0.023691 0.000000 0.000000 0.000000 0.010541 0.000000 0.000000 0.000000 0.019851 0.00000 0.00000 0.00000 Bera, A.K. Kim, D. Woodbury, S. Kang, A. Baker, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90 90 90 42.21 94.865 50.375 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 S C N 149 N C N 150 N C N 151 N C N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N C N 196 N N N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C Y 218 N C Y 219 N C Y 220 N C Y 221 N C Y 222 N C Y 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C N 241 N C N 242 N C N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N O N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 R C N 272 N O N 273 N C N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C Y 289 N C Y 290 N C Y 291 N C Y 292 N N Y 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N O N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C N 340 N C N 341 N C N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing Y 214 N doub Y 215 N sing Y 216 N sing N 217 N sing Y 218 N doub N 219 N sing Y 220 N doub N 221 N sing Y 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing Y 283 N doub Y 284 N sing Y 285 N sing N 286 N sing Y 287 N doub Y 288 N sing Y 289 N sing N 290 N sing Y 291 N sing Y 292 N doub N 293 N sing Y 294 N doub N 295 N sing Y 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing Y 311 N doub Y 312 N sing Y 313 N sing N 314 N sing Y 315 N doub N 316 N sing Y 317 N doub N 318 N sing Y 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing UK Nature NATUAS 0006 1476-4687 649 246 253 10.1038/s41586-025-09746-w 41339547 Computational design of metallohydrolases. 2026 0000-0002-8097-3675 0000-0003-0510-8240 0000-0001-5487-0499 0000-0001-9473-2912 0009-0003-6387-9622 0000-0003-0575-7400 0000-0002-7557-7985 0000-0002-6610-2857 0000-0002-3941-621X 0000-0001-7896-6217 10.2210/pdb9pyj/pdb pdb_00009pyj 100 1 N PIXEL 2025-07-29 DECTRIS EIGER X 16M SINGLE WAVELENGTH M x-ray 1 0.97920 1.0 24-ID-E APS 0.97920 SYNCHROTRON APS BEAMLINE 24-ID-E 14385.199 ZETA_2 4 man polymer no no ELTPLQQAALKWARKLAERFPELGEEFIAVHLEEARFWEKAGATPEEVDAAGKATLEYYEAIRNGDEEKAVEARKKALDI YNKIVEALKKQPPEVVAAYEAFRPRHEALHRRAEATLRAQYEARGS ELTPLQQAALKWARKLAERFPELGEEFIAVHLEEARFWEKAGATPEEVDAAGKATLEYYEAIRNGDEEKAVEARKKALDI YNKIVEALKKQPPEVVAAYEAFRPRHEALHRRAEATLRAQYEARGS A,B,C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 126 32630 synthetic construct 562 Escherichia coli Biological sequence 1 VAPOR DIFFUSION, SITTING DROP 0.2M MgCl2, 0.1M Tris pH 8.5, 30% PEG4000 293 citation citation_author citation repository Initial release Database references Database references 1 0 2025-10-22 1 1 2025-12-17 1 2 2025-12-31 _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation.journal_volume _citation.page_first _citation.page_last _citation.year United States Howard Hughes Medical Institute (HHMI) dabaker@gmail.com 0000-0001-7896-6217 David Baker principal investigator/group leader N RCSB Y RCSB 2025-08-07 REL REL N de novo designed model Other in silico model n 1 1 A LEU 2 n 2 LEU 2 A THR 3 n 3 THR 3 A PRO 4 n 4 PRO 4 A LEU 5 n 5 LEU 5 A GLN 6 n 6 GLN 6 A GLN 7 n 7 GLN 7 A ALA 8 n 8 ALA 8 A ALA 9 n 9 ALA 9 A LEU 10 n 10 LEU 10 A LYS 11 n 11 LYS 11 A TRP 12 n 12 TRP 12 A ALA 13 n 13 ALA 13 A ARG 14 n 14 ARG 14 A LYS 15 n 15 LYS 15 A LEU 16 n 16 LEU 16 A ALA 17 n 17 ALA 17 A GLU 18 n 18 GLU 18 A ARG 19 n 19 ARG 19 A PHE 20 n 20 PHE 20 A PRO 21 n 21 PRO 21 A GLU 22 n 22 GLU 22 A LEU 23 n 23 LEU 23 A GLY 24 n 24 GLY 24 A GLU 25 n 25 GLU 25 A GLU 26 n 26 GLU 26 A PHE 27 n 27 PHE 27 A ILE 28 n 28 ILE 28 A ALA 29 n 29 ALA 29 A VAL 30 n 30 VAL 30 A HIS 31 n 31 HIS 31 A LEU 32 n 32 LEU 32 A GLU 33 n 33 GLU 33 A GLU 34 n 34 GLU 34 A ALA 35 n 35 ALA 35 A ARG 36 n 36 ARG 36 A PHE 37 n 37 PHE 37 A TRP 38 n 38 TRP 38 A GLU 39 n 39 GLU 39 A LYS 40 n 40 LYS 40 A ALA 41 n 41 ALA 41 A GLY 42 n 42 GLY 42 A ALA 43 n 43 ALA 43 A THR 44 n 44 THR 44 A PRO 45 n 45 PRO 45 A GLU 46 n 46 GLU 46 A GLU 47 n 47 GLU 47 A VAL 48 n 48 VAL 48 A ASP 49 n 49 ASP 49 A ALA 50 n 50 ALA 50 A ALA 51 n 51 ALA 51 A GLY 52 n 52 GLY 52 A LYS 53 n 53 LYS 53 A ALA 54 n 54 ALA 54 A THR 55 n 55 THR 55 A LEU 56 n 56 LEU 56 A GLU 57 n 57 GLU 57 A TYR 58 n 58 TYR 58 A TYR 59 n 59 TYR 59 A GLU 60 n 60 GLU 60 A ALA 61 n 61 ALA 61 A ILE 62 n 62 ILE 62 A ARG 63 n 63 ARG 63 A ASN 64 n 64 ASN 64 A GLY 65 n 65 GLY 65 A ASP 66 n 66 ASP 66 A GLU 67 n 67 GLU 67 A GLU 68 n 68 GLU 68 A LYS 69 n 69 LYS 69 A ALA 70 n 70 ALA 70 A VAL 71 n 71 VAL 71 A GLU 72 n 72 GLU 72 A ALA 73 n 73 ALA 73 A ARG 74 n 74 ARG 74 A LYS 75 n 75 LYS 75 A LYS 76 n 76 LYS 76 A ALA 77 n 77 ALA 77 A LEU 78 n 78 LEU 78 A ASP 79 n 79 ASP 79 A ILE 80 n 80 ILE 80 A TYR 81 n 81 TYR 81 A ASN 82 n 82 ASN 82 A LYS 83 n 83 LYS 83 A ILE 84 n 84 ILE 84 A VAL 85 n 85 VAL 85 A GLU 86 n 86 GLU 86 A ALA 87 n 87 ALA 87 A LEU 88 n 88 LEU 88 A LYS 89 n 89 LYS 89 A LYS 90 n 90 LYS 90 A GLN 91 n 91 GLN 91 A PRO 92 n 92 PRO 92 A PRO 93 n 93 PRO 93 A GLU 94 n 94 GLU 94 A VAL 95 n 95 VAL 95 A VAL 96 n 96 VAL 96 A ALA 97 n 97 ALA 97 A ALA 98 n 98 ALA 98 A TYR 99 n 99 TYR 99 A GLU 100 n 100 GLU 100 A ALA 101 n 101 ALA 101 A PHE 102 n 102 PHE 102 A ARG 103 n 103 ARG 103 A PRO 104 n 104 PRO 104 A ARG 105 n 105 ARG 105 A HIS 106 n 106 HIS 106 A GLU 107 n 107 GLU 107 A ALA 108 n 108 ALA 108 A LEU 109 n 109 LEU 109 A HIS 110 n 110 HIS 110 A ARG 111 n 111 ARG 111 A ARG 112 n 112 ARG 112 A ALA 113 n 113 ALA 113 A GLU 114 n 114 GLU 114 A ALA 115 n 115 ALA 115 A THR 116 n 116 THR 116 A LEU 117 n 117 LEU 117 A ARG 118 n 118 ARG 118 A ALA 119 n 119 ALA 119 A GLN 120 n 120 GLN 120 A TYR 121 n 121 TYR 121 A GLU 122 n 122 GLU 122 A ALA 123 n 123 ALA 123 A ARG 124 n 124 ARG 124 A n 125 125 A n 126 126 A n 1 1 B LEU 2 n 2 LEU 2 B THR 3 n 3 THR 3 B PRO 4 n 4 PRO 4 B LEU 5 n 5 LEU 5 B GLN 6 n 6 GLN 6 B GLN 7 n 7 GLN 7 B ALA 8 n 8 ALA 8 B ALA 9 n 9 ALA 9 B LEU 10 n 10 LEU 10 B LYS 11 n 11 LYS 11 B TRP 12 n 12 TRP 12 B ALA 13 n 13 ALA 13 B ARG 14 n 14 ARG 14 B LYS 15 n 15 LYS 15 B LEU 16 n 16 LEU 16 B ALA 17 n 17 ALA 17 B GLU 18 n 18 GLU 18 B ARG 19 n 19 ARG 19 B PHE 20 n 20 PHE 20 B PRO 21 n 21 PRO 21 B GLU 22 n 22 GLU 22 B LEU 23 n 23 LEU 23 B GLY 24 n 24 GLY 24 B GLU 25 n 25 GLU 25 B GLU 26 n 26 GLU 26 B PHE 27 n 27 PHE 27 B ILE 28 n 28 ILE 28 B ALA 29 n 29 ALA 29 B VAL 30 n 30 VAL 30 B HIS 31 n 31 HIS 31 B LEU 32 n 32 LEU 32 B GLU 33 n 33 GLU 33 B GLU 34 n 34 GLU 34 B ALA 35 n 35 ALA 35 B ARG 36 n 36 ARG 36 B PHE 37 n 37 PHE 37 B TRP 38 n 38 TRP 38 B GLU 39 n 39 GLU 39 B LYS 40 n 40 LYS 40 B ALA 41 n 41 ALA 41 B GLY 42 n 42 GLY 42 B ALA 43 n 43 ALA 43 B THR 44 n 44 THR 44 B PRO 45 n 45 PRO 45 B GLU 46 n 46 GLU 46 B GLU 47 n 47 GLU 47 B VAL 48 n 48 VAL 48 B ASP 49 n 49 ASP 49 B ALA 50 n 50 ALA 50 B ALA 51 n 51 ALA 51 B GLY 52 n 52 GLY 52 B LYS 53 n 53 LYS 53 B ALA 54 n 54 ALA 54 B THR 55 n 55 THR 55 B LEU 56 n 56 LEU 56 B GLU 57 n 57 GLU 57 B TYR 58 n 58 TYR 58 B TYR 59 n 59 TYR 59 B GLU 60 n 60 GLU 60 B ALA 61 n 61 ALA 61 B ILE 62 n 62 ILE 62 B ARG 63 n 63 ARG 63 B ASN 64 n 64 ASN 64 B GLY 65 n 65 GLY 65 B ASP 66 n 66 ASP 66 B GLU 67 n 67 GLU 67 B GLU 68 n 68 GLU 68 B LYS 69 n 69 LYS 69 B ALA 70 n 70 ALA 70 B VAL 71 n 71 VAL 71 B GLU 72 n 72 GLU 72 B ALA 73 n 73 ALA 73 B ARG 74 n 74 ARG 74 B LYS 75 n 75 LYS 75 B LYS 76 n 76 LYS 76 B ALA 77 n 77 ALA 77 B LEU 78 n 78 LEU 78 B ASP 79 n 79 ASP 79 B ILE 80 n 80 ILE 80 B TYR 81 n 81 TYR 81 B ASN 82 n 82 ASN 82 B LYS 83 n 83 LYS 83 B ILE 84 n 84 ILE 84 B VAL 85 n 85 VAL 85 B GLU 86 n 86 GLU 86 B ALA 87 n 87 ALA 87 B LEU 88 n 88 LEU 88 B LYS 89 n 89 LYS 89 B LYS 90 n 90 LYS 90 B GLN 91 n 91 GLN 91 B PRO 92 n 92 PRO 92 B PRO 93 n 93 PRO 93 B GLU 94 n 94 GLU 94 B VAL 95 n 95 VAL 95 B VAL 96 n 96 VAL 96 B ALA 97 n 97 ALA 97 B ALA 98 n 98 ALA 98 B TYR 99 n 99 TYR 99 B GLU 100 n 100 GLU 100 B ALA 101 n 101 ALA 101 B PHE 102 n 102 PHE 102 B ARG 103 n 103 ARG 103 B PRO 104 n 104 PRO 104 B ARG 105 n 105 ARG 105 B HIS 106 n 106 HIS 106 B GLU 107 n 107 GLU 107 B ALA 108 n 108 ALA 108 B LEU 109 n 109 LEU 109 B HIS 110 n 110 HIS 110 B ARG 111 n 111 ARG 111 B ARG 112 n 112 ARG 112 B ALA 113 n 113 ALA 113 B GLU 114 n 114 GLU 114 B ALA 115 n 115 ALA 115 B THR 116 n 116 THR 116 B LEU 117 n 117 LEU 117 B ARG 118 n 118 ARG 118 B ALA 119 n 119 ALA 119 B GLN 120 n 120 GLN 120 B TYR 121 n 121 TYR 121 B GLU 122 n 122 GLU 122 B ALA 123 n 123 ALA 123 B n 124 124 B n 125 125 B n 126 126 B n 1 1 C LEU 2 n 2 LEU 2 C THR 3 n 3 THR 3 C PRO 4 n 4 PRO 4 C LEU 5 n 5 LEU 5 C GLN 6 n 6 GLN 6 C GLN 7 n 7 GLN 7 C ALA 8 n 8 ALA 8 C ALA 9 n 9 ALA 9 C LEU 10 n 10 LEU 10 C LYS 11 n 11 LYS 11 C TRP 12 n 12 TRP 12 C ALA 13 n 13 ALA 13 C ARG 14 n 14 ARG 14 C LYS 15 n 15 LYS 15 C LEU 16 n 16 LEU 16 C ALA 17 n 17 ALA 17 C GLU 18 n 18 GLU 18 C ARG 19 n 19 ARG 19 C PHE 20 n 20 PHE 20 C PRO 21 n 21 PRO 21 C GLU 22 n 22 GLU 22 C LEU 23 n 23 LEU 23 C GLY 24 n 24 GLY 24 C GLU 25 n 25 GLU 25 C GLU 26 n 26 GLU 26 C PHE 27 n 27 PHE 27 C ILE 28 n 28 ILE 28 C ALA 29 n 29 ALA 29 C VAL 30 n 30 VAL 30 C HIS 31 n 31 HIS 31 C LEU 32 n 32 LEU 32 C GLU 33 n 33 GLU 33 C GLU 34 n 34 GLU 34 C ALA 35 n 35 ALA 35 C ARG 36 n 36 ARG 36 C PHE 37 n 37 PHE 37 C TRP 38 n 38 TRP 38 C GLU 39 n 39 GLU 39 C LYS 40 n 40 LYS 40 C ALA 41 n 41 ALA 41 C GLY 42 n 42 GLY 42 C ALA 43 n 43 ALA 43 C THR 44 n 44 THR 44 C PRO 45 n 45 PRO 45 C GLU 46 n 46 GLU 46 C GLU 47 n 47 GLU 47 C VAL 48 n 48 VAL 48 C ASP 49 n 49 ASP 49 C ALA 50 n 50 ALA 50 C ALA 51 n 51 ALA 51 C GLY 52 n 52 GLY 52 C LYS 53 n 53 LYS 53 C ALA 54 n 54 ALA 54 C THR 55 n 55 THR 55 C LEU 56 n 56 LEU 56 C GLU 57 n 57 GLU 57 C TYR 58 n 58 TYR 58 C TYR 59 n 59 TYR 59 C GLU 60 n 60 GLU 60 C ALA 61 n 61 ALA 61 C ILE 62 n 62 ILE 62 C ARG 63 n 63 ARG 63 C ASN 64 n 64 ASN 64 C GLY 65 n 65 GLY 65 C ASP 66 n 66 ASP 66 C GLU 67 n 67 GLU 67 C GLU 68 n 68 GLU 68 C LYS 69 n 69 LYS 69 C ALA 70 n 70 ALA 70 C VAL 71 n 71 VAL 71 C GLU 72 n 72 GLU 72 C ALA 73 n 73 ALA 73 C ARG 74 n 74 ARG 74 C LYS 75 n 75 LYS 75 C LYS 76 n 76 LYS 76 C ALA 77 n 77 ALA 77 C LEU 78 n 78 LEU 78 C ASP 79 n 79 ASP 79 C ILE 80 n 80 ILE 80 C TYR 81 n 81 TYR 81 C ASN 82 n 82 ASN 82 C LYS 83 n 83 LYS 83 C ILE 84 n 84 ILE 84 C VAL 85 n 85 VAL 85 C GLU 86 n 86 GLU 86 C ALA 87 n 87 ALA 87 C LEU 88 n 88 LEU 88 C LYS 89 n 89 LYS 89 C LYS 90 n 90 LYS 90 C GLN 91 n 91 GLN 91 C PRO 92 n 92 PRO 92 C PRO 93 n 93 PRO 93 C GLU 94 n 94 GLU 94 C VAL 95 n 95 VAL 95 C VAL 96 n 96 VAL 96 C ALA 97 n 97 ALA 97 C ALA 98 n 98 ALA 98 C TYR 99 n 99 TYR 99 C GLU 100 n 100 GLU 100 C ALA 101 n 101 ALA 101 C PHE 102 n 102 PHE 102 C ARG 103 n 103 ARG 103 C PRO 104 n 104 PRO 104 C ARG 105 n 105 ARG 105 C HIS 106 n 106 HIS 106 C GLU 107 n 107 GLU 107 C ALA 108 n 108 ALA 108 C LEU 109 n 109 LEU 109 C HIS 110 n 110 HIS 110 C ARG 111 n 111 ARG 111 C ARG 112 n 112 ARG 112 C ALA 113 n 113 ALA 113 C GLU 114 n 114 GLU 114 C ALA 115 n 115 ALA 115 C THR 116 n 116 THR 116 C LEU 117 n 117 LEU 117 C ARG 118 n 118 ARG 118 C ALA 119 n 119 ALA 119 C GLN 120 n 120 GLN 120 C TYR 121 n 121 TYR 121 C GLU 122 n 122 GLU 122 C ALA 123 n 123 ALA 123 C ARG 124 n 124 ARG 124 C n 125 125 C n 126 126 C n 1 1 D n 2 2 D THR 3 n 3 THR 3 D PRO 4 n 4 PRO 4 D LEU 5 n 5 LEU 5 D GLN 6 n 6 GLN 6 D GLN 7 n 7 GLN 7 D ALA 8 n 8 ALA 8 D ALA 9 n 9 ALA 9 D LEU 10 n 10 LEU 10 D LYS 11 n 11 LYS 11 D TRP 12 n 12 TRP 12 D ALA 13 n 13 ALA 13 D ARG 14 n 14 ARG 14 D LYS 15 n 15 LYS 15 D LEU 16 n 16 LEU 16 D ALA 17 n 17 ALA 17 D GLU 18 n 18 GLU 18 D ARG 19 n 19 ARG 19 D PHE 20 n 20 PHE 20 D PRO 21 n 21 PRO 21 D GLU 22 n 22 GLU 22 D LEU 23 n 23 LEU 23 D GLY 24 n 24 GLY 24 D GLU 25 n 25 GLU 25 D GLU 26 n 26 GLU 26 D PHE 27 n 27 PHE 27 D ILE 28 n 28 ILE 28 D ALA 29 n 29 ALA 29 D VAL 30 n 30 VAL 30 D HIS 31 n 31 HIS 31 D LEU 32 n 32 LEU 32 D GLU 33 n 33 GLU 33 D GLU 34 n 34 GLU 34 D ALA 35 n 35 ALA 35 D ARG 36 n 36 ARG 36 D PHE 37 n 37 PHE 37 D TRP 38 n 38 TRP 38 D GLU 39 n 39 GLU 39 D LYS 40 n 40 LYS 40 D ALA 41 n 41 ALA 41 D GLY 42 n 42 GLY 42 D ALA 43 n 43 ALA 43 D THR 44 n 44 THR 44 D PRO 45 n 45 PRO 45 D GLU 46 n 46 GLU 46 D GLU 47 n 47 GLU 47 D VAL 48 n 48 VAL 48 D ASP 49 n 49 ASP 49 D ALA 50 n 50 ALA 50 D ALA 51 n 51 ALA 51 D GLY 52 n 52 GLY 52 D LYS 53 n 53 LYS 53 D ALA 54 n 54 ALA 54 D THR 55 n 55 THR 55 D LEU 56 n 56 LEU 56 D GLU 57 n 57 GLU 57 D TYR 58 n 58 TYR 58 D TYR 59 n 59 TYR 59 D GLU 60 n 60 GLU 60 D ALA 61 n 61 ALA 61 D ILE 62 n 62 ILE 62 D ARG 63 n 63 ARG 63 D ASN 64 n 64 ASN 64 D GLY 65 n 65 GLY 65 D ASP 66 n 66 ASP 66 D GLU 67 n 67 GLU 67 D GLU 68 n 68 GLU 68 D LYS 69 n 69 LYS 69 D ALA 70 n 70 ALA 70 D VAL 71 n 71 VAL 71 D GLU 72 n 72 GLU 72 D ALA 73 n 73 ALA 73 D ARG 74 n 74 ARG 74 D LYS 75 n 75 LYS 75 D LYS 76 n 76 LYS 76 D ALA 77 n 77 ALA 77 D LEU 78 n 78 LEU 78 D ASP 79 n 79 ASP 79 D ILE 80 n 80 ILE 80 D TYR 81 n 81 TYR 81 D ASN 82 n 82 ASN 82 D LYS 83 n 83 LYS 83 D ILE 84 n 84 ILE 84 D VAL 85 n 85 VAL 85 D GLU 86 n 86 GLU 86 D ALA 87 n 87 ALA 87 D LEU 88 n 88 LEU 88 D LYS 89 n 89 LYS 89 D LYS 90 n 90 LYS 90 D GLN 91 n 91 GLN 91 D PRO 92 n 92 PRO 92 D PRO 93 n 93 PRO 93 D GLU 94 n 94 GLU 94 D VAL 95 n 95 VAL 95 D VAL 96 n 96 VAL 96 D ALA 97 n 97 ALA 97 D ALA 98 n 98 ALA 98 D TYR 99 n 99 TYR 99 D GLU 100 n 100 GLU 100 D ALA 101 n 101 ALA 101 D PHE 102 n 102 PHE 102 D ARG 103 n 103 ARG 103 D PRO 104 n 104 PRO 104 D ARG 105 n 105 ARG 105 D HIS 106 n 106 HIS 106 D GLU 107 n 107 GLU 107 D ALA 108 n 108 ALA 108 D LEU 109 n 109 LEU 109 D HIS 110 n 110 HIS 110 D ARG 111 n 111 ARG 111 D ARG 112 n 112 ARG 112 D ALA 113 n 113 ALA 113 D GLU 114 n 114 GLU 114 D ALA 115 n 115 ALA 115 D THR 116 n 116 THR 116 D LEU 117 n 117 LEU 117 D ARG 118 n 118 ARG 118 D ALA 119 n 119 ALA 119 D GLN 120 n 120 GLN 120 D TYR 121 n 121 TYR 121 D GLU 122 n 122 GLU 122 D n 123 123 D n 124 124 D n 125 125 D n 126 126 D author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric none 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLU 1 A GLU 1 1 Y 1 A GLY 125 A GLY 125 1 Y 1 A SER 126 A SER 126 1 Y 1 B GLU 1 B GLU 1 1 Y 1 B ARG 124 B ARG 124 1 Y 1 B GLY 125 B GLY 125 1 Y 1 B SER 126 B SER 126 1 Y 1 C GLU 1 C GLU 1 1 Y 1 C GLY 125 C GLY 125 1 Y 1 C SER 126 C SER 126 1 Y 1 D GLU 1 D GLU 1 1 Y 1 D LEU 2 D LEU 2 1 Y 1 D ALA 123 D ALA 123 1 Y 1 D ARG 124 D ARG 124 1 Y 1 D GLY 125 D GLY 125 1 Y 1 D SER 126 D SER 126 1 Y 1 C C O HG1 ALA THR 43 44 1.50 1 B C HH22 OE1 ARG GLU 14 60 1.50 1_555 2_556 1 A GLU 25 -87.20 -87.03 1 A LYS 40 -75.16 36.96 1 A ALA 41 -160.34 45.06 1 A ILE 80 -123.49 -53.08 1 A PRO 93 -65.68 18.38 1 A GLU 122 -75.08 48.00 1 A ALA 123 -161.47 81.61 1 B LEU 10 5.55 -88.46 1 B LYS 11 -22.00 -64.94 1 B PRO 21 -79.33 32.33 1 B GLU 39 -71.71 24.90 1 B ALA 41 -152.45 59.73 1 B ARG 63 140.64 -23.55 1 B ASP 66 47.82 76.86 1 B LYS 83 -161.84 -49.76 1 B ALA 113 -84.24 -73.45 1 C PRO 21 -72.78 -132.80 1 C LEU 23 44.24 19.69 1 C ALA 43 75.20 -40.06 1 C THR 44 76.14 124.66 1 C PRO 92 -114.02 53.89 1 C GLU 94 76.15 -12.47 1 D LEU 23 -100.24 -81.20 1 D PHE 27 -44.53 -72.28 1 D TYR 58 -64.01 -73.82 1 D ARG 74 -81.03 48.01 1 D LYS 75 -141.23 -59.59 1 D ARG 103 -19.33 -59.05 1 D PRO 104 -27.12 -47.46 85.782 -6.691 -0.000 0.432 -1.360 0.000 8.051 0.927 0.890 Hydrogens have been added in their riding positions 0.2829 0.2254 0.228 3.490 50.426 192 4863 5055 3.798 98.866 91.239 1.241 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.905 0.800 0.800 1.200 MASK BULK SOLVENT 3.490 50.426 0 3953 0 0 3953 0.003 0.012 4037 0.002 0.016 3886 1.111 1.891 5450 0.427 1.795 8936 5.563 5.000 484 5.321 5.000 42 18.124 10.000 712 12.505 10.000 214 0.054 0.200 571 0.004 0.020 4858 0.002 0.020 950 0.259 0.200 1294 0.211 0.200 4215 0.190 0.200 1971 0.072 0.200 2172 0.146 0.200 181 0.007 0.200 3 0.201 0.200 47 0.230 0.200 197 0.244 0.200 13 0.117 0.200 1 0.359 0.359 3.580 0 379 380 0.889 20 99.7368 0.357 0.369 0.369 3.678 0 357 359 0.888 20 99.4429 0.366 0.331 0.331 3.784 0 356 358 0.912 20 99.4413 0.330 0.381 0.293 0.298 3.900 22 334 358 0.888 0.926 20 99.4413 0.287 0.338 0.294 0.298 4.027 23 289 319 0.923 0.931 20 97.8056 0.290 0.441 0.258 0.269 4.167 18 307 331 0.833 0.947 20 98.1873 0.257 0.349 0.224 0.227 4.323 9 268 295 0.921 0.960 20 93.8983 0.224 0.339 0.199 0.204 4.498 13 296 309 0.919 0.963 20 100.0000 0.209 0.203 0.214 0.214 4.697 19 285 304 0.956 0.964 20 100.0000 0.221 0.881 0.204 0.207 4.924 2 260 262 0.909 0.970 20 100.0000 0.214 0.286 0.216 0.221 5.187 21 248 269 0.943 0.966 20 100.0000 0.232 0.428 0.222 0.233 5.499 13 230 246 0.872 0.965 20 98.7805 0.229 0.450 0.240 0.248 5.873 10 219 229 0.929 0.962 20 100.0000 0.250 0.288 0.217 0.220 6.337 9 205 217 0.901 0.970 20 98.6175 0.223 0.189 0.181 0.182 6.930 11 196 207 0.978 0.979 20 100.0000 0.193 0.316 0.154 0.160 7.730 6 171 179 0.925 0.985 20 98.8827 0.171 0.106 0.121 0.121 8.891 4 148 163 0.997 0.991 20 93.2515 0.137 0.083 0.128 0.125 10.806 7 145 152 0.998 0.990 20 100.0000 0.154 0.134 0.150 0.149 14.943 5 99 104 0.983 0.984 20 100.0000 0.189 0.374 0.374 50.426 0 71 72 0.895 20 98.6111 0.420 3.49 94.86 9PYJ 5069 0.963 0.335 0.155 0.405 0.75 1 3.2 6.7 99.0 0.934 3.49 3.82 1.8 1222 0.613 0.442 0.89 1 6.7 refinement REFMAC 5.8.0430 (refmacat 0.4.82) data scaling Aimless data reduction XDS phasing PHASER data extraction PDB_EXTRACT N Crystal Structure of ZETA_2-Apo 1 N N 1 N N 1 N N 1 N N A THR 3 A THR 3 HELX_P A ARG 19 A ARG 19 1 AA1 17 A PHE 20 A PHE 20 HELX_P A GLY 24 A GLY 24 5 AA2 5 A GLU 25 A GLU 25 HELX_P A LYS 40 A LYS 40 1 AA3 16 A THR 44 A THR 44 HELX_P A GLY 65 A GLY 65 1 AA4 22 A ASP 66 A ASP 66 HELX_P A ALA 77 A ALA 77 1 AA5 12 A ALA 77 A ALA 77 HELX_P A LYS 90 A LYS 90 1 AA6 14 A VAL 95 A VAL 95 HELX_P A GLU 122 A GLU 122 1 AA7 28 B LEU 5 B LEU 5 HELX_P B LEU 10 B LEU 10 1 AA8 6 B LEU 10 B LEU 10 HELX_P B PHE 20 B PHE 20 1 AA9 11 B GLY 24 B GLY 24 HELX_P B GLU 39 B GLU 39 1 AB1 16 B THR 44 B THR 44 HELX_P B GLU 60 B GLU 60 1 AB2 17 B ASP 66 B ASP 66 HELX_P B LYS 89 B LYS 89 1 AB3 24 B VAL 95 B VAL 95 HELX_P B ALA 123 B ALA 123 1 AB4 29 C THR 3 C THR 3 HELX_P C ARG 19 C ARG 19 1 AB5 17 C GLU 25 C GLU 25 HELX_P C GLU 39 C GLU 39 1 AB6 15 C LYS 40 C LYS 40 HELX_P C GLY 42 C GLY 42 5 AB7 3 C PRO 45 C PRO 45 HELX_P C GLY 65 C GLY 65 1 AB8 21 C ASP 66 C ASP 66 HELX_P C LYS 90 C LYS 90 1 AB9 25 C VAL 95 C VAL 95 HELX_P C GLU 122 C GLU 122 1 AC1 28 D PRO 4 D PRO 4 HELX_P D PHE 20 D PHE 20 1 AC2 17 D GLY 24 D GLY 24 HELX_P D ALA 41 D ALA 41 1 AC3 18 D THR 44 D THR 44 HELX_P D ASN 64 D ASN 64 1 AC4 21 D ASP 66 D ASP 66 HELX_P D LYS 89 D LYS 89 1 AC5 24 D PRO 92 D PRO 92 HELX_P D ARG 103 D ARG 103 1 AC6 12 D ARG 103 D ARG 103 HELX_P D GLN 120 D GLN 120 1 AC7 18 DE NOVO PROTEIN de novo protein, enzyme design, RFdiffusion2, zinc metallohydrolases 9PYJ PDB 1 1 9PYJ 1 126 9PYJ 1 126 9PYJ A 1 1 126 1 126 9PYJ 1 126 9PYJ B 1 1 126 1 126 9PYJ 1 126 9PYJ C 1 1 126 1 126 9PYJ 1 126 9PYJ D 1 1 126 4 P 1 21 1