0.040604 0.000000 0.019468 0.000000 0.021655 0.000000 0.000000 0.000000 0.039160 0.00000 0.00000 0.00000 2.51340 1.74867 1.72398 31.80534 0.44561 10.58317 0.0 3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0.53795 0.34799 0.11320 10.08003 29.74760 2.57510 0.0 3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 8.66788 8.58341 1.68052 12.31593 0.56275 110.00227 0.0 3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 2.99955 2.25584 1.72788 23.27268 7.45433 0.31622 0.0 3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 6.63511 3.01293 1.30238 5.54423 0.54580 90.85902 0.0 3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 3.21184 3.04156 1.73156 18.83700 5.90590 0.24126 0.0 3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 5.27941 5.27355 4.40635 36.77753 2.58877 0.47041 0.0 3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0009-0005-1724-9544 Hendrickson, A.D. 0000-0002-5248-142X Xing, E.R. 0000-0003-3946-0939 Yatsunyk, L.A. 0000-0003-3043-8401 Mergny, J.L. 0009-0006-2247-6458 Chen, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 115.616 90.000 24.628 46.178 28.320 29041.917 C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer Na 1 22.990 SODIUM ION non-polymer C8 H18 O5 194.226 TETRAETHYLENE GLYCOL non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C N 17 N C N 18 N O N 19 N N N 20 N C N 21 N N N 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 N C N 49 R C N 50 N N N 51 N C N 52 N O N 53 N N N 54 N C N 55 N O N 56 N C N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N H N 76 N H N 77 N K N 78 N NA N 79 N O N 80 N C N 81 N C N 82 N O N 83 N C N 84 N C N 85 N O N 86 N C N 87 N C N 88 N O N 89 N C N 90 N C N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing N 29 N sing Y 30 N doub N 31 N doub N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N doub N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N doub N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing To Be Published 0353 SubG4s: A Novel Class of Bulge-Rich G-Quadruplexes 0009-0005-1724-9544 0000-0002-5248-142X 0009-0006-2247-6458 0000-0003-3946-0939 0000-0003-3043-8401 10.2210/pdb9plb/pdb pdb_00009plb 196 Liquid nitrogen 1 N PIXEL 2025-06-17 DECTRIS EIGER X 16M SINGLE WAVELENGTH M x-ray 1 0.688790 1.0 17-ID-2 NSLS-II 0.688790 SYNCHROTRON NSLS-II BEAMLINE 17-ID-2 4109.652 DNA (13-MER) 2 syn polymer 194.226 TETRAETHYLENE GLYCOL 1 syn non-polymer 39.098 POTASSIUM ION 3 syn non-polymer 22.990 SODIUM ION 2 syn non-polymer 18.015 water 132 nat water no no (DG)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DG) GTGGTGTGTGGTG A,B polydeoxyribonucleotide n n n n n n n n n n n n n 1 1.80 29.5 Flat parallelograms VAPOR DIFFUSION, HANGING DROP 6.5 0.08 M Calcium chloride, 0.04 M Sodium Cacodylate 6.5, 0.012 M Spermine tetrahydrochloride, 37% w/v MPD 285 -5.982 3 6 A 10 A 13 -90.434 A_DG10:DG13_A 1 -3.537 1.701 0.157 3.354 -0.755 3 6 A 11 A 8 90.826 A_DG11:DG8_A 2 -3.915 -1.421 0.113 -3.581 -0.285 3 6 A 1 A 4 -90.659 A_DG1:DG4_A 3 4.246 1.453 -0.070 3.564 -0.412 3 6 B 10 B 13 -92.008 B_DG10:DG13_B 4 -9.608 1.709 0.326 3.287 0.594 3 6 B 11 B 8 90.890 B_DG11:DG8_B 5 -5.988 -1.470 0.079 -3.541 -0.461 3 6 B 1 B 4 -91.505 B_DG1:DG4_B 6 4.579 1.452 -0.047 3.569 -3.375 -65.519 A A 10 11 -1.110 A A 13 8 -3.333 1.201 0.564 1.903 AA_DG10DG11:DG8DG13_AA 1 1.511 1.396 -65.494 -1.708 0.457 0.006 -179.691 A A 11 1 0.670 A A 8 4 0.006 -1.339 1.514 3.575 AA_DG11DG1:DG4DG8_AA 2 -6.415 -3.208 -179.690 -1.788 0.757 -3.389 -67.133 B B 10 11 -1.550 B B 13 8 -3.314 1.712 0.616 1.975 BB_DG10DG11:DG8DG13_BB 3 4.655 4.213 -66.971 -1.718 0.371 -0.011 179.730 B B 11 1 1.582 B B 8 4 -0.010 3.163 -1.507 -3.564 BB_DG11DG1:DG4DG8_BB 4 4.705 -2.353 179.730 -1.782 0.754 repository Initial release 1 0 2026-07-22 United States National Institutes of Health/National Cancer Institute (NIH/NCI) 1R15CA253134 lyatsun1@swarthmore.edu 0000-0003-3946-0939 Liliya Yatsunyk principal investigator/group leader N RCSB Y RCSB 2025-07-15 REL REL PG4 TETRAETHYLENE GLYCOL K POTASSIUM ION NA SODIUM ION HOH water 32630 synthetic construct sample 1 13 N N 6FQ2 Intermolecular left-handed G-quadruplex PDB experimental model PG4 101 2 PG4 PG4 101 A K 1 3 K K 102 A K 2 3 K K 103 A NA 1 4 NA NA 104 A K 3 3 K K 101 B NA 2 4 NA NA 102 B HOH 2 5 HOH HOH 201 A HOH 39 5 HOH HOH 202 A HOH 100 5 HOH HOH 203 A HOH 104 5 HOH HOH 204 A HOH 61 5 HOH HOH 205 A HOH 69 5 HOH HOH 206 A HOH 102 5 HOH HOH 207 A HOH 6 5 HOH HOH 208 A HOH 23 5 HOH HOH 209 A HOH 97 5 HOH HOH 210 A HOH 86 5 HOH HOH 211 A HOH 5 5 HOH HOH 212 A HOH 66 5 HOH HOH 213 A HOH 73 5 HOH HOH 214 A HOH 17 5 HOH HOH 215 A HOH 48 5 HOH HOH 216 A HOH 35 5 HOH HOH 217 A HOH 55 5 HOH HOH 218 A HOH 51 5 HOH HOH 219 A HOH 56 5 HOH HOH 220 A HOH 65 5 HOH HOH 221 A HOH 24 5 HOH HOH 222 A HOH 64 5 HOH HOH 223 A HOH 101 5 HOH HOH 224 A HOH 62 5 HOH HOH 225 A HOH 42 5 HOH HOH 226 A HOH 89 5 HOH HOH 227 A HOH 127 5 HOH HOH 228 A HOH 60 5 HOH HOH 229 A HOH 49 5 HOH HOH 230 A HOH 41 5 HOH HOH 231 A HOH 133 5 HOH HOH 232 A HOH 78 5 HOH HOH 233 A HOH 93 5 HOH HOH 234 A HOH 4 5 HOH HOH 235 A HOH 30 5 HOH HOH 236 A HOH 52 5 HOH HOH 237 A HOH 63 5 HOH HOH 238 A HOH 120 5 HOH HOH 239 A HOH 32 5 HOH HOH 240 A HOH 84 5 HOH HOH 241 A HOH 58 5 HOH HOH 242 A HOH 76 5 HOH HOH 243 A HOH 36 5 HOH HOH 244 A HOH 28 5 HOH HOH 245 A HOH 18 5 HOH HOH 246 A HOH 107 5 HOH HOH 247 A HOH 20 5 HOH HOH 248 A HOH 3 5 HOH HOH 249 A HOH 119 5 HOH HOH 250 A HOH 27 5 HOH HOH 251 A HOH 110 5 HOH HOH 252 A HOH 112 5 HOH HOH 253 A HOH 80 5 HOH HOH 254 A HOH 79 5 HOH HOH 255 A HOH 50 5 HOH HOH 256 A HOH 70 5 HOH HOH 257 A HOH 103 5 HOH HOH 258 A HOH 130 5 HOH HOH 259 A HOH 126 5 HOH HOH 260 A HOH 91 5 HOH HOH 261 A HOH 94 5 HOH HOH 262 A HOH 129 5 HOH HOH 263 A HOH 53 5 HOH HOH 264 A HOH 99 5 HOH HOH 265 A HOH 105 5 HOH HOH 266 A HOH 22 5 HOH HOH 267 A HOH 9 5 HOH HOH 268 A HOH 122 5 HOH HOH 269 A HOH 71 5 HOH HOH 201 B HOH 38 5 HOH HOH 202 B HOH 43 5 HOH HOH 203 B HOH 95 5 HOH HOH 204 B HOH 82 5 HOH HOH 205 B HOH 21 5 HOH HOH 206 B HOH 81 5 HOH HOH 207 B HOH 44 5 HOH HOH 208 B HOH 90 5 HOH HOH 209 B HOH 34 5 HOH HOH 210 B HOH 11 5 HOH HOH 211 B HOH 33 5 HOH HOH 212 B HOH 40 5 HOH HOH 213 B HOH 45 5 HOH HOH 214 B HOH 31 5 HOH HOH 215 B HOH 8 5 HOH HOH 216 B HOH 125 5 HOH HOH 217 B HOH 19 5 HOH HOH 218 B HOH 12 5 HOH HOH 219 B HOH 59 5 HOH HOH 220 B HOH 15 5 HOH HOH 221 B HOH 74 5 HOH HOH 222 B HOH 54 5 HOH HOH 223 B HOH 113 5 HOH HOH 224 B HOH 1 5 HOH HOH 225 B HOH 7 5 HOH HOH 226 B HOH 47 5 HOH HOH 227 B HOH 16 5 HOH HOH 228 B HOH 37 5 HOH HOH 229 B HOH 124 5 HOH HOH 230 B HOH 72 5 HOH HOH 231 B HOH 83 5 HOH HOH 232 B HOH 46 5 HOH HOH 233 B HOH 25 5 HOH HOH 234 B HOH 77 5 HOH HOH 235 B HOH 26 5 HOH HOH 236 B HOH 29 5 HOH HOH 237 B HOH 96 5 HOH HOH 238 B HOH 88 5 HOH HOH 239 B HOH 10 5 HOH HOH 240 B HOH 131 5 HOH HOH 241 B HOH 68 5 HOH HOH 242 B HOH 114 5 HOH HOH 243 B HOH 121 5 HOH HOH 244 B HOH 87 5 HOH HOH 245 B HOH 13 5 HOH HOH 246 B HOH 92 5 HOH HOH 247 B HOH 118 5 HOH HOH 248 B HOH 14 5 HOH HOH 249 B HOH 116 5 HOH HOH 250 B HOH 128 5 HOH HOH 251 B HOH 85 5 HOH HOH 252 B HOH 111 5 HOH HOH 253 B HOH 98 5 HOH HOH 254 B HOH 57 5 HOH HOH 255 B HOH 117 5 HOH HOH 256 B HOH 115 5 HOH HOH 257 B HOH 108 5 HOH HOH 258 B HOH 67 5 HOH HOH 259 B HOH 123 5 HOH HOH 260 B HOH 109 5 HOH HOH 261 B HOH 132 5 HOH HOH 262 B HOH 106 5 HOH HOH 263 B DG 1 n 1 DG 1 A DT 2 n 2 DT 2 A DG 3 n 3 DG 3 A DG 4 n 4 DG 4 A DT 5 n 5 DT 5 A DG 6 n 6 DG 6 A DT 7 n 7 DT 7 A DG 8 n 8 DG 8 A DT 9 n 9 DT 9 A DG 10 n 10 DG 10 A DG 11 n 11 DG 11 A DT 12 n 12 DT 12 A DG 13 n 13 DG 13 A DG 1 n 1 DG 1 B DT 2 n 2 DT 2 B DG 3 n 3 DG 3 B DG 4 n 4 DG 4 B DT 5 n 5 DT 5 B DG 6 n 6 DG 6 B DT 7 n 7 DT 7 B DG 8 n 8 DG 8 B DT 9 n 9 DT 9 B DG 10 n 10 DG 10 B DG 11 n 11 DG 11 B DT 12 n 12 DT 12 B DG 13 n 13 DG 13 B author_defined_assembly 2 dimeric none A DG 1 A O6 DG 1 1_555 A K 102 D K K 1_555 A DG 3 A O6 DG 3 1_555 93.0 A DG 1 A O6 DG 1 1_555 A K 102 D K K 1_555 A DG 4 A O6 DG 4 1_555 65.8 A DG 3 A O6 DG 3 1_555 A K 102 D K K 1_555 A DG 4 A O6 DG 4 1_555 78.6 A DG 1 A O6 DG 1 1_555 A K 102 D K K 1_555 A DG 6 A O6 DG 6 1_555 153.9 A DG 3 A O6 DG 3 1_555 A K 102 D K K 1_555 A DG 6 A O6 DG 6 1_555 74.3 A DG 4 A O6 DG 4 1_555 A K 102 D K K 1_555 A DG 6 A O6 DG 6 1_555 89.0 A DG 1 A O6 DG 1 1_555 A K 102 D K K 1_555 A DG 8 A O6 DG 8 1_555 102.3 A DG 3 A O6 DG 3 1_555 A K 102 D K K 1_555 A DG 8 A O6 DG 8 1_555 132.1 A DG 4 A O6 DG 4 1_555 A K 102 D K K 1_555 A DG 8 A O6 DG 8 1_555 67.5 A DG 6 A O6 DG 6 1_555 A K 102 D K K 1_555 A DG 8 A O6 DG 8 1_555 72.3 A DG 1 A O6 DG 1 1_555 A K 102 D K K 1_555 A DG 10 A O6 DG 10 1_555 133.0 A DG 3 A O6 DG 3 1_555 A K 102 D K K 1_555 A DG 10 A O6 DG 10 1_555 108.5 A DG 4 A O6 DG 4 1_555 A K 102 D K K 1_555 A DG 10 A O6 DG 10 1_555 157.4 A DG 6 A O6 DG 6 1_555 A K 102 D K K 1_555 A DG 10 A O6 DG 10 1_555 73.0 A DG 8 A O6 DG 8 1_555 A K 102 D K K 1_555 A DG 10 A O6 DG 10 1_555 93.5 A DG 1 A O6 DG 1 1_555 A K 102 D K K 1_555 A DG 11 A O6 DG 11 1_555 67.6 A DG 3 A O6 DG 3 1_555 A K 102 D K K 1_555 A DG 11 A O6 DG 11 1_555 157.2 A DG 4 A O6 DG 4 1_555 A K 102 D K K 1_555 A DG 11 A O6 DG 11 1_555 102.5 A DG 6 A O6 DG 6 1_555 A K 102 D K K 1_555 A DG 11 A O6 DG 11 1_555 128.3 A DG 8 A O6 DG 8 1_555 A K 102 D K K 1_555 A DG 11 A O6 DG 11 1_555 66.7 A DG 10 A O6 DG 10 1_555 A K 102 D K K 1_555 A DG 11 A O6 DG 11 1_555 79.3 A DG 1 A O6 DG 1 1_555 A K 102 D K K 1_555 A DG 13 A O6 DG 13 1_555 76.0 A DG 3 A O6 DG 3 1_555 A K 102 D K K 1_555 A DG 13 A O6 DG 13 1_555 72.3 A DG 4 A O6 DG 4 1_555 A K 102 D K K 1_555 A DG 13 A O6 DG 13 1_555 130.1 A DG 6 A O6 DG 6 1_555 A K 102 D K K 1_555 A DG 13 A O6 DG 13 1_555 119.6 A DG 8 A O6 DG 8 1_555 A K 102 D K K 1_555 A DG 13 A O6 DG 13 1_555 155.4 A DG 10 A O6 DG 10 1_555 A K 102 D K K 1_555 A DG 13 A O6 DG 13 1_555 72.0 A DG 11 A O6 DG 11 1_555 A K 102 D K K 1_555 A DG 13 A O6 DG 13 1_555 90.7 A DG 1 A O6 DG 1 1_555 A K 103 E K K 1_555 A DG 4 A O6 DG 4 1_555 66.7 A DG 1 A O6 DG 1 1_555 A K 103 E K K 1_555 A DG 8 A O6 DG 8 1_555 103.7 A DG 4 A O6 DG 4 1_555 A K 103 E K K 1_555 A DG 8 A O6 DG 8 1_555 67.9 A DG 1 A O6 DG 1 1_555 A K 103 E K K 1_555 A DG 11 A O6 DG 11 1_555 68.5 A DG 4 A O6 DG 4 1_555 A K 103 E K K 1_555 A DG 11 A O6 DG 11 1_555 103.6 A DG 8 A O6 DG 8 1_555 A K 103 E K K 1_555 A DG 11 A O6 DG 11 1_555 67.1 A DG 1 A O6 DG 1 1_555 A K 103 E K K 1_555 B DG 1 B O6 DG 1 1_555 137.2 A DG 4 A O6 DG 4 1_555 A K 103 E K K 1_555 B DG 1 B O6 DG 1 1_555 83.4 A DG 8 A O6 DG 8 1_555 A K 103 E K K 1_555 B DG 1 B O6 DG 1 1_555 91.5 A DG 11 A O6 DG 11 1_555 A K 103 E K K 1_555 B DG 1 B O6 DG 1 1_555 151.9 A DG 1 A O6 DG 1 1_555 A K 103 E K K 1_555 B DG 4 B O6 DG 4 1_555 82.8 A DG 4 A O6 DG 4 1_555 A K 103 E K K 1_555 B DG 4 B O6 DG 4 1_555 91.1 A DG 8 A O6 DG 8 1_555 A K 103 E K K 1_555 B DG 4 B O6 DG 4 1_555 152.3 A DG 11 A O6 DG 11 1_555 A K 103 E K K 1_555 B DG 4 B O6 DG 4 1_555 138.3 B DG 1 B O6 DG 1 1_555 A K 103 E K K 1_555 B DG 4 B O6 DG 4 1_555 67.3 A DG 1 A O6 DG 1 1_555 A K 103 E K K 1_555 B DG 8 B O6 DG 8 1_555 92.0 A DG 4 A O6 DG 4 1_555 A K 103 E K K 1_555 B DG 8 B O6 DG 8 1_555 152.1 A DG 8 A O6 DG 8 1_555 A K 103 E K K 1_555 B DG 8 B O6 DG 8 1_555 137.6 A DG 11 A O6 DG 11 1_555 A K 103 E K K 1_555 B DG 8 B O6 DG 8 1_555 83.3 B DG 1 B O6 DG 1 1_555 A K 103 E K K 1_555 B DG 8 B O6 DG 8 1_555 103.3 B DG 4 B O6 DG 4 1_555 A K 103 E K K 1_555 B DG 8 B O6 DG 8 1_555 67.7 A DG 1 A O6 DG 1 1_555 A K 103 E K K 1_555 B DG 11 B O6 DG 11 1_555 152.1 A DG 4 A O6 DG 4 1_555 A K 103 E K K 1_555 B DG 11 B O6 DG 11 1_555 139.2 A DG 8 A O6 DG 8 1_555 A K 103 E K K 1_555 B DG 11 B O6 DG 11 1_555 83.8 A DG 11 A O6 DG 11 1_555 A K 103 E K K 1_555 B DG 11 B O6 DG 11 1_555 90.8 B DG 1 B O6 DG 1 1_555 A K 103 E K K 1_555 B DG 11 B O6 DG 11 1_555 68.0 B DG 4 B O6 DG 4 1_555 A K 103 E K K 1_555 B DG 11 B O6 DG 11 1_555 103.2 B DG 8 B O6 DG 8 1_555 A K 103 E K K 1_555 B DG 11 B O6 DG 11 1_555 66.3 A DG 3 A OP1 DG 3 1_555 A NA 104 F NA NA 1_555 A DG 11 A OP1 DG 11 1_555 13.6 A DG 3 A OP1 DG 3 1_555 A NA 104 F NA NA 1_555 A HOH 234 I O HOH 1_556 87.8 A DG 11 A OP1 DG 11 1_555 A NA 104 F NA NA 1_555 A HOH 234 I O HOH 1_556 101.3 A DG 3 A OP1 DG 3 1_555 A NA 104 F NA NA 1_555 A HOH 252 I O HOH 1_555 85.6 A DG 11 A OP1 DG 11 1_555 A NA 104 F NA NA 1_555 A HOH 252 I O HOH 1_555 72.8 A HOH 234 I O HOH 1_556 A NA 104 F NA NA 1_555 A HOH 252 I O HOH 1_555 152.8 A DG 3 A OP1 DG 3 1_555 A NA 104 F NA NA 1_555 A HOH 253 I O HOH 1_556 89.8 A DG 11 A OP1 DG 11 1_555 A NA 104 F NA NA 1_555 A HOH 253 I O HOH 1_556 85.5 A HOH 234 I O HOH 1_556 A NA 104 F NA NA 1_555 A HOH 253 I O HOH 1_556 115.6 A HOH 252 I O HOH 1_555 A NA 104 F NA NA 1_555 A HOH 253 I O HOH 1_556 90.7 A DG 3 A OP1 DG 3 1_555 A NA 104 F NA NA 1_555 A HOH 255 I O HOH 1_555 84.3 A DG 11 A OP1 DG 11 1_555 A NA 104 F NA NA 1_555 A HOH 255 I O HOH 1_555 93.6 A HOH 234 I O HOH 1_556 A NA 104 F NA NA 1_555 A HOH 255 I O HOH 1_555 54.0 A HOH 252 I O HOH 1_555 A NA 104 F NA NA 1_555 A HOH 255 I O HOH 1_555 150.6 A HOH 253 I O HOH 1_556 A NA 104 F NA NA 1_555 A HOH 255 I O HOH 1_555 61.8 A DG 3 A OP1 DG 3 1_555 A NA 104 F NA NA 1_555 A HOH 260 I O HOH 1_556 95.5 A DG 11 A OP1 DG 11 1_555 A NA 104 F NA NA 1_555 A HOH 260 I O HOH 1_556 99.3 A HOH 234 I O HOH 1_556 A NA 104 F NA NA 1_555 A HOH 260 I O HOH 1_556 66.8 A HOH 252 I O HOH 1_555 A NA 104 F NA NA 1_555 A HOH 260 I O HOH 1_556 87.6 A HOH 253 I O HOH 1_556 A NA 104 F NA NA 1_555 A HOH 260 I O HOH 1_556 174.2 A HOH 255 I O HOH 1_555 A NA 104 F NA NA 1_555 A HOH 260 I O HOH 1_556 120.8 B DG 1 B O6 DG 1 1_555 B K 101 G K K 1_555 B DG 3 B O6 DG 3 1_555 95.0 B DG 1 B O6 DG 1 1_555 B K 101 G K K 1_555 B DG 4 B O6 DG 4 1_555 66.4 B DG 3 B O6 DG 3 1_555 B K 101 G K K 1_555 B DG 4 B O6 DG 4 1_555 79.7 B DG 1 B O6 DG 1 1_555 B K 101 G K K 1_555 B DG 6 B O6 DG 6 1_555 155.3 B DG 3 B O6 DG 3 1_555 B K 101 G K K 1_555 B DG 6 B O6 DG 6 1_555 74.1 B DG 4 B O6 DG 4 1_555 B K 101 G K K 1_555 B DG 6 B O6 DG 6 1_555 89.5 B DG 1 B O6 DG 1 1_555 B K 101 G K K 1_555 B DG 8 B O6 DG 8 1_555 102.2 B DG 3 B O6 DG 3 1_555 B K 101 G K K 1_555 B DG 8 B O6 DG 8 1_555 131.9 B DG 4 B O6 DG 4 1_555 B K 101 G K K 1_555 B DG 8 B O6 DG 8 1_555 67.3 B DG 6 B O6 DG 6 1_555 B K 101 G K K 1_555 B DG 8 B O6 DG 8 1_555 71.7 B DG 1 B O6 DG 1 1_555 B K 101 G K K 1_555 B DG 10 B O6 DG 10 1_555 132.6 B DG 3 B O6 DG 3 1_555 B K 101 G K K 1_555 B DG 10 B O6 DG 10 1_555 104.1 B DG 4 B O6 DG 4 1_555 B K 101 G K K 1_555 B DG 10 B O6 DG 10 1_555 159.0 B DG 6 B O6 DG 6 1_555 B K 101 G K K 1_555 B DG 10 B O6 DG 10 1_555 72.2 B DG 8 B O6 DG 8 1_555 B K 101 G K K 1_555 B DG 10 B O6 DG 10 1_555 96.4 B DG 1 B O6 DG 1 1_555 B K 101 G K K 1_555 B DG 11 B O6 DG 11 1_555 68.1 B DG 3 B O6 DG 3 1_555 B K 101 G K K 1_555 B DG 11 B O6 DG 11 1_555 158.6 B DG 4 B O6 DG 4 1_555 B K 101 G K K 1_555 B DG 11 B O6 DG 11 1_555 103.8 B DG 6 B O6 DG 6 1_555 B K 101 G K K 1_555 B DG 11 B O6 DG 11 1_555 126.6 B DG 8 B O6 DG 8 1_555 B K 101 G K K 1_555 B DG 11 B O6 DG 11 1_555 66.9 B DG 10 B O6 DG 10 1_555 B K 101 G K K 1_555 B DG 11 B O6 DG 11 1_555 80.3 B DG 1 B O6 DG 1 1_555 B K 101 G K K 1_555 B DG 13 B O6 DG 13 1_555 72.7 B DG 3 B O6 DG 3 1_555 B K 101 G K K 1_555 B DG 13 B O6 DG 13 1_555 72.4 B DG 4 B O6 DG 4 1_555 B K 101 G K K 1_555 B DG 13 B O6 DG 13 1_555 127.4 B DG 6 B O6 DG 6 1_555 B K 101 G K K 1_555 B DG 13 B O6 DG 13 1_555 122.5 B DG 8 B O6 DG 8 1_555 B K 101 G K K 1_555 B DG 13 B O6 DG 13 1_555 155.7 B DG 10 B O6 DG 10 1_555 B K 101 G K K 1_555 B DG 13 B O6 DG 13 1_555 72.6 B DG 11 B O6 DG 11 1_555 B K 101 G K K 1_555 B DG 13 B O6 DG 13 1_555 89.5 B DG 3 B OP2 DG 3 1_555 B NA 102 H NA NA 1_555 B DG 10 B OP2 DG 10 1_555 22.5 B DG 3 B OP2 DG 3 1_555 B NA 102 H NA NA 1_555 B HOH 219 J O HOH 1_555 91.5 B DG 10 B OP2 DG 10 1_555 B NA 102 H NA NA 1_555 B HOH 219 J O HOH 1_555 78.0 B DG 3 B OP2 DG 3 1_555 B NA 102 H NA NA 1_555 B HOH 221 J O HOH 1_556 88.0 B DG 10 B OP2 DG 10 1_555 B NA 102 H NA NA 1_555 B HOH 221 J O HOH 1_556 103.0 B HOH 219 J O HOH 1_555 B NA 102 H NA NA 1_555 B HOH 221 J O HOH 1_556 79.7 B DG 3 B OP2 DG 3 1_555 B NA 102 H NA NA 1_555 B HOH 246 J O HOH 1_555 91.5 B DG 10 B OP2 DG 10 1_555 B NA 102 H NA NA 1_555 B HOH 246 J O HOH 1_555 70.4 B HOH 219 J O HOH 1_555 B NA 102 H NA NA 1_555 B HOH 246 J O HOH 1_555 72.6 B HOH 221 J O HOH 1_556 B NA 102 H NA NA 1_555 B HOH 246 J O HOH 1_555 152.2 B DG 3 B OP2 DG 3 1_555 B NA 102 H NA NA 1_555 B HOH 249 J O HOH 1_556 94.4 B DG 10 B OP2 DG 10 1_555 B NA 102 H NA NA 1_555 B HOH 249 J O HOH 1_556 113.8 B HOH 219 J O HOH 1_555 B NA 102 H NA NA 1_555 B HOH 249 J O HOH 1_556 156.3 B HOH 221 J O HOH 1_556 B NA 102 H NA NA 1_555 B HOH 249 J O HOH 1_556 77.6 B HOH 246 J O HOH 1_555 B NA 102 H NA NA 1_555 B HOH 249 J O HOH 1_556 130.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O O HOH HOH 204 229 1.85 1 A B O O HOH HOH 224 202 1.93 1 B B O O HOH HOH 201 213 2.02 1 A B O O HOH HOH 218 203 2.06 1 B B OP2 O DG HOH 8 201 2.13 1 A A O O HOH HOH 239 268 2.18 1 A B O O HOH HOH 237 242 2.19 1 2.29 0.30 108.30 110.59 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 2.37 0.30 108.30 110.67 B B B O4' C1' N9 DG DG DG 6 6 6 N 1 B B O3' C3' DT DT 7 7 -0.039 0.006 1.419 1.380 N 1 A B O O HOH HOH 267 215 1.97 1_555 2_656 1 A B O O HOH HOH 204 218 2.06 1_555 2_646 1 A B O O HOH HOH 239 238 2.07 1_555 2_645 1 A B O O HOH HOH 210 203 2.07 1_555 2_645 1 A A O O HOH HOH 234 255 2.13 1_555 1_554 1 B B O O HOH HOH 201 202 2.18 1_555 2_645 1 A B O O HOH HOH 224 201 2.19 1_555 2_655 9.46 0.1563 0.1450 0.1455 0.88 23.09 2258 43111 45369 4.98 99.53 0.0729 1 FREE R-VALUE 1.35 MOLECULAR REPLACEMENT 16.1382 0.9000 1.1000 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 0.88 23.09 132 696 18 546 0 0.0095 624 1.1880 959 0.0488 102 0.0190 26 37.1531 262 0.2838 0.2919 0.90 132 2579 96.31 0.2858 0.2664 0.92 133 2703 98.40 0.2560 0.2516 0.94 133 2641 99.00 0.2252 0.2215 0.97 162 2648 99.61 0.2238 0.1963 0.99 164 2673 99.89 0.1765 0.1690 1.03 152 2720 99.83 0.1605 0.1530 1.06 142 2682 100.00 0.1357 0.1278 1.11 151 2680 100.00 0.1355 0.1135 1.16 148 2695 100.00 0.1200 0.1073 1.22 118 2738 99.96 0.1303 0.1180 1.29 121 2741 100.00 0.1471 0.1168 1.39 132 2677 99.93 0.1362 0.1295 1.53 146 2741 99.97 0.1287 0.1173 1.76 154 2697 99.93 0.1453 0.1390 2.21 124 2729 99.89 0.1462 0.1414 23.09 146 2767 99.86 5.41 0.878 23.09 9PLB 45563 0.996 0.104 0.059 0.119 1 7.6 4.0 100.0 1.280 0.878 0.893 1.4 2241 0.286 0.735 1.483 1 4.0 100 refinement PHENIX 1.21.1_5419 data reduction autoPROC data scaling autoPROC phasing PHENIX 1.21.2_5419 4 monoclinic P 1 21 1 P 2yb x,y,z -x,y+1/2,-z N JLM3 left-handed, parallel G-quadruplex in P1 21 1 Spacegroup 1 N N 1 N N 2 N N 3 N N 3 N N 4 N N 3 N N 4 N N 5 N N 5 N N metalc 2.876 A DG 1 A O6 DG 1 1_555 A K 102 D K K 1_555 metalc 2.832 A DG 1 A O6 DG 1 1_555 A K 103 E K K 1_555 metalc 2.802 A DG 3 A O6 DG 3 1_555 A K 102 D K K 1_555 metalc 2.305 A DG 3 A OP1 DG 3 1_555 A NA 104 F NA NA 1_555 metalc 2.882 A DG 4 A O6 DG 4 1_555 A K 102 D K K 1_555 metalc 2.862 A DG 4 A O6 DG 4 1_555 A K 103 E K K 1_555 metalc 2.709 A DG 6 A O6 DG 6 1_555 A K 102 D K K 1_555 metalc 2.850 A DG 8 A O6 DG 8 1_555 A K 102 D K K 1_555 metalc 2.840 A DG 8 A O6 DG 8 1_555 A K 103 E K K 1_555 metalc 2.822 A DG 10 A O6 DG 10 1_555 A K 102 D K K 1_555 metalc 2.840 A DG 11 A O6 DG 11 1_555 A K 102 D K K 1_555 metalc 2.818 A DG 11 A O6 DG 11 1_555 A K 103 E K K 1_555 metalc 2.310 A DG 11 A OP1 DG 11 1_555 A NA 104 F NA NA 1_554 metalc 2.768 A DG 13 A O6 DG 13 1_555 A K 102 D K K 1_555 metalc 2.794 A K 103 E K K 1_555 B DG 1 B O6 DG 1 1_555 metalc 2.846 A K 103 E K K 1_555 B DG 4 B O6 DG 4 1_555 metalc 2.846 A K 103 E K K 1_555 B DG 8 B O6 DG 8 1_555 metalc 2.874 A K 103 E K K 1_555 B DG 11 B O6 DG 11 1_555 metalc 2.201 A NA 104 F NA NA 1_555 A HOH 234 I O HOH 1_556 metalc 2.168 A NA 104 F NA NA 1_555 A HOH 252 I O HOH 1_555 metalc 2.277 A NA 104 F NA NA 1_555 A HOH 253 I O HOH 1_556 metalc 2.463 A NA 104 F NA NA 1_555 A HOH 255 I O HOH 1_555 metalc 2.657 A NA 104 F NA NA 1_555 A HOH 260 I O HOH 1_556 metalc 2.838 B DG 1 B O6 DG 1 1_555 B K 101 G K K 1_555 metalc 2.844 B DG 3 B O6 DG 3 1_555 B K 101 G K K 1_555 metalc 2.177 B DG 3 B OP2 DG 3 1_555 B NA 102 H NA NA 1_555 metalc 2.871 B DG 4 B O6 DG 4 1_555 B K 101 G K K 1_555 metalc 2.733 B DG 6 B O6 DG 6 1_555 B K 101 G K K 1_555 metalc 2.845 B DG 8 B O6 DG 8 1_555 B K 101 G K K 1_555 metalc 2.847 B DG 10 B O6 DG 10 1_555 B K 101 G K K 1_555 metalc 2.284 B DG 10 B OP2 DG 10 1_555 B NA 102 H NA NA 1_554 metalc 2.825 B DG 11 B O6 DG 11 1_555 B K 101 G K K 1_555 metalc 2.735 B DG 13 B O6 DG 13 1_555 B K 101 G K K 1_555 metalc 2.392 B NA 102 H NA NA 1_555 B HOH 219 J O HOH 1_555 metalc 2.442 B NA 102 H NA NA 1_555 B HOH 221 J O HOH 1_556 metalc 2.305 B NA 102 H NA NA 1_555 B HOH 246 J O HOH 1_555 metalc 2.445 B NA 102 H NA NA 1_555 B HOH 249 J O HOH 1_556 hydrog TYPE_6_PAIR A DG 1 A N1 DG 1 1_555 A DG 4 A O6 DG 4 1_555 hydrog TYPE_6_PAIR A DG 1 A N2 DG 1 1_555 A DG 4 A N7 DG 4 1_555 hydrog TYPE_6_PAIR A DG 1 A N7 DG 1 1_555 A DG 11 A N2 DG 11 1_555 hydrog TYPE_6_PAIR A DG 1 A O6 DG 1 1_555 A DG 11 A N1 DG 11 1_555 hydrog TYPE_6_PAIR A DG 3 A N1 DG 3 1_555 A DG 6 A O6 DG 6 1_555 hydrog TYPE_6_PAIR A DG 3 A N2 DG 3 1_555 A DG 6 A N7 DG 6 1_555 hydrog TYPE_6_PAIR A DG 3 A N7 DG 3 1_555 A DG 13 A N2 DG 13 1_555 hydrog TYPE_6_PAIR A DG 3 A O6 DG 3 1_555 A DG 13 A N1 DG 13 1_555 hydrog TYPE_6_PAIR A DG 4 A N1 DG 4 1_555 A DG 8 A O6 DG 8 1_555 hydrog TYPE_6_PAIR A DG 4 A N2 DG 4 1_555 A DG 8 A N7 DG 8 1_555 hydrog TYPE_6_PAIR A DG 6 A N1 DG 6 1_555 A DG 10 A O6 DG 10 1_555 hydrog TYPE_6_PAIR A DG 6 A N2 DG 6 1_555 A DG 10 A N7 DG 10 1_555 hydrog TYPE_6_PAIR A DG 8 A N1 DG 8 1_555 A DG 11 A O6 DG 11 1_555 hydrog TYPE_6_PAIR A DG 8 A N2 DG 8 1_555 A DG 11 A N7 DG 11 1_555 hydrog TYPE_6_PAIR A DG 10 A N1 DG 10 1_555 A DG 13 A O6 DG 13 1_555 hydrog TYPE_6_PAIR A DG 10 A N2 DG 10 1_555 A DG 13 A N7 DG 13 1_555 hydrog TYPE_6_PAIR B DG 1 B N1 DG 1 1_555 B DG 4 B O6 DG 4 1_555 hydrog TYPE_6_PAIR B DG 1 B N2 DG 1 1_555 B DG 4 B N7 DG 4 1_555 hydrog TYPE_6_PAIR B DG 1 B N7 DG 1 1_555 B DG 11 B N2 DG 11 1_555 hydrog TYPE_6_PAIR B DG 1 B O6 DG 1 1_555 B DG 11 B N1 DG 11 1_555 hydrog TYPE_6_PAIR B DG 3 B N1 DG 3 1_555 B DG 6 B O6 DG 6 1_555 hydrog TYPE_6_PAIR B DG 3 B N2 DG 3 1_555 B DG 6 B N7 DG 6 1_555 hydrog TYPE_6_PAIR B DG 3 B N7 DG 3 1_555 B DG 13 B N2 DG 13 1_555 hydrog TYPE_6_PAIR B DG 3 B O6 DG 3 1_555 B DG 13 B N1 DG 13 1_555 hydrog TYPE_6_PAIR B DG 4 B N1 DG 4 1_555 B DG 8 B O6 DG 8 1_555 hydrog TYPE_6_PAIR B DG 4 B N2 DG 4 1_555 B DG 8 B N7 DG 8 1_555 hydrog TYPE_6_PAIR B DG 6 B N1 DG 6 1_555 B DG 10 B O6 DG 10 1_555 hydrog TYPE_6_PAIR B DG 6 B N2 DG 6 1_555 B DG 10 B N7 DG 10 1_555 hydrog TYPE_6_PAIR B DG 8 B N1 DG 8 1_555 B DG 11 B O6 DG 11 1_555 hydrog TYPE_6_PAIR B DG 8 B N2 DG 8 1_555 B DG 11 B N7 DG 11 1_555 hydrog TYPE_6_PAIR B DG 10 B N1 DG 10 1_555 B DG 13 B O6 DG 13 1_555 hydrog TYPE_6_PAIR B DG 10 B N2 DG 10 1_555 B DG 13 B N7 DG 13 1_555 DNA G-quadruplex, left-handed G-quadruplex, parallel, bulge, DNA 9PLB PDB 1 1 9PLB 1 13 9PLB 1 13 9PLB A 1 1 13 1 13 9PLB 1 13 9PLB B 1 1 13 4 P 1 21 1 P 2yb