1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0002-1107-6196 Ruedisser, S.H. 0000-0001-7261-128X Matabaro, E. 0000-0002-6012-3120 Sonderegger, L. 0000-0002-2911-7574 Guentert, P. 0000-0003-1275-0629 Kuenzler, M. 0000-0001-7732-495X Gossert, A.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C4 H9 N O2 103.120 n ALPHA-AMINOBUTYRIC ACID L-peptide linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C10 H19 N O3 201.263 n 4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE L-peptide linking C3 H7 N O2 89.093 D-ALANINE D-peptide linking C7 H15 N O2 145.199 n N-METHYLLEUCINE L-peptide linking C6 H13 N O2 131.173 n N-METHYLVALINE L-peptide linking C3 H7 N O2 89.093 n SARCOSINE peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N O N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N N N 18 S C N 19 N C N 20 N O N 21 N C N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N N N 31 N C N 32 S C N 33 N C N 34 N O N 35 N O N 36 R C N 37 N O N 38 R C N 39 N C N 40 N C N 41 N C N 42 N C N 43 N C N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N N N 64 R C N 65 N C N 66 N C N 67 N O N 68 N O N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N N N 77 N C N 78 S C N 79 N C N 80 N C N 81 N C N 82 N C N 83 N C N 84 N O N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N N N 102 N C N 103 S C N 104 N C N 105 N C N 106 N C N 107 N C N 108 N O N 109 N O N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 N C N 125 N C N 126 N O N 127 N C N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 S C N 138 N C N 139 N O N 140 N C N 141 N C N 142 N C N 143 N O N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N doub N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N doub N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 E doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing US J.Am.Chem.Soc. JACSAT 1520-5126 145 27601 27615 10.1021/jacs.3c09367 38062770 Conformations of Macrocyclic Peptides Sampled by Nuclear Magnetic Resonance: Models for Cell-Permeability. 2023 10.2210/pdb8q7j/pdb pdb_00008q7j Immunosuppressant Cyclic peptide 1220.625 CYCLOSPORIN A 1 nat polymer no yes (BMT)(ABA)(SAR)(MLE)V(MLE)A(DAL)(MLE)(MLE)(MVA) TAGLVLAALLV Z polypeptide(L) n n n n n n n n n n n sample 1 11 29910 Tolypocladium inflatum citation citation_author citation repository Initial release Database references Database references 1 0 2023-12-06 1 1 2023-12-20 1 2 2024-01-03 _citation.pdbx_database_id_PubMed _citation.title _citation_author.identifier_ORCID _citation_author.name _citation.journal_volume _citation.page_first _citation.page_last Switzerland Swiss National Science Foundation 31003A 173097 Japan Japan Society for the Promotion of Science (JSPS) 23K05660 alvar.gossert@biol.ethz.ch 0000-0001-7732-495X Alvar Gossert Heinrich principal investigator/group leader Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability N PDBE Y PDBE 2023-08-16 REL REL N structures with the least restraint violations 100 20 isotropic 1 2D 1H-1H NOESY isotropic 1 2D 1H-1H TOCSY isotropic 1 2D 1H-13C HSQC isotropic 1 2D 1H-13C HMBC 23 mM natural abundance High viscosity apolar solvent. 0 0 M 274 K 7 3 pH 1 0 bar 274 0.2 K simulated annealing 1 fewest violations 23 mM CYCLOSPORIN A, CDCl3/n-hexadecane-D34 60 ul CDCl3 120 ul n-hexadecaneD34 CsA CDCl3/n-hexadecane-D34 solution CCPN chemical shift assignment CcpNmr Analysis 2.5 Guntert, Mumenthaler and Wuthrich structure calculation CYANA 3.98.15 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman refinement Amber 22 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax peak picking NMRPipe 10.9 700 Bruker AVANCE NEO BMT 1 n 1 BMT 1 Z ABA 2 n 2 ABA 2 Z SAR 3 n 3 SAR 3 Z MLE 4 n 4 MLE 4 Z VAL 5 n 5 VAL 5 Z MLE 6 n 6 MLE 6 Z ALA 7 n 7 ALA 7 Z DAL 8 n 8 DAL 8 Z MLE 9 n 9 MLE 9 Z MLE 10 n 10 MLE 10 Z MVA 11 n 11 MVA 11 Z 10.3929/ethz-b-000626950 NMR free induction decay data author_and_software_defined_assembly 1 monomeric not applicable NMR Distance Restraints 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 1.0 1_555 x,y,z identity operation 0.0 0.0 0.0 1 Z ALA 7 -76.28 24.75 2 Z MLE 4 -98.74 34.51 2 Z ALA 7 -76.43 29.59 3 Z MLE 4 -97.34 35.60 3 Z ALA 7 -75.53 25.46 4 Z ALA 7 -74.46 22.36 5 Z MLE 4 -99.79 36.12 5 Z ALA 7 -77.52 28.29 6 Z ALA 7 -74.01 23.16 7 Z MLE 4 -99.58 38.41 7 Z ALA 7 -75.86 29.05 8 Z MLE 4 -99.40 37.71 8 Z ALA 7 -75.10 23.67 9 Z MLE 4 -97.91 37.27 9 Z ALA 7 -75.28 25.61 10 Z MLE 4 -98.95 36.93 10 Z ALA 7 -76.38 28.78 11 Z ALA 7 -76.21 28.35 12 Z MLE 4 -99.61 37.70 12 Z ALA 7 -74.51 24.45 13 Z ALA 7 -74.46 23.11 14 Z ALA 7 -76.18 26.24 15 Z ALA 7 -75.74 26.88 16 Z ALA 7 -76.35 28.75 17 Z MLE 4 -99.95 38.91 17 Z ALA 7 -75.78 27.40 18 Z ALA 7 -75.17 26.18 19 Z ALA 7 -77.81 27.98 20 Z ALA 7 -75.15 22.90 N Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability 1 N N covale 1.334 both Z BMT 1 A C BMT 1 1_555 Z ABA 2 A N ABA 2 1_555 covale 1.394 both Z BMT 1 A N BMT 1 1_555 Z MVA 11 A C MVA 11 1_555 covale 1.398 both Z ABA 2 A C ABA 2 1_555 Z SAR 3 A N SAR 3 1_555 covale 1.396 both Z SAR 3 A C SAR 3 1_555 Z MLE 4 A N MLE 4 1_555 covale 1.352 both Z MLE 4 A C MLE 4 1_555 Z VAL 5 A N VAL 5 1_555 covale 1.387 both Z VAL 5 A C VAL 5 1_555 Z MLE 6 A N MLE 6 1_555 covale 1.335 both Z MLE 6 A C MLE 6 1_555 Z ALA 7 A N ALA 7 1_555 covale 1.334 both Z ALA 7 A C ALA 7 1_555 Z DAL 8 A N DAL 8 1_555 covale 1.390 both Z DAL 8 A C DAL 8 1_555 Z MLE 9 A N MLE 9 1_555 covale 1.394 both Z MLE 9 A C MLE 9 1_555 Z MLE 10 A N MLE 10 1_555 covale 1.393 both Z MLE 10 A C MLE 10 1_555 Z MVA 11 A N MVA 11 1_555 IMMUNOSUPPRESSANT cyclic peptide immunosuppressant NMR exact NOEs cell-permeability, IMMUNOSUPPRESSANT Z MLE 9 A MLE 9 1 Z MLE 10 A MLE 10 6.36 Z MLE 9 A MLE 9 2 Z MLE 10 A MLE 10 -0.91 Z MLE 9 A MLE 9 3 Z MLE 10 A MLE 10 -1.06 Z MLE 9 A MLE 9 4 Z MLE 10 A MLE 10 0.19 Z MLE 9 A MLE 9 5 Z MLE 10 A MLE 10 0.70 Z MLE 9 A MLE 9 6 Z MLE 10 A MLE 10 0.60 Z MLE 9 A MLE 9 7 Z MLE 10 A MLE 10 -1.22 Z MLE 9 A MLE 9 8 Z MLE 10 A MLE 10 -0.30 Z MLE 9 A MLE 9 9 Z MLE 10 A MLE 10 -1.45 Z MLE 9 A MLE 9 10 Z MLE 10 A MLE 10 -1.64 Z MLE 9 A MLE 9 11 Z MLE 10 A MLE 10 -1.57 Z MLE 9 A MLE 9 12 Z MLE 10 A MLE 10 -1.67 Z MLE 9 A MLE 9 13 Z MLE 10 A MLE 10 0.32 Z MLE 9 A MLE 9 14 Z MLE 10 A MLE 10 -0.76 Z MLE 9 A MLE 9 15 Z MLE 10 A MLE 10 -0.86 Z MLE 9 A MLE 9 16 Z MLE 10 A MLE 10 -1.12 Z MLE 9 A MLE 9 17 Z MLE 10 A MLE 10 -1.93 Z MLE 9 A MLE 9 18 Z MLE 10 A MLE 10 0.26 Z MLE 9 A MLE 9 19 Z MLE 10 A MLE 10 -2.58 Z MLE 9 A MLE 9 20 Z MLE 10 A MLE 10 -0.55 8Q7J PDB 1 1 8Q7J 1 11 8Q7J 1 11 8Q7J Z 1 1 11