1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Brancaccio, D. Carotenuto, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C6 H13 N O2 131.173 D-LEUCINE D-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N C N 8 N N N 9 N C N 10 N N N 11 N N N 12 N O N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N N N 29 R C N 30 N C N 31 N C N 32 N C N 33 N C N 34 N C N 35 N O N 36 N O N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N N N 51 S C N 52 N C N 53 N O N 54 N C N 55 N C N 56 N C N 57 N O N 58 N O N 59 N O N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N N N 70 S C N 71 N C N 72 N O N 73 S C N 74 N C N 75 N C N 76 N C N 77 N O N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N N N 92 S C N 93 N C N 94 N O N 95 N C N 96 N C N 97 N C N 98 N C N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 S C N 115 N C N 116 N O N 117 N C N 118 N C N 119 N C N 120 N C N 121 N N N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 N H N 140 N H N 141 N N N 142 S C N 143 N C N 144 N O N 145 N C Y 146 N C Y 147 N C Y 148 N C Y 149 N C Y 150 N C Y 151 N C N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N N N 165 S C N 166 N C N 167 N O N 168 N C N 169 N C N 170 N C N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C Y 186 N C Y 187 N C Y 188 N C Y 189 N N Y 190 N C Y 191 N C Y 192 N C Y 193 N C Y 194 N C N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N N N 209 S C N 210 N C N 211 N O N 212 N C N 213 N C N 214 N C N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N doub N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N doub N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N doub N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing Y 145 N doub Y 146 N sing Y 147 N sing N 148 N sing Y 149 N doub N 150 N sing Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing Y 185 N doub Y 186 N sing Y 187 N sing N 188 N sing Y 189 N doub Y 190 N sing Y 191 N sing N 192 N sing Y 193 N sing Y 194 N doub N 195 N sing Y 196 N doub N 197 N sing Y 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 64 11675 11694 10.1021/acs.jmedchem.1c01033 34296619 First-in-Class Cyclic Temporin L Analogue: Design, Synthesis, and Antimicrobial Assessment. 2021 0000-0003-2163-5163 0000-0002-9286-4433 0000-0001-7532-5449 0000-0002-2181-2142 0000-0003-0179-4116 0000-0002-5991-5868 0000-0002-9607-229X 0000-0002-6854-8123 10.2210/pdb7osd/pdb pdb_00007osd 10.13018/BMR34634 1724.140 PHE-VAL-PRO-TRP-PHE-LYS-LYS-PHE-DLE-GLU-ARG-ILE-LEU-NH2 1 syn polymer no yes FVPWFKKF(DLE)ERIL(NH2) FVPWFKKFLERILX A polypeptide(L) n n n n n n n n n n n n n n citation chem_comp_atom chem_comp_bond database_2 pdbx_entry_details pdbx_modification_feature repository Initial release Database references Data collection Database references Structure summary 1 0 2021-08-11 1 1 2021-08-25 1 2 2024-11-06 _citation.journal_volume _citation.page_first _citation.page_last _database_2.pdbx_DOI _pdbx_entry_details.has_protein_modification NMR Solution Structure of Peptide 12: First-in-class cyclic Temporin L analogue with antibacterial and antibiofilm activities N PDBE Y PDBE 2021-06-08 REL REL REL 8407 Rana temporaria sample 1 14 N Y A NH2 14 Terminal amidation A NH2 14 A LEU 13 LEU A LEU 13 1_555 NH2 14 1_555 None structures with the least restraint violations 200 10 isotropic 1 1D 1H isotropic 1 2D 1H-1H NOESY isotropic 1 2D 1H-1H TOCSY isotropic 1 2D 1H-1H COSY 2.0 mM natural abundance 180 mM d-25 20 mM d-38 0.0 mM conditions_1 5.0 pH 1 atm 298 K simulated annealing 1 lowest energy 2.0 mM PHE-VAL-PRO-TRP-PHE-LYS-LYS-PHE-DLE-GLU-ARG-ILE-LEU-NH2, 180 mM d-25 SDS, 20 mM d-38 DPC, 90% H2O/10% D2O sample_1 90% H2O/10% D2O micelle Accelrys Software Inc. refinement Insight II Guntert, Mumenthaler and Wuthrich structure calculation CYANA Bartels et al. chemical shift assignment XEASY Bartels et al. peak picking XEASY Bruker Biospin processing TopSpin Bruker Biospin collection TopSpin 700 Bruker AVANCE NEO PHE 1 n 1 PHE 1 A VAL 2 n 2 VAL 2 A PRO 3 n 3 PRO 3 A TRP 4 n 4 TRP 4 A PHE 5 n 5 PHE 5 A LYS 6 n 6 LYS 6 A LYS 7 n 7 LYS 7 A PHE 8 n 8 PHE 8 A DLE 9 n 9 DLE 9 A GLU 10 n 10 GLU 10 A ARG 11 n 11 ARG 11 A ILE 12 n 12 ILE 12 A LEU 13 n 13 LEU 13 A NH2 14 n 14 NH2 14 A author_defined_assembly 1 monomeric none 110 1 1840 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A OE2 GLU 10 A OE2 GLU 10 1 Y 2 A OE2 GLU 10 A OE2 GLU 10 1 Y 3 A OE2 GLU 10 A OE2 GLU 10 1 Y 4 A OE2 GLU 10 A OE2 GLU 10 1 Y 5 A OE2 GLU 10 A OE2 GLU 10 1 Y 6 A OE2 GLU 10 A OE2 GLU 10 1 Y 7 A OE2 GLU 10 A OE2 GLU 10 1 Y 8 A OE2 GLU 10 A OE2 GLU 10 1 Y 9 A OE2 GLU 10 A OE2 GLU 10 1 Y 10 A OE2 GLU 10 A OE2 GLU 10 1 Y 1 A A NZ CD LYS GLU 6 10 1.33 2 A A NZ CD LYS GLU 6 10 1.34 3 A A NZ CD LYS GLU 6 10 1.33 4 A A NZ CD LYS GLU 6 10 1.34 5 A A NZ CD LYS GLU 6 10 1.33 6 A A NZ CD LYS GLU 6 10 1.34 7 A A NZ CD LYS GLU 6 10 1.33 8 A A NZ CD LYS GLU 6 10 1.33 9 A A NZ CD LYS GLU 6 10 1.34 10 A A NZ CD LYS GLU 6 10 1.34 1 3.59 0.50 120.30 123.89 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 2 3.49 0.50 120.30 123.79 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 3 3.42 0.50 120.30 123.72 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 4 3.32 0.50 120.30 123.62 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 5 3.52 0.50 120.30 123.82 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 6 3.41 0.50 120.30 123.71 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 7 3.39 0.50 120.30 123.69 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 8 3.25 0.50 120.30 123.55 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 9 3.36 0.50 120.30 123.66 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 10 3.36 0.50 120.30 123.66 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 1 A TRP 4 -68.20 -73.47 1 A GLU 10 -86.19 49.64 1 A ARG 11 -138.73 -58.25 2 A TRP 4 -81.17 -93.02 2 A PHE 8 -24.49 -64.95 3 A PRO 3 -69.58 86.45 3 A TRP 4 -88.68 -84.44 3 A GLU 10 -91.58 50.09 3 A ARG 11 -136.15 -50.36 4 A PRO 3 -69.69 86.59 4 A TRP 4 -88.18 -86.12 4 A ARG 11 -148.39 -53.27 5 A PRO 3 -68.52 88.90 5 A TRP 4 -90.60 -83.68 5 A GLU 10 -98.57 55.95 5 A ARG 11 -120.26 -58.21 7 A PRO 3 -68.13 91.64 7 A TRP 4 -92.62 -82.46 8 A VAL 2 51.72 80.02 8 A TRP 4 -77.76 -85.92 8 A GLU 10 -95.86 53.42 8 A ARG 11 -130.41 -51.03 10 A TRP 4 -76.36 -80.79 N NMR Solution Structure of Peptide 12: First-in-class cyclic Temporin L analogue with antibacterial and antibiofilm activities 1 N N A PHE 8 A PHE 8 HELX_P A LEU 13 A LEU 13 1 AA1 6 covale 1.350 both A PHE 8 A C PHE 8 1_555 A DLE 9 A N DLE 9 1_555 covale 1.346 both A DLE 9 A C DLE 9 1_555 A GLU 10 A N GLU 10 1_555 covale 1.322 both A LEU 13 A C LEU 13 1_555 A NH2 14 A N NH2 14 1_555 ANTIMICROBIAL PROTEIN Temporins, Antimicrobial, ANTIMICROBIAL PROTEIN 7OSD PDB 1 1 7OSD 1 14 7OSD 1 14 7OSD A 1 1 14