0.014307 0.000000 0.002074 0.000000 0.021444 0.000000 0.000000 0.000000 0.008417 0.000000 0.000000 0.000000 Morgunova, E. Yin, Y. Popov, A. Taipale, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 98.250 90.000 69.897 46.634 120.048 C10 H16 N3 O8 P 337.223 n 2'-deoxy-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate) DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N P N 2 N O N 3 N O N 4 N O N 5 N C N 6 R C N 7 N O N 8 S C N 9 N O N 10 N C N 11 R C N 12 N N N 13 N C N 14 N O N 15 N N N 16 N C N 17 N N N 18 N C N 19 N C N 20 N O N 21 N C N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N N N 40 S C N 41 N C N 42 N O N 43 N C N 44 N O N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N N N 53 S C N 54 N C N 55 N O N 56 N C N 57 N C N 58 N C N 59 N N N 60 N C N 61 N N N 62 N N N 63 N O N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N N N 80 S C N 81 N C N 82 N O N 83 N C N 84 N C N 85 N O N 86 N N N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 S C N 98 N C N 99 N O N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N O N 113 N P N 114 N O N 115 N O N 116 N O N 117 N C N 118 R C N 119 N O N 120 S C N 121 N O N 122 N C N 123 R C Y 124 N N Y 125 N C Y 126 N N Y 127 N C Y 128 N C N 129 N N Y 130 N N Y 131 N C Y 132 N N Y 133 N C N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N O N 149 N P N 150 N O N 151 N O N 152 N O N 153 N C N 154 R C N 155 N O N 156 S C N 157 N O N 158 N C N 159 R C N 160 N N N 161 N C N 162 N O N 163 N N N 164 N C N 165 N N N 166 N C N 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N P N 184 N O N 185 N O N 186 N O N 187 N C N 188 R C N 189 N O N 190 S C N 191 N O N 192 N C N 193 R C Y 194 N N Y 195 N C Y 196 N N Y 197 N C N 198 N C N 199 N O N 200 N N N 201 N C N 202 N N N 203 N N Y 204 N C N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N O N 220 N P N 221 N O N 222 N O N 223 N O N 224 N C N 225 R C N 226 N O N 227 S C N 228 N O N 229 N C N 230 R C N 231 N N N 232 N C N 233 N O N 234 N N N 235 N C N 236 N O N 237 N C N 238 N C N 239 N C N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N N N 256 S C N 257 N C N 258 N O N 259 N C N 260 N C N 261 N C N 262 N O N 263 N N N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N C N 282 N O N 283 N O N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 N C N 296 N C N 297 N O N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C Y 309 N C Y 310 N N Y 311 N C Y 312 N C Y 313 N N N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N O N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 S C N 333 N C N 334 N C N 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C N 355 N C N 356 N C N 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N C N 380 N N N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C N 425 N O N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 R C N 439 N O N 440 N C N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N N N 452 S C N 453 N C N 454 N O N 455 N C Y 456 N C Y 457 N C Y 458 N C Y 459 N N Y 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C N 465 N O N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N N N 479 S C N 480 N C N 481 N O N 482 N C Y 483 N C Y 484 N C Y 485 N C Y 486 N C Y 487 N C Y 488 N C N 489 N O N 490 N O N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N N N 503 S C N 504 N C N 505 N O N 506 N C N 507 N C N 508 N C N 509 N O N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N doub N 13 N sing N 14 N sing N 15 N doub N 16 N sing N 17 N doub N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing Y 132 N sing Y 133 N sing Y 134 N doub N 135 N sing Y 136 N sing Y 137 N sing Y 138 N doub N 139 N sing Y 140 N doub N 141 N sing N 142 N sing Y 143 N sing Y 144 N doub N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing Y 205 N sing Y 206 N sing Y 207 N doub N 208 N sing Y 209 N sing N 210 N sing Y 211 N doub N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N sing Y 316 N doub Y 317 N doub N 318 N sing Y 319 N sing N 320 N sing Y 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing Y 404 N doub Y 405 N sing Y 406 N sing N 407 N sing Y 408 N doub N 409 N sing Y 410 N doub N 411 N sing Y 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N doub N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N doub N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing Y 456 N doub Y 457 N sing Y 458 N sing N 459 N sing Y 460 N doub Y 461 N sing Y 462 N sing N 463 N sing Y 464 N sing Y 465 N doub N 466 N sing Y 467 N doub N 468 N sing Y 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N doub N 480 N sing N 481 N sing N 482 N sing N 483 N sing Y 484 N doub Y 485 N sing Y 486 N sing N 487 N sing Y 488 N doub N 489 N sing Y 490 N doub N 491 N sing Y 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N doub N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing To Be Published 0353 transcription factor CDX2 bound to hydroxymethylated DNA 10.2210/pdb7q4n/pdb pdb_00007q4n 100 1 N PIXEL 2018-10-29 DECTRIS PILATUS 6M-F SINGLE WAVELENGTH M x-ray 1 0.97242 1.0 ID23-1 ESRF 0.97242 SYNCHROTRON ESRF BEAMLINE ID23-1 5503.560 DNA (18-MER) 2 syn polymer 5556.660 DNA (18-MER) 2 syn polymer 8382.688 Homeobox protein CDX-2 2 man polymer 18.015 water 14 nat water CDX-3,Caudal-type homeobox protein 2 no no (DT)(DT)(DG)(DT)(DG)(DT)(DT)(DT)(DT)(DA)(DT)(DG)(DA)(DC)(DG)(DT)(DC)(DC) TTGTGTTTTATGACGTCC A,B polydeoxyribonucleotide no yes (DG)(DG)(DA)(DC)(DG)(DT)(5HC)(DA)(DT)(DA)(DA)(DA)(DA)(DC)(DA)(DC)(DA)(DA) GGACGTXATAAAACACAA D,E polydeoxyribonucleotide no no DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQ DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQ K,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human SBP sample 1 67 CDX2, CDX3 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) Rosetta PLASMID Biological sequence pET20A 1 2.16 49.18 VAPOR DIFFUSION, SITTING DROP 8.0 PEG 1500, potassium chloride, magnesium chloride, PEG 200, Bis-tris propane, 8.0 298 -8.294 1 20 A 1 D 39 1.941 A_DT1:DA39_D 1 -8.963 -0.813 0.533 -0.026 -13.392 A 2 D 38 -100.948 A_DT2:DA38_D 2 -3.240 -0.667 0.470 3.500 -2.786 1 19 A 3 D 37 -3.572 A_DG3:DC37_D 3 -5.071 -0.528 -0.279 -0.061 -2.374 1 20 A 4 D 36 -1.126 A_DT4:DA36_D 4 -5.368 0.185 -0.089 -0.091 -2.457 1 19 A 5 D 35 3.188 A_DG5:DC35_D 5 -6.984 -0.247 -0.074 -0.045 5.003 1 20 A 6 D 34 2.065 A_DT6:DA34_D 6 -12.339 -0.479 -0.735 0.058 -1.573 1 20 A 7 D 33 -0.600 A_DT7:DA33_D 7 -11.166 0.292 0.018 -0.106 -10.797 1 20 A 8 D 32 -0.811 A_DT8:DA32_D 8 -3.652 -0.041 0.576 -0.194 -5.261 1 20 A 9 D 31 2.235 A_DT9:DA31_D 9 -7.677 0.035 -0.006 -0.153 -2.822 1 20 A 10 D 30 0.064 A_DA10:DT30_D 10 -0.511 0.568 1.021 -0.406 -6.474 1 20 A 11 D 29 -6.232 A_DT11:DA29_D 11 -6.685 -0.582 0.510 0.040 10.813 1 19 A 12 D 28 7.915 A_DG12:5HC28_D 12 -8.510 -0.837 0.597 -0.028 3.101 1 20 A 13 D 27 -3.017 A_DA13:DT27_D 13 0.339 0.123 0.140 -0.053 6.631 1 19 A 14 D 26 0.178 A_DC14:DG26_D 14 -4.679 0.347 -0.146 -0.052 -0.339 1 19 A 15 D 25 -2.304 A_DG15:DC25_D 15 -4.989 0.489 0.122 0.069 6.491 1 20 A 16 D 24 -0.754 A_DT16:DA24_D 16 -2.066 0.137 -0.007 0.001 -2.443 1 19 A 17 D 23 1.607 A_DC17:DG23_D 17 1.136 -0.112 0.288 -0.035 -8.231 1 20 B 1 E 39 1.168 B_DT1:DA39_E 18 -8.990 -0.869 0.582 -0.048 -12.112 B 2 E 38 -102.504 B_DT2:DA38_E 19 -3.520 -0.722 0.451 3.580 -1.792 1 19 B 3 E 37 -4.202 B_DG3:DC37_E 20 -6.164 -0.511 -0.226 -0.036 -2.357 1 20 B 4 E 36 -1.596 B_DT4:DA36_E 21 -6.402 0.199 -0.049 -0.103 -2.941 1 19 B 5 E 35 2.052 B_DG5:DC35_E 22 -7.371 -0.235 -0.044 -0.063 4.319 1 20 B 6 E 34 0.888 B_DT6:DA34_E 23 -11.968 -0.486 -0.682 0.055 -1.741 1 20 B 7 E 33 -1.904 B_DT7:DA33_E 24 -11.370 0.280 0.002 -0.098 -11.014 1 20 B 8 E 32 -1.460 B_DT8:DA32_E 25 -3.584 -0.049 0.544 -0.177 -4.774 1 20 B 9 E 31 1.925 B_DT9:DA31_E 26 -8.092 0.046 -0.043 -0.157 -2.302 1 20 B 10 E 30 0.283 B_DA10:DT30_E 27 -0.485 0.567 1.040 -0.419 -6.382 1 20 B 11 E 29 -6.968 B_DT11:DA29_E 28 -6.793 -0.623 0.514 0.012 10.329 1 19 B 12 E 28 7.297 B_DG12:5HC28_E 29 -8.107 -0.841 0.608 -0.055 3.042 1 20 B 13 E 27 -3.721 B_DA13:DT27_E 30 0.894 0.139 0.140 -0.065 6.388 1 19 B 14 E 26 -0.082 B_DC14:DG26_E 31 -4.497 0.322 -0.123 -0.075 0.198 1 19 B 15 E 25 -2.311 B_DG15:DC25_E 32 -4.046 0.429 0.124 0.051 7.059 1 20 B 16 E 24 0.030 B_DT16:DA24_E 33 -1.665 0.078 0.025 -0.005 -1.172 1 19 B 17 E 23 1.131 B_DC17:DG23_E 34 1.403 -0.133 0.341 -0.036 12.317 B 18 E 22 -50.981 B_DC18:DG22_E 35 -3.185 -0.251 0.848 0.206 2.975 88.791 A A 1 2 1.143 D D 39 38 2.965 1.599 1.159 -0.821 AA_DT1DT2:DA38DA39_DD 1 2.125 -1.519 88.760 -0.617 -0.788 4.277 -4.711 A A 2 3 19.327 D D 38 37 3.455 -1.393 1.515 3.349 AA_DT2DG3:DC37DA38_DD 2 -3.339 -46.312 -3.018 -23.795 -22.196 3.338 30.036 A A 3 4 7.202 D D 37 36 3.329 3.717 -0.245 0.217 AA_DG3DT4:DA36DC37_DD 3 -3.025 5.861 29.659 -0.365 -0.165 3.340 36.502 A A 4 5 5.056 D D 36 35 3.351 3.163 0.218 0.148 AA_DT4DG5:DC35DA36_DD 4 -1.528 2.444 36.338 -0.212 -0.565 2.905 32.272 A A 5 6 -0.430 D D 35 34 2.954 -0.238 -0.184 -0.585 AA_DG5DT6:DA34DC35_DD 5 4.536 -8.186 31.960 -1.014 1.055 3.638 41.270 A A 6 7 0.599 D D 34 33 3.652 0.421 -0.119 -0.498 AA_DT6DT7:DA33DA34_DD 6 -4.661 6.626 41.016 -0.757 -0.391 3.493 40.130 A A 7 8 -3.979 D D 33 32 3.482 -2.728 0.680 -0.052 AA_DT7DT8:DA32DA33_DD 7 0.951 -1.387 40.031 0.256 -0.875 2.786 36.188 A A 8 9 13.916 D D 32 31 2.975 8.513 -0.202 -0.066 AA_DT8DT9:DA31DA32_DD 8 7.178 -11.735 34.486 -1.189 1.237 2.878 32.428 A A 9 10 9.793 D D 31 30 3.182 5.428 0.626 -0.902 AA_DT9DA10:DT30DA31_DD 9 -4.478 8.080 31.676 -2.510 -1.859 2.877 23.024 A A 10 11 8.798 D D 30 29 3.376 3.482 -1.113 -1.510 AA_DA10DT11:DA29DT30_DD 10 3.920 -9.905 22.427 -4.968 4.123 2.869 37.627 A A 11 12 11.734 D D 29 28 2.922 7.510 0.768 0.439 AA_DT11DG12:5HC28DA29_DD 11 -3.561 5.564 36.729 -0.194 -1.606 3.548 37.979 A A 12 13 5.174 D D 28 27 3.486 3.355 -1.408 -0.820 AA_DG12DA13:DT275HC28_DD 12 -4.747 7.322 37.547 -1.723 1.509 3.452 30.231 A A 13 14 -1.096 D D 27 26 3.430 -0.572 0.554 -0.611 AA_DA13DC14:DG26DT27_DD 13 0.730 -1.399 30.217 -1.050 -0.907 3.192 39.608 A A 14 15 4.637 D D 26 25 3.265 3.139 0.216 -0.874 AA_DC14DG15:DC25DG26_DD 14 0.597 -0.882 39.484 -1.653 -0.249 3.184 27.349 A A 15 16 -2.158 D D 25 24 3.190 -1.020 -0.730 -0.659 AA_DG15DT16:DA24DC25_DD 15 0.983 -2.080 27.313 -1.148 1.781 3.900 35.233 A A 16 17 0.850 D D 24 23 3.868 0.514 1.036 -0.243 AA_DT16DC17:DG23DA24_DD 16 1.340 -2.215 35.204 -0.493 -1.475 2.972 88.321 B B 1 2 1.119 E E 39 38 2.962 1.559 1.142 -0.812 BB_DT1DT2:DA38DA39_EE 17 2.197 -1.577 88.288 -0.613 -0.777 4.263 -4.167 B B 2 3 17.184 E E 38 37 3.427 -1.115 1.520 3.320 BB_DT2DG3:DC37DA38_EE 18 -2.831 -43.640 -2.848 -28.853 -21.760 3.358 30.540 B B 3 4 6.925 E E 37 36 3.345 3.634 -0.250 0.237 BB_DG3DT4:DA36DC37_EE 19 -2.896 5.519 30.193 -0.294 -0.118 3.338 37.555 B B 4 5 4.588 E E 36 35 3.344 2.950 0.242 0.179 BB_DT4DG5:DC35DA36_EE 20 -1.358 2.111 37.420 -0.115 -0.557 2.921 32.190 B B 5 6 -0.920 E E 35 34 2.961 -0.509 -0.177 -0.603 BB_DG5DT6:DA34DC35_EE 21 4.345 -7.859 31.899 -1.005 1.020 3.623 41.243 B B 6 7 0.141 E E 34 33 3.629 0.099 -0.120 -0.517 BB_DT6DT7:DA33DA34_EE 22 -3.956 5.624 41.061 -0.746 -0.303 3.490 40.786 B B 7 8 -4.077 E E 33 32 3.480 -2.839 0.658 -0.036 BB_DT7DT8:DA32DA33_EE 23 1.000 -1.436 40.679 0.282 -0.827 2.772 36.236 B B 8 9 14.370 E E 32 31 2.958 8.795 -0.148 -0.069 BB_DT8DT9:DA31DA32_EE 24 7.257 -11.856 34.453 -1.221 1.154 2.880 32.758 B B 9 10 9.008 E E 31 30 3.188 5.041 0.638 -0.907 BB_DT9DA10:DT30DA31_EE 25 -5.154 9.210 31.976 -2.424 -1.965 2.873 22.794 B B 10 11 9.102 E E 30 29 3.399 3.564 -1.132 -1.519 BB_DA10DT11:DA29DT30_EE 26 4.030 -10.292 22.159 -5.085 4.270 2.907 38.270 B B 11 12 11.695 E E 29 28 2.956 7.608 0.773 0.478 BB_DT11DG12:5HC28DA29_EE 27 -3.747 5.760 37.353 -0.138 -1.606 3.537 37.575 B B 12 13 5.524 E E 28 27 3.493 3.546 -1.395 -0.825 BB_DG12DA13:DT275HC28_EE 28 -4.334 6.751 37.171 -1.780 1.556 3.476 29.552 B B 13 14 -1.740 E E 27 26 3.447 -0.887 0.562 -0.638 BB_DA13DC14:DG26DT27_EE 29 0.633 -1.242 29.532 -1.052 -0.960 3.169 39.739 B B 14 15 4.413 E E 26 25 3.236 2.997 0.226 -0.873 BB_DC14DG15:DC25DG26_EE 30 0.805 -1.186 39.622 -1.626 -0.240 3.170 27.269 B B 15 16 -0.216 E E 25 24 3.187 -0.102 -0.712 -0.661 BB_DG15DT16:DA24DC25_EE 31 0.732 -1.553 27.260 -1.378 1.689 3.888 35.227 B B 16 17 0.751 E E 24 23 3.853 0.454 1.082 -0.247 BB_DT16DC17:DG23DA24_EE 32 1.388 -2.294 35.198 -0.488 -1.544 2.779 -13.952 B B 17 18 4.098 E E 23 22 2.939 -0.985 -0.385 0.424 BB_DC17DC18:DG22DG23_EE 33 -3.408 -14.185 -13.495 -0.906 -4.492 chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Data collection Refinement description 1 0 2022-11-16 1 1 2024-01-31 Not funded ajt208@cam.ac.uk 0000-0003-4204-0951 Jussi Taipale principal investigator/group leader N PDBE Y PDBE 2021-11-01 REL REL HOH water 9606 Homo sapiens sample 1 18 9606 Homo sapiens sample 1 18 N 5LTY PDB experimental model HOH 11 4 HOH HOH 101 A HOH 13 4 HOH HOH 102 A HOH 14 4 HOH HOH 101 D HOH 4 4 HOH HOH 301 K HOH 10 4 HOH HOH 302 K HOH 3 4 HOH HOH 303 K HOH 9 4 HOH HOH 304 K HOH 1 4 HOH HOH 101 B HOH 12 4 HOH HOH 102 B HOH 8 4 HOH HOH 101 E HOH 6 4 HOH HOH 102 E HOH 5 4 HOH HOH 301 C HOH 2 4 HOH HOH 302 C HOH 7 4 HOH HOH 303 C DT 1 n 1 DT 1 A DT 2 n 2 DT 2 A DG 3 n 3 DG 3 A DT 4 n 4 DT 4 A DG 5 n 5 DG 5 A DT 6 n 6 DT 6 A DT 7 n 7 DT 7 A DT 8 n 8 DT 8 A DT 9 n 9 DT 9 A DA 10 n 10 DA 10 A DT 11 n 11 DT 11 A DG 12 n 12 DG 12 A DA 13 n 13 DA 13 A DC 14 n 14 DC 14 A DG 15 n 15 DG 15 A DT 16 n 16 DT 16 A DC 17 n 17 DC 17 A DC 18 n 18 DC 18 A DG 22 n 1 DG 22 D DG 23 n 2 DG 23 D DA 24 n 3 DA 24 D DC 25 n 4 DC 25 D DG 26 n 5 DG 26 D DT 27 n 6 DT 27 D 5HC 28 n 7 5HC 28 D DA 29 n 8 DA 29 D DT 30 n 9 DT 30 D DA 31 n 10 DA 31 D DA 32 n 11 DA 32 D DA 33 n 12 DA 33 D DA 34 n 13 DA 34 D DC 35 n 14 DC 35 D DA 36 n 15 DA 36 D DC 37 n 16 DC 37 D DA 38 n 17 DA 38 D DA 39 n 18 DA 39 D ASP 187 n 1 ASP 187 K LYS 188 n 2 LYS 188 K TYR 189 n 3 TYR 189 K ARG 190 n 4 ARG 190 K VAL 191 n 5 VAL 191 K VAL 192 n 6 VAL 192 K TYR 193 n 7 TYR 193 K THR 194 n 8 THR 194 K ASP 195 n 9 ASP 195 K HIS 196 n 10 HIS 196 K GLN 197 n 11 GLN 197 K ARG 198 n 12 ARG 198 K LEU 199 n 13 LEU 199 K GLU 200 n 14 GLU 200 K LEU 201 n 15 LEU 201 K GLU 202 n 16 GLU 202 K LYS 203 n 17 LYS 203 K GLU 204 n 18 GLU 204 K PHE 205 n 19 PHE 205 K HIS 206 n 20 HIS 206 K TYR 207 n 21 TYR 207 K SER 208 n 22 SER 208 K ARG 209 n 23 ARG 209 K TYR 210 n 24 TYR 210 K ILE 211 n 25 ILE 211 K THR 212 n 26 THR 212 K ILE 213 n 27 ILE 213 K ARG 214 n 28 ARG 214 K ARG 215 n 29 ARG 215 K LYS 216 n 30 LYS 216 K ALA 217 n 31 ALA 217 K GLU 218 n 32 GLU 218 K LEU 219 n 33 LEU 219 K ALA 220 n 34 ALA 220 K ALA 221 n 35 ALA 221 K THR 222 n 36 THR 222 K LEU 223 n 37 LEU 223 K GLY 224 n 38 GLY 224 K LEU 225 n 39 LEU 225 K SER 226 n 40 SER 226 K GLU 227 n 41 GLU 227 K ARG 228 n 42 ARG 228 K GLN 229 n 43 GLN 229 K VAL 230 n 44 VAL 230 K LYS 231 n 45 LYS 231 K ILE 232 n 46 ILE 232 K TRP 233 n 47 TRP 233 K PHE 234 n 48 PHE 234 K GLN 235 n 49 GLN 235 K ASN 236 n 50 ASN 236 K ARG 237 n 51 ARG 237 K ARG 238 n 52 ARG 238 K ALA 239 n 53 ALA 239 K LYS 240 n 54 LYS 240 K GLU 241 n 55 GLU 241 K ARG 242 n 56 ARG 242 K LYS 243 n 57 LYS 243 K ILE 244 n 58 ILE 244 K ASN 245 n 59 ASN 245 K LYS 246 n 60 LYS 246 K LYS 247 n 61 LYS 247 K LYS 248 n 62 LYS 248 K LEU 249 n 63 LEU 249 K GLN 250 n 64 GLN 250 K GLN 251 n 65 GLN 251 K GLN 252 n 66 GLN 252 K n 67 253 K DT 1 n 1 DT 1 B DT 2 n 2 DT 2 B DG 3 n 3 DG 3 B DT 4 n 4 DT 4 B DG 5 n 5 DG 5 B DT 6 n 6 DT 6 B DT 7 n 7 DT 7 B DT 8 n 8 DT 8 B DT 9 n 9 DT 9 B DA 10 n 10 DA 10 B DT 11 n 11 DT 11 B DG 12 n 12 DG 12 B DA 13 n 13 DA 13 B DC 14 n 14 DC 14 B DG 15 n 15 DG 15 B DT 16 n 16 DT 16 B DC 17 n 17 DC 17 B DC 18 n 18 DC 18 B DG 22 n 1 DG 22 E DG 23 n 2 DG 23 E DA 24 n 3 DA 24 E DC 25 n 4 DC 25 E DG 26 n 5 DG 26 E DT 27 n 6 DT 27 E 5HC 28 n 7 5HC 28 E DA 29 n 8 DA 29 E DT 30 n 9 DT 30 E DA 31 n 10 DA 31 E DA 32 n 11 DA 32 E DA 33 n 12 DA 33 E DA 34 n 13 DA 34 E DC 35 n 14 DC 35 E DA 36 n 15 DA 36 E DC 37 n 16 DC 37 E DA 38 n 17 DA 38 E DA 39 n 18 DA 39 E n 1 187 C n 2 188 C TYR 189 n 3 TYR 189 C ARG 190 n 4 ARG 190 C VAL 191 n 5 VAL 191 C VAL 192 n 6 VAL 192 C TYR 193 n 7 TYR 193 C THR 194 n 8 THR 194 C ASP 195 n 9 ASP 195 C HIS 196 n 10 HIS 196 C GLN 197 n 11 GLN 197 C ARG 198 n 12 ARG 198 C LEU 199 n 13 LEU 199 C GLU 200 n 14 GLU 200 C LEU 201 n 15 LEU 201 C GLU 202 n 16 GLU 202 C LYS 203 n 17 LYS 203 C GLU 204 n 18 GLU 204 C PHE 205 n 19 PHE 205 C HIS 206 n 20 HIS 206 C TYR 207 n 21 TYR 207 C SER 208 n 22 SER 208 C ARG 209 n 23 ARG 209 C TYR 210 n 24 TYR 210 C ILE 211 n 25 ILE 211 C THR 212 n 26 THR 212 C ILE 213 n 27 ILE 213 C ARG 214 n 28 ARG 214 C ARG 215 n 29 ARG 215 C LYS 216 n 30 LYS 216 C ALA 217 n 31 ALA 217 C GLU 218 n 32 GLU 218 C LEU 219 n 33 LEU 219 C ALA 220 n 34 ALA 220 C ALA 221 n 35 ALA 221 C THR 222 n 36 THR 222 C LEU 223 n 37 LEU 223 C GLY 224 n 38 GLY 224 C LEU 225 n 39 LEU 225 C SER 226 n 40 SER 226 C GLU 227 n 41 GLU 227 C ARG 228 n 42 ARG 228 C GLN 229 n 43 GLN 229 C VAL 230 n 44 VAL 230 C LYS 231 n 45 LYS 231 C ILE 232 n 46 ILE 232 C TRP 233 n 47 TRP 233 C PHE 234 n 48 PHE 234 C GLN 235 n 49 GLN 235 C ASN 236 n 50 ASN 236 C ARG 237 n 51 ARG 237 C ARG 238 n 52 ARG 238 C ALA 239 n 53 ALA 239 C LYS 240 n 54 LYS 240 C GLU 241 n 55 GLU 241 C ARG 242 n 56 ARG 242 C LYS 243 n 57 LYS 243 C ILE 244 n 58 ILE 244 C ASN 245 n 59 ASN 245 C LYS 246 n 60 LYS 246 C LYS 247 n 61 LYS 247 C LYS 248 n 62 LYS 248 C LEU 249 n 63 LEU 249 C GLN 250 n 64 GLN 250 C GLN 251 n 65 GLN 251 C n 66 252 C n 67 253 C 6.6561 -0.8538 0.9254 4.0848 0.7967 2.8314 0.4237 0.7153 -0.4312 -0.5450 -0.6999 0.2673 0.1660 0.1957 0.2762 0.4059 0.2469 0.2908 0.2291 0.0663 0.5732 refined -19.0163 -7.1777 -20.0309 X-RAY DIFFRACTION 6.4396 2.3837 0.9924 5.3091 0.8510 4.8694 0.3633 -0.4622 -0.0601 -0.0988 -0.4806 -0.1985 -0.0810 0.0300 0.1174 0.1366 0.0446 0.2080 0.0949 0.1212 0.5115 refined -20.2711 -1.8675 -9.1209 X-RAY DIFFRACTION 7.4767 3.3932 -1.1521 6.2722 1.0016 3.0998 0.1666 -0.5316 0.4935 0.1505 -0.3961 0.0250 -0.1692 0.4640 0.2296 0.3210 -0.1896 -0.0222 0.1890 0.0381 0.5540 refined -17.6084 -5.0038 19.0437 X-RAY DIFFRACTION 5.9408 -2.9750 0.7090 4.4111 -1.0023 4.5747 0.2029 0.4884 0.1623 -0.1957 -0.3288 -0.2220 0.0587 0.0093 0.1258 0.1523 -0.0796 0.0608 0.1264 0.0693 0.5782 refined -19.8465 -10.4829 7.5757 X-RAY DIFFRACTION A 1 A 18 X-RAY DIFFRACTION 1 D 22 D 39 X-RAY DIFFRACTION 1 K 187 K 252 X-RAY DIFFRACTION 2 B 1 B 18 X-RAY DIFFRACTION 3 E 22 E 39 X-RAY DIFFRACTION 3 C 189 C 251 X-RAY DIFFRACTION 4 author_and_software_defined_assembly PISA 3 trimeric author_and_software_defined_assembly PISA 3 trimeric isothermal titration calorimetry isothermal titration calorimetry 3750 -16 10400 3630 -21 9950 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 K GLN 253 C GLN 67 1 Y 1 C ASP 187 F ASP 1 1 Y 1 C LYS 188 F LYS 2 1 Y 1 C GLN 252 F GLN 66 1 Y 1 C GLN 253 F GLN 67 1 Y 1 B E N4 O6 DC DG 18 22 1.87 1 C C OE1 O GLU HOH 241 301 2.11 1 2.08 0.30 108.30 110.38 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 -5.05 0.80 102.40 97.35 A A A C3' C2' C1' DT DT DT 4 4 4 N 1 2.40 0.30 108.30 110.70 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 7.06 1.10 110.50 117.56 A A A O3' P OP2 DT DT DT 8 9 9 Y 1 -2.79 0.40 104.50 101.71 A A A O4' C4' C3' DA DA DA 10 10 10 N 1 -7.44 1.00 110.10 102.66 A A A C1' O4' C4' DA DA DA 10 10 10 N 1 -10.08 1.20 119.70 109.62 A A A C3' O3' P DT DT DC 16 16 17 Y 1 -6.46 1.00 110.10 103.64 A A A C1' O4' C4' DC DC DC 18 18 18 N 1 4.81 0.30 108.30 113.11 A A A O4' C1' N1 DC DC DC 18 18 18 N 1 13.19 1.20 119.70 132.89 D D D C3' O3' P DG DG DG 22 22 23 Y 1 6.18 0.30 108.30 114.48 D D D O4' C1' N9 DG DG DG 23 23 23 N 1 8.44 1.20 119.70 128.14 D D D C3' O3' P DG DG DA 23 23 24 Y 1 3.44 0.30 108.30 111.74 D D D O4' C1' N9 DA DA DA 24 24 24 N 1 -11.47 1.90 104.00 92.53 D D D O3' P O5' DA DC DC 24 25 25 Y 1 2.60 0.30 108.30 110.90 D D D O4' C1' N1 DC DC DC 25 25 25 N 1 -7.81 1.20 119.70 111.89 D D D C3' O3' P DG DG DT 26 26 27 Y 1 7.03 1.10 110.50 117.53 D D D O3' P OP1 DA DT DT 29 30 30 Y 1 -5.07 0.80 102.40 97.33 D D D C3' C2' C1' DA DA DA 32 32 32 N 1 -4.94 0.80 105.90 100.96 D D D O4' C1' C2' DA DA DA 32 32 32 N 1 -11.68 1.20 119.70 108.02 D D D C3' O3' P DA DA DA 32 32 33 Y 1 -8.89 1.20 119.70 110.81 D D D C3' O3' P DA DA DA 38 38 39 Y 1 -5.58 0.80 102.40 96.82 B B B C3' C2' C1' DT DT DT 4 4 4 N 1 -6.85 1.00 110.10 103.25 B B B C1' O4' C4' DA DA DA 10 10 10 N 1 -10.02 1.20 119.70 109.68 B B B C3' O3' P DT DT DC 16 16 17 Y 1 3.31 0.30 108.30 111.61 B B B O4' C1' N1 DC DC DC 18 18 18 N 1 4.01 0.60 118.90 122.91 B B B N1 C2 O2 DC DC DC 18 18 18 N 1 9.78 1.20 119.70 129.48 E E E C3' O3' P DG DG DG 22 22 23 Y 1 5.38 0.30 108.30 113.68 E E E O4' C1' N9 DG DG DG 23 23 23 N 1 2.48 0.30 108.30 110.78 E E E O4' C1' N9 DA DA DA 24 24 24 N 1 -2.63 0.40 104.50 101.87 E E E O4' C4' C3' DC DC DC 25 25 25 N 1 -7.30 1.00 110.10 102.80 E E E C1' O4' C4' DC DC DC 25 25 25 N 1 2.76 0.30 108.30 111.06 E E E O4' C1' N1 DC DC DC 25 25 25 N 1 -5.66 0.80 102.40 96.74 E E E C3' C2' C1' DA DA DA 32 32 32 N 1 -10.47 1.20 119.70 109.23 E E E C3' O3' P DA DA DA 32 32 33 Y 1 -7.54 1.20 119.70 112.16 E E E C3' O3' P DA DA DA 38 38 39 Y 1 A A P OP3 DT DT 1 1 -0.087 0.012 1.607 1.520 N 1 B B P OP3 DT DT 1 1 -0.082 0.012 1.607 1.525 N 1 B B P O5' DC DC 18 18 0.066 0.010 1.593 1.659 N 1 E E P OP1 DG DG 22 22 0.116 0.017 1.485 1.601 N 1 D B OP1 O3' DG DC 23 18 2.19 1_555 2_465 1 K ARG 209 -64.93 0.53 1 K GLN 251 68.99 -43.41 1 C TYR 193 55.57 114.60 1 C LYS 248 -63.91 55.05 1 C GLN 250 -36.67 145.39 175.540 70.6050 31.000 3.8800 0.0000 -1.7100 -6.2000 0.0000 2.7100 0.9330 0.8860 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED 0.2794 0.2378 0.2400 3.2000 43.4500 341 6054 5.3000 98.1600 82.2250 0.5990 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.6050 0.8000 0.8000 1.2000 5LTY MAXIMUM LIKELIHOOD MASK 3.2000 43.4500 14 2636 49.98 0 1484 1138 201 0.009 0.012 2816 0.002 0.016 1987 2.264 1.711 4096 1.062 1.568 4613 5.738 5.000 127 28.499 19.286 84 29.339 15.000 249 16.855 15.000 18 0.138 0.200 429 0.009 0.020 2123 0.002 0.020 561 1 A 1 3612 X-RAY DIFFRACTION interatomic distance 0.070 0.050 2 B 1 3612 X-RAY DIFFRACTION interatomic distance 0.070 0.050 1 K 2 1850 X-RAY DIFFRACTION interatomic distance 0.220 0.050 2 C 2 1850 X-RAY DIFFRACTION interatomic distance 0.220 0.050 0.3150 0.0000 0.2710 3.2830 34 423 457 20 97.0300 3.030 43.450 7Q4N 7406 0.975 0.272 0.155 0.315 1 4.500 3.800 97.000 1.409 3.030 3.210 4054 1092 0.745 0.788 1.623 1 1.300 3.700 89.300 0.080 9.090 43.410 1036 298 0.995 0.048 0.094 1 10.300 3.500 96.200 refinement REFMAC 5.8.0267 data scaling Aimless 0.7.3 data extraction PDB_EXTRACT 3.27 data reduction XDS phasing PHASER N transcription factor CDX2 bound to hydroxymethylated DNA 1 N N 2 N N 3 N N 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N K THR 194 C THR 8 HELX_P K SER 208 C SER 22 1 AA1 15 K THR 212 C THR 26 HELX_P K LEU 223 C LEU 37 1 AA2 12 K SER 226 C SER 40 HELX_P K LYS 248 C LYS 62 1 AA3 23 C THR 194 F THR 8 HELX_P C SER 208 F SER 22 1 AA4 15 C THR 212 F THR 26 HELX_P C LEU 223 F LEU 37 1 AA5 12 C SER 226 F SER 40 HELX_P C LYS 248 F LYS 62 1 AA6 23 covale 1.612 both D DT 27 B O3' DT 6 1_555 D 5HC 28 B P 5HC 7 1_555 covale 1.617 both D 5HC 28 B O3' 5HC 7 1_555 D DA 29 B P DA 8 1_555 covale 1.603 both E DT 27 E O3' DT 6 1_555 E 5HC 28 E P 5HC 7 1_555 covale 1.614 both E 5HC 28 E O3' 5HC 7 1_555 E DA 29 E P DA 8 1_555 hydrog WATSON-CRICK A DT 1 A N3 DT 1 1_555 D DA 39 B N1 DA 18 1_555 hydrog WATSON-CRICK A DT 1 A O4 DT 1 1_555 D DA 39 B N6 DA 18 1_555 hydrog DT-DA PAIR A DT 2 A O4 DT 2 1_555 D DA 38 B N6 DA 17 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 D DC 37 B N3 DC 16 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 D DC 37 B O2 DC 16 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 D DC 37 B N4 DC 16 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 D DA 36 B N1 DA 15 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 D DA 36 B N6 DA 15 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 D DC 35 B N3 DC 14 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 D DC 35 B O2 DC 14 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 D DC 35 B N4 DC 14 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 D DA 34 B N1 DA 13 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 D DA 34 B N6 DA 13 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 D DA 33 B N1 DA 12 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 D DA 33 B N6 DA 12 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 D DA 32 B N1 DA 11 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 D DA 32 B N6 DA 11 1_555 hydrog WATSON-CRICK A DT 9 A N3 DT 9 1_555 D DA 31 B N1 DA 10 1_555 hydrog WATSON-CRICK A DT 9 A O4 DT 9 1_555 D DA 31 B N6 DA 10 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 10 1_555 D DT 30 B N3 DT 9 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 10 1_555 D DT 30 B O4 DT 9 1_555 hydrog WATSON-CRICK A DT 11 A N3 DT 11 1_555 D DA 29 B N1 DA 8 1_555 hydrog WATSON-CRICK A DT 11 A O4 DT 11 1_555 D DA 29 B N6 DA 8 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 D 5HC 28 B N3 5HC 7 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 D 5HC 28 B O2 5HC 7 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 D 5HC 28 B N4 5HC 7 1_555 hydrog WATSON-CRICK A DA 13 A N1 DA 13 1_555 D DT 27 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 13 A N6 DA 13 1_555 D DT 27 B O4 DT 6 1_555 hydrog WATSON-CRICK A DC 14 A N3 DC 14 1_555 D DG 26 B N1 DG 5 1_555 hydrog WATSON-CRICK A DC 14 A N4 DC 14 1_555 D DG 26 B O6 DG 5 1_555 hydrog WATSON-CRICK A DC 14 A O2 DC 14 1_555 D DG 26 B N2 DG 5 1_555 hydrog WATSON-CRICK A DG 15 A N1 DG 15 1_555 D DC 25 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 15 A N2 DG 15 1_555 D DC 25 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 15 A O6 DG 15 1_555 D DC 25 B N4 DC 4 1_555 hydrog WATSON-CRICK A DT 16 A N3 DT 16 1_555 D DA 24 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 16 A O4 DT 16 1_555 D DA 24 B N6 DA 3 1_555 hydrog WATSON-CRICK A DC 17 A N3 DC 17 1_555 D DG 23 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 17 A N4 DC 17 1_555 D DG 23 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 17 A O2 DC 17 1_555 D DG 23 B N2 DG 2 1_555 hydrog WATSON-CRICK B DT 1 D N3 DT 1 1_555 E DA 39 E N1 DA 18 1_555 hydrog WATSON-CRICK B DT 1 D O4 DT 1 1_555 E DA 39 E N6 DA 18 1_555 hydrog DT-DA PAIR B DT 2 D O4 DT 2 1_555 E DA 38 E N6 DA 17 1_555 hydrog WATSON-CRICK B DG 3 D N1 DG 3 1_555 E DC 37 E N3 DC 16 1_555 hydrog WATSON-CRICK B DG 3 D N2 DG 3 1_555 E DC 37 E O2 DC 16 1_555 hydrog WATSON-CRICK B DG 3 D O6 DG 3 1_555 E DC 37 E N4 DC 16 1_555 hydrog WATSON-CRICK B DT 4 D N3 DT 4 1_555 E DA 36 E N1 DA 15 1_555 hydrog WATSON-CRICK B DT 4 D O4 DT 4 1_555 E DA 36 E N6 DA 15 1_555 hydrog WATSON-CRICK B DG 5 D N1 DG 5 1_555 E DC 35 E N3 DC 14 1_555 hydrog WATSON-CRICK B DG 5 D N2 DG 5 1_555 E DC 35 E O2 DC 14 1_555 hydrog WATSON-CRICK B DG 5 D O6 DG 5 1_555 E DC 35 E N4 DC 14 1_555 hydrog WATSON-CRICK B DT 6 D N3 DT 6 1_555 E DA 34 E N1 DA 13 1_555 hydrog WATSON-CRICK B DT 6 D O4 DT 6 1_555 E DA 34 E N6 DA 13 1_555 hydrog WATSON-CRICK B DT 7 D N3 DT 7 1_555 E DA 33 E N1 DA 12 1_555 hydrog WATSON-CRICK B DT 7 D O4 DT 7 1_555 E DA 33 E N6 DA 12 1_555 hydrog WATSON-CRICK B DT 8 D N3 DT 8 1_555 E DA 32 E N1 DA 11 1_555 hydrog WATSON-CRICK B DT 8 D O4 DT 8 1_555 E DA 32 E N6 DA 11 1_555 hydrog WATSON-CRICK B DT 9 D N3 DT 9 1_555 E DA 31 E N1 DA 10 1_555 hydrog WATSON-CRICK B DT 9 D O4 DT 9 1_555 E DA 31 E N6 DA 10 1_555 hydrog WATSON-CRICK B DA 10 D N1 DA 10 1_555 E DT 30 E N3 DT 9 1_555 hydrog WATSON-CRICK B DA 10 D N6 DA 10 1_555 E DT 30 E O4 DT 9 1_555 hydrog WATSON-CRICK B DT 11 D N3 DT 11 1_555 E DA 29 E N1 DA 8 1_555 hydrog WATSON-CRICK B DT 11 D O4 DT 11 1_555 E DA 29 E N6 DA 8 1_555 hydrog WATSON-CRICK B DG 12 D N1 DG 12 1_555 E 5HC 28 E N3 5HC 7 1_555 hydrog WATSON-CRICK B DG 12 D N2 DG 12 1_555 E 5HC 28 E O2 5HC 7 1_555 hydrog WATSON-CRICK B DG 12 D O6 DG 12 1_555 E 5HC 28 E N4 5HC 7 1_555 hydrog WATSON-CRICK B DA 13 D N1 DA 13 1_555 E DT 27 E N3 DT 6 1_555 hydrog WATSON-CRICK B DA 13 D N6 DA 13 1_555 E DT 27 E O4 DT 6 1_555 hydrog WATSON-CRICK B DC 14 D N3 DC 14 1_555 E DG 26 E N1 DG 5 1_555 hydrog WATSON-CRICK B DC 14 D N4 DC 14 1_555 E DG 26 E O6 DG 5 1_555 hydrog WATSON-CRICK B DC 14 D O2 DC 14 1_555 E DG 26 E N2 DG 5 1_555 hydrog WATSON-CRICK B DG 15 D N1 DG 15 1_555 E DC 25 E N3 DC 4 1_555 hydrog WATSON-CRICK B DG 15 D N2 DG 15 1_555 E DC 25 E O2 DC 4 1_555 hydrog WATSON-CRICK B DG 15 D O6 DG 15 1_555 E DC 25 E N4 DC 4 1_555 hydrog WATSON-CRICK B DT 16 D N3 DT 16 1_555 E DA 24 E N1 DA 3 1_555 hydrog WATSON-CRICK B DT 16 D O4 DT 16 1_555 E DA 24 E N6 DA 3 1_555 hydrog WATSON-CRICK B DC 17 D N3 DC 17 1_555 E DG 23 E N1 DG 2 1_555 hydrog WATSON-CRICK B DC 17 D N4 DC 17 1_555 E DG 23 E O6 DG 2 1_555 hydrog WATSON-CRICK B DC 17 D O2 DC 17 1_555 E DG 23 E N2 DG 2 1_555 hydrog DC-DG PAIR B DC 18 D N3 DC 18 1_555 E DG 22 E N1 DG 1 1_555 TRANSCRIPTION transcription factor, homeobox, complex, hydroxymethylated DNA, TRANSCRIPTION A B K C A 1 A 39 0 B 1 B 39 0 K 189 K 250 0 C 189 C 250 0 7Q4N PDB 1 1 7Q4N 7Q4N PDB 2 1 7Q4N CDX2_HUMAN UNP 3 187 Q99626 DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQ 1 18 7Q4N 1 18 7Q4N A 1 1 18 22 39 7Q4N 22 39 7Q4N D 2 1 18 187 253 7Q4N 187 253 Q99626 K 3 1 67 1 18 7Q4N 1 18 7Q4N B 1 1 18 22 39 7Q4N 22 39 7Q4N E 2 1 18 187 253 7Q4N 187 253 Q99626 C 3 1 67 5 I 1 2 1