1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0003-2479-9024 Silber, M. 0000-0002-9474-9041 Muhle-Goll, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N O N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 R C N 59 N C N 60 N O N 61 N C N 62 N S N 63 N O N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N N N 72 S C N 73 N C N 74 N O N 75 N C N 76 N C N 77 N C N 78 N O N 79 N N N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N N N 92 N C N 93 N C N 94 N O N 95 N O N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N N N 102 S C N 103 N C N 104 N O N 105 N C N 106 N C N 107 N C N 108 N C N 109 N O N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C N 128 N C N 129 N C N 130 N C N 131 N N N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 N C Y 153 N C Y 154 N C Y 155 N C Y 156 N C Y 157 N C Y 158 N C N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 N C N 176 N C N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N O N 194 N O N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing Y 151 N doub Y 152 N sing Y 153 N sing N 154 N sing Y 155 N doub N 156 N sing Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing US J.Biol.Chem. JBCHA3 0071 1083-351X 298 102321 102321 10.1016/j.jbc.2022.102321 35921890 Cleavage of mitochondrial homeostasis regulator PGAM5 by the intramembrane protease PARL is governed by transmembrane helix dynamics and oligomeric state. 2022 10.2210/pdb7qal/pdb pdb_00007qal 10.13018/BMR34680 transmembrane domain 3314.816 Serine/threonine-protein phosphatase PGAM5, mitochondrial 3.1.3.16 C12L 1 syn polymer Bcl-XL-binding protein v68,Phosphoglycerate mutase family member 5 no no AFRQALQLAALGLAGGSAAVLFSAVAVGKPRAGGD AFRQALQLAALGLAGGSAAVLFSAVAVGKPRAGGD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n citation citation_author citation chem_comp_atom chem_comp_bond database_2 repository Initial release Database references Database references Data collection Database references 1 0 2022-05-04 1 1 2022-08-17 1 2 2022-09-07 1 3 2024-06-19 _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation_author.identifier_ORCID _citation.journal_volume _database_2.pdbx_DOI Germany German Research Foundation (DFG) 263531414/FOR2290 claudia.muhle@kit.edu 0000-0002-9474-9041 Claudia Muhle-Goll principal investigator/group leader Three-dimensional structure of the PGAM5 C12L mutant TMD N PDBE Y PDBE 2021-11-17 REL REL REL 9606 Human Homo sapiens sample 1 35 structures with the lowest energy 200 20 isotropic 1 2D 1H-1H NOESY isotropic 1 2D 1H-13C HSQC isotropic 1 2D 1H-15N HSQC isotropic 1 2D 1H-1H TOCSY 0.5 mM natural abundance 1 Not defined C12L 5.0 pH 1 atm 300 K simulated annealing 1 closest to the average 0.5 mM PGAM5 TMD, trifluoroethanol/water C12L trifluoroethanol/water solution Brunger A. T. et.al. refinement CNS Linge, O'Donoghue and Nilges structure calculation ARIA Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED. chemical shift assignment CcpNmr Analysis Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED. peak picking CcpNmr Analysis 600 Bruker AVANCE III ALA 2 n 1 ALA 2 A PHE 3 n 2 PHE 3 A ARG 4 n 3 ARG 4 A GLN 5 n 4 GLN 5 A ALA 6 n 5 ALA 6 A LEU 7 n 6 LEU 7 A GLN 8 n 7 GLN 8 A LEU 9 n 8 LEU 9 A ALA 10 n 9 ALA 10 A ALA 11 n 10 ALA 11 A LEU 12 n 11 LEU 12 A GLY 13 n 12 GLY 13 A LEU 14 n 13 LEU 14 A ALA 15 n 14 ALA 15 A GLY 16 n 15 GLY 16 A GLY 17 n 16 GLY 17 A SER 18 n 17 SER 18 A ALA 19 n 18 ALA 19 A ALA 20 n 19 ALA 20 A VAL 21 n 20 VAL 21 A LEU 22 n 21 LEU 22 A PHE 23 n 22 PHE 23 A SER 24 n 23 SER 24 A ALA 25 n 24 ALA 25 A VAL 26 n 25 VAL 26 A ALA 27 n 26 ALA 27 A VAL 28 n 27 VAL 28 A GLY 29 n 28 GLY 29 A LYS 30 n 29 LYS 30 A PRO 31 n 30 PRO 31 A ARG 32 n 31 ARG 32 A ALA 33 n 32 ALA 33 A GLY 34 n 33 GLY 34 A GLY 35 n 34 GLY 35 A ASP 36 n 35 ASP 36 A author_defined_assembly 1 monomeric none 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ALA 15 -157.94 54.36 5 A ALA 15 -95.30 35.47 7 A ALA 15 -145.11 40.98 8 A ALA 15 -109.25 -67.39 10 A ALA 15 -104.14 -61.53 12 A ALA 15 -162.20 34.53 13 A ALA 15 -98.39 -60.45 15 A ALA 15 -137.71 -30.88 20 A ALA 33 -94.57 54.75 N Three-dimensional structure of the PGAM5 C12L mutant TMD 1 N N A ALA 2 A ALA 1 HELX_P A ALA 11 A ALA 10 1 AA1 10 A GLY 17 A GLY 16 HELX_P A ALA 27 A ALA 26 1 AA2 11 MEMBRANE PROTEIN PARL, MITOCHONDRIA, MEMBRANE PROTEIN PGAM5_HUMAN UNP 1 2 Q96HS1 AFRQALQLAACGLAGGSAAVLFSAVAVGKPRAGGD 2 36 7QAL 2 36 Q96HS1 A 1 1 35 1 CYS engineered mutation LEU 12 7QAL A Q96HS1 UNP 12 11