 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:dna-rna_rep.param CNS_TOPPAR:ion.param CNS_TOPPAR:water.param 261.370 198.7476 93.900 9.3330 0.0000 0.0000 9.3330 0.0000 -18.6660 0.2709 0.2392 3.5000 20.0000 644 5964 6608 8.5000 87.3000 1.000 1.000 1 0.000 SAD Engh & Huber 9.3825 3.5000 20.0000 3 1412 9 1400 0 0.009 1.353 3.5 50 3R4F 6608 6608 2.5 1 1,2 100 data collection HKL-3000 phasing SHELXS refinement REFMAC 5.0 data reduction HKL-3000 data scaling HKL-3000 Prohead RNA 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N metalc 2.250 A G 1 A O5' G 1 1_555 A MG 205 G MG MG 1_555 metalc 2.558 A A 8 A O3' A 8 1_555 A MG 206 H MG MG 1_555 metalc 2.761 A U 9 A OP1 U 9 1_555 A MG 206 H MG MG 1_555 metalc 2.926 A U 26 A O4 U 26 1_555 A MG 202 D MG MG 1_555 metalc 2.355 A G 29 A OP2 G 29 1_555 A MG 202 D MG MG 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 66 A N3 C 66 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 66 A O2 C 66 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 66 A N4 C 66 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 65 A N3 C 65 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 65 A O2 C 65 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 65 A N4 C 65 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 64 A N1 G 64 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 64 A O6 G 64 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 64 A N2 G 64 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 63 A N3 C 63 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 63 A O2 C 63 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 63 A N4 C 63 1_555 hydrog TYPE_16_PAIR A U 5 A N3 U 5 1_555 A U 44 A O2 U 44 1_555 hydrog TYPE_16_PAIR A U 5 A O4 U 5 1_555 A U 44 A N3 U 44 1_555 hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 A C 43 A N3 C 43 1_555 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 A C 43 A O2 C 43 1_555 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 A C 43 A N4 C 43 1_555 hydrog WATSON-CRICK A U 7 A N3 U 7 1_555 A A 42 A N1 A 42 1_555 hydrog WATSON-CRICK A U 7 A O4 U 7 1_555 A A 42 A N6 A 42 1_555 hydrog WATSON-CRICK A A 8 A N1 A 8 1_555 A U 41 A N3 U 41 1_555 hydrog WATSON-CRICK A A 8 A N6 A 8 1_555 A U 41 A O4 U 41 1_555 hydrog WATSON-CRICK A U 9 A N3 U 9 1_555 A A 40 A N1 A 40 1_555 hydrog WATSON-CRICK A U 9 A O4 U 9 1_555 A A 40 A N6 A 40 1_555 hydrog WATSON-CRICK A G 10 A N1 G 10 1_555 A C 39 A N3 C 39 1_555 hydrog WATSON-CRICK A G 10 A N2 G 10 1_555 A C 39 A O2 C 39 1_555 hydrog WATSON-CRICK A G 10 A O6 G 10 1_555 A C 39 A N4 C 39 1_555 hydrog WATSON-CRICK A U 11 A N3 U 11 1_555 A A 38 A N1 A 38 1_555 hydrog WATSON-CRICK A U 11 A O4 U 11 1_555 A A 38 A N6 A 38 1_555 hydrog WATSON-CRICK A G 12 A N1 G 12 1_555 A C 37 A N3 C 37 1_555 hydrog WATSON-CRICK A G 12 A N2 G 12 1_555 A C 37 A O2 C 37 1_555 hydrog WATSON-CRICK A G 12 A O6 G 12 1_555 A C 37 A N4 C 37 1_555 hydrog WATSON-CRICK A G 13 A N1 G 13 1_555 A C 36 A N3 C 36 1_555 hydrog WATSON-CRICK A G 13 A N2 G 13 1_555 A C 36 A O2 C 36 1_555 hydrog WATSON-CRICK A G 13 A O6 G 13 1_555 A C 36 A N4 C 36 1_555 hydrog WATSON-CRICK A G 14 A N1 G 14 1_555 A C 35 A N3 C 35 1_555 hydrog WATSON-CRICK A G 14 A N2 G 14 1_555 A C 35 A O2 C 35 1_555 hydrog WATSON-CRICK A G 14 A O6 G 14 1_555 A C 35 A N4 C 35 1_555 hydrog WATSON-CRICK A G 14 A N1 G 14 1_555 A C 36 A N3 C 36 1_555 hydrog WATSON-CRICK A G 14 A N2 G 14 1_555 A C 36 A O2 C 36 1_555 hydrog WATSON-CRICK A G 14 A O6 G 14 1_555 A C 36 A N4 C 36 1_555 hydrog G-C PAIR A G 15 A N1 G 15 1_555 A C 35 A N3 C 35 1_555 hydrog WATSON-CRICK A C 21 A N3 C 21 1_555 A G 34 A N1 G 34 1_555 hydrog WATSON-CRICK A C 21 A N4 C 21 1_555 A G 34 A O6 G 34 1_555 hydrog WATSON-CRICK A C 21 A O2 C 21 1_555 A G 34 A N2 G 34 1_555 hydrog WATSON-CRICK A U 22 A N3 U 22 1_555 A A 33 A N1 A 33 1_555 hydrog WATSON-CRICK A U 22 A O4 U 22 1_555 A A 33 A N6 A 33 1_555 hydrog WATSON-CRICK A G 23 A N1 G 23 1_555 A C 32 A N3 C 32 1_555 hydrog WATSON-CRICK A G 23 A N2 G 23 1_555 A C 32 A O2 C 32 1_555 hydrog WATSON-CRICK A G 23 A O6 G 23 1_555 A C 32 A N4 C 32 1_555 hydrog A-U PAIR A A 24 A N6 A 24 1_555 A U 30 A O4 U 30 1_555 hydrog WATSON-CRICK A A 24 A N1 A 24 1_555 A U 31 A N3 U 31 1_555 hydrog WATSON-CRICK A A 24 A N6 A 24 1_555 A U 31 A O4 U 31 1_555 hydrog TYPE_16_PAIR A U 25 A N3 U 25 1_555 A U 30 A O4 U 30 1_555 hydrog TYPE_16_PAIR A U 25 A O2 U 25 1_555 A U 30 A N3 U 30 1_555 hydrog G-U MISPAIR A G 47 A N2 G 47 1_555 A U 62 A O2 U 62 1_555 hydrog WATSON-CRICK A U 48 A N3 U 48 1_555 A A 61 A N1 A 61 1_555 hydrog WATSON-CRICK A U 48 A O4 U 48 1_555 A A 61 A N6 A 61 1_555 hydrog WATSON-CRICK A U 49 A N3 U 49 1_555 A A 60 A N1 A 60 1_555 hydrog WATSON-CRICK A U 49 A O4 U 49 1_555 A A 60 A N6 A 60 1_555 hydrog WATSON-CRICK A G 50 A N1 G 50 1_555 A C 59 A N3 C 59 1_555 hydrog WATSON-CRICK A G 50 A N2 G 50 1_555 A C 59 A O2 C 59 1_555 hydrog WATSON-CRICK A G 50 A O6 G 50 1_555 A C 59 A N4 C 59 1_555 hydrog WATSON-CRICK A A 51 A N1 A 51 1_555 A U 58 A N3 U 58 1_555 hydrog WATSON-CRICK A A 51 A N6 A 51 1_555 A U 58 A O4 U 58 1_555 hydrog U-G MISPAIR A U 52 A N3 U 52 1_555 A G 57 A O6 G 57 1_555 RNA prohead RNA, motor, viral packaging, RNA 3R4F PDB 1 3R4F GGCGUGUAUGUGGGGAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUGGUUGUCAAUCGCC 1 66 3R4F 1 66 3R4F A 1 1 66 BINDING SITE FOR RESIDUE MG A 200 A MG 200 Software 2 BINDING SITE FOR RESIDUE MG A 201 A MG 201 Software 2 BINDING SITE FOR RESIDUE MG A 202 A MG 202 Software 3 BINDING SITE FOR RESIDUE MG A 205 A MG 205 Software 2 BINDING SITE FOR RESIDUE MG A 206 A MG 206 Software 2 BINDING SITE FOR RESIDUE MG A 207 A MG 207 Software 1 BINDING SITE FOR RESIDUE MG A 208 A MG 208 Software 2 A G 1 A G 1 2 1_555 A MG 205 G MG 2 1_555 A G 29 A G 29 2 1_555 A C 32 A C 32 2 1_555 A U 26 A U 26 3 1_555 A A 28 A A 28 3 1_555 A G 29 A G 29 3 1_555 A G 1 A G 1 2 1_555 A MG 200 B MG 2 1_555 A A 8 A A 8 2 1_555 A U 9 A U 9 2 1_555 A A 28 A A 28 1 1_555 A G 27 A G 27 2 6_555 A G 27 A G 27 2 1_555 97 I 4 2 2