1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0001-7780-5278 Jones, C.P. 0000-0003-4549-1619 Ferre-D'Amare, A.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 90.00 90.00 90.00 1.00 1.00 1.00 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C23 H25 N3 O2 S 2 407.529 4-[(3-{2-[(2-methoxyethyl)amino]-2-oxoethyl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium non-polymer C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H Y 73 N C N 74 N C Y 75 N C N 76 N C N 77 N C N 78 N C N 79 N C N 80 N C Y 81 N C Y 82 N C N 83 N C Y 84 N C Y 85 N C Y 86 N C Y 87 N C Y 88 N C Y 89 N C Y 90 N C Y 91 N C Y 92 N C Y 93 N C Y 94 N C Y 95 N C N 96 N N Y 97 N N Y 98 N N N 99 N O N 100 N O Y 101 N S N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N O N 128 N P N 129 N O N 130 N O N 131 N O N 132 N C N 133 R C N 134 N O N 135 S C N 136 N O N 137 R C N 138 N O N 139 R C Y 140 N N Y 141 N C Y 142 N N Y 143 N C N 144 N C N 145 N O N 146 N N N 147 N C N 148 N N N 149 N N Y 150 N C N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N O N 166 N P N 167 N O N 168 N O N 169 N O N 170 N C N 171 R C N 172 N O N 173 S C N 174 N O N 175 R C N 176 N O N 177 R C N 178 N N N 179 N C N 180 N O N 181 N N N 182 N C N 183 N O N 184 N C N 185 N C N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing Y 77 N doub Y 78 N sing N 79 N sing Y 80 N doub Y 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing Y 90 N sing Y 91 N doub N 92 N sing Y 93 N doub Y 94 N sing Y 95 N sing Y 96 N sing Y 97 N doub Y 98 N sing Y 99 N doub Y 100 N doub Y 101 N sing Y 102 N sing Y 103 N sing Y 104 N doub Y 105 N sing Y 106 N doub Y 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing Y 157 N sing Y 158 N sing Y 159 N doub N 160 N sing Y 161 N sing N 162 N sing Y 163 N doub N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N doub N 206 N sing N 207 N sing To Be Published 0353 Symmetric scaffolds enable de novo modelling of RNA by cryoEM 0000-0001-7780-5278 0000-0003-4549-1619 10.2210/pdb9nap/pdb pdb_00009nap 9NAP 494697 3.01 FSC 0.143 CUT-OFF POINT REL 2025-02-12 RCSB 2026-03-04 2026-03-04 RNA scaffold attached to Mango in the presence of TO1-biotin 7.4 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 1 Scaffold RNA attached to Mango in the absence of ligand 0 RECOMBINANT COMPLEX 32644 unidentified 905931 in vitro transcription vector pT7-TP(deltai) PARTICLE 1 1 SINGLE PARTICLE 60 GATAN K3 BIOQUANTUM (6k x 4k) 300 FIELD EMISSION GUN SPOT SCAN TFS KRIOS BRIGHT FIELD 2500 500 1 PARTICLE SELECTION 1 MODEL REFINEMENT PHENIX 1.19.2_4158 IMAGE ACQUISITION 1 MASKING CTF CORRECTION 1 LAYERLINE INDEXING DIFFRACTION INDEXING MODEL FITTING OTHER INITIAL EULER ASSIGNMENT 1 FINAL EULER ASSIGNMENT 1 CLASSIFICATION 1 RECONSTRUCTION 1 VOLUME SELECTION 1 1 1 SERIES ALIGNMENT 1 1 1 MOLECULAR REPLACEMENT 1 1 1 LATTICE DISTORTION CORRECTION 1 1 1 SYMMETRY DETERMINATION 1 1 1 CRYSTALLOGRAPHY MERGING 1 1 1 RNA scaffold attached to Mango in the presence of TO1-biotin NO NO NO YES 277 ETHANE 9NAP 100 FEI VITROBOT MARK IV 41611.629 RNA (82-MER) 1 syn polymer 407.529 4-[(3-{2-[(2-methoxyethyl)amino]-2-oxoethyl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium 1 syn non-polymer no no GGGCCACUGUUUCACUGUUGCGCUACAUCUCCCUACGAAGGAAGGUUUGGUAUGUGGUAUAUUCGAUGGGAGGCCACACG AAAGUGUGGAGUGACCAGUGGCCCCACCCUGAAGGUAAACUUGUAGCGC GGGCCACUGUUUCACUGUUGCGCUACAUCUCCCUACGAAGGAAGGUUUGGUAUGUGGUAUAUUCGAUGGGAGGCCACACG AAAGUGUGGAGUGACCAGUGGCCCCACCCUGAAGGUAAACUUGUAGCGC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n -9.155 1 20 A 14 A 92 -22.962 A_A14:U92_A 1 3.678 0.630 -2.170 -0.750 -3.230 1 19 A 15 A 91 -12.075 A_C15:G91_A 2 12.438 0.086 -1.316 -0.514 -11.356 1 20 A 16 A 90 -0.191 A_U16:A90_A 3 -11.180 -0.255 0.163 -0.055 0.512 1 19 A 74 A 89 -4.027 A_C74:G89_A 4 -1.776 0.202 0.108 -0.145 2.388 1 19 A 75 A 88 0.191 A_C75:G88_A 5 -8.105 0.154 0.139 -0.122 -12.862 1 20 A 76 A 87 0.059 A_A76:U87_A 6 -4.843 -0.033 -0.094 0.094 -6.108 1 19 A 77 A 86 -1.975 A_C77:G86_A 7 2.166 0.125 0.541 -0.129 -1.685 1 20 A 78 A 85 -0.658 A_A78:U85_A 8 -13.913 -0.122 0.327 -0.133 4.978 1 19 A 79 A 84 -7.547 A_C79:G84_A 9 -6.585 -0.092 -1.546 -0.549 -12.741 1 19 A 17 A 120 -1.781 A_G17:C120_A 10 5.547 -0.198 -0.182 -0.121 0.119 1 20 A 18 A 119 3.417 A_U18:A119_A 11 9.169 -0.428 1.742 -0.514 19.740 4 24 A 19 A 117 -104.256 A_U19:A117_A 12 -3.443 3.250 -0.313 -1.187 -30.410 1 20 A 25 A 124 32.036 A_A25:U124_A 13 31.065 0.583 1.535 -0.976 -4.817 1 19 A 26 A 123 -4.263 A_C26:G123_A 14 3.528 0.094 1.277 -0.478 -9.077 1 20 A 27 A 122 -2.464 A_A27:U122_A 15 -3.470 0.230 -1.799 -0.659 6.184 1 16 A 28 A 121 -17.556 A_U28:U121_A 16 -2.010 2.911 -1.647 -2.284 -1.364 1 19 A 29 A 72 -0.359 A_C29:G72_A 17 -5.509 0.176 0.029 -0.154 -0.120 1 20 A 30 A 71 2.493 A_U30:A71_A 18 6.703 -0.067 -0.328 -0.093 -0.381 1 19 A 31 A 70 0.456 A_C31:G70_A 19 6.979 0.191 -0.400 -0.153 1.958 1 19 A 32 A 69 -1.992 A_C32:G69_A 20 10.431 0.094 -0.496 -0.217 7.460 1 19 A 33 A 68 1.916 A_C33:G68_A 21 11.083 0.157 -0.506 -0.177 25.099 1 16 A 34 A 67 11.868 A_U34:U67_A 22 -1.508 2.558 -0.447 -2.275 -3.300 9 A 35 A 66 -8.547 A_A35:A66_A 23 -4.728 -5.939 -1.041 -3.372 5.880 1 19 A 36 A 65 1.672 A_C36:G65_A 24 -1.274 0.158 -0.740 -0.151 -9.980 1 19 A 37 A 64 3.708 A_G37:C64_A 25 -8.399 -0.228 -0.898 -0.295 -9.299 1 20 A 38 A 63 1.527 A_A38:U63_A 26 -3.684 0.162 -0.339 -0.101 3.095 1 20 A 39 A 62 -3.006 A_A39:U62_A 27 -5.191 0.052 -0.045 -0.087 -8.650 A 43 A 55 -116.624 A_A43:U55_A 28 11.924 -1.338 1.267 2.801 -9.144 3 6 A 44 A 40 101.718 A_G44:G40_A 29 -3.449 -1.141 0.415 -2.957 11.779 3 6 A 49 A 56 -82.458 A_G49:G56_A 30 27.449 1.934 -0.666 3.278 34.676 3 6 A 50 A 54 -91.570 A_G50:G54_A 31 -6.047 0.622 -1.363 3.676 17.720 2 12 A 46 A 53 165.385 A_U46:U53_A 32 9.673 1.499 0.155 -0.218 -7.713 3 6 A 41 A 45 -102.119 A_G41:G45_A 33 -9.621 0.931 0.709 3.004 11.474 2 13 A 51 A 58 178.953 A_U51:U58_A 34 4.274 2.583 0.319 2.671 -1.660 A 52 A 59 -160.823 A_A52:A59_A 35 -8.934 -4.692 -0.362 5.842 -15.783 1 A 57 A 60 -90.102 A_G57:U60_A 36 -2.674 3.128 -0.161 2.514 3.020 31.112 A A 14 15 3.388 A A 92 91 3.183 1.808 0.195 -1.442 AA_A14C15:G91U92_AA 1 -5.269 9.874 30.622 -3.018 -1.327 1.402 47.536 A A 15 16 48.143 A A 91 90 3.572 34.895 1.397 -1.667 AA_C15U16:A90G91_AA 2 3.650 -5.036 32.593 -4.665 -1.462 3.435 39.902 A A 16 74 -11.199 A A 90 89 3.010 -7.564 -1.212 -1.743 AA_U16C74:G89A90_AA 3 -6.822 10.099 38.631 -1.679 0.987 2.569 33.591 A A 74 75 7.481 A A 89 88 2.826 4.312 0.157 -1.890 AA_C74C75:G88G89_AA 4 0.183 -0.318 33.320 -3.854 -0.247 0.819 31.868 A A 75 76 39.101 A A 88 87 3.090 19.923 -0.381 -2.573 AA_C75A76:U87G88_AA 5 2.146 -4.212 24.907 -7.139 0.958 2.723 34.825 A A 76 77 10.266 A A 87 86 2.906 6.091 -0.677 -1.228 AA_A76C77:G86U87_AA 6 -5.313 8.954 33.902 -2.861 0.425 1.946 39.792 A A 77 78 32.090 A A 86 85 2.856 20.804 0.010 -0.992 AA_C77A78:U85G86_AA 7 -3.410 5.260 33.941 -3.385 -0.330 3.582 22.530 A A 78 79 0.257 A A 85 84 3.710 0.100 -0.825 -1.347 AA_A78C79:G84U85_AA 8 2.673 -6.857 22.373 -3.489 3.207 3.613 30.656 A A 17 18 0.508 A A 120 119 3.517 0.266 -0.892 -1.809 AA_G17U18:A119C120_AA 9 -7.594 14.508 29.721 -3.479 0.030 2.270 41.073 A A 25 26 -20.678 A A 124 123 2.946 -13.030 -1.684 -4.231 AA_A25C26:G123U124_AA 10 27.187 -43.147 28.225 -4.667 5.244 1.689 44.167 A A 26 27 37.864 A A 123 122 3.544 24.953 1.039 -2.000 AA_C26A27:U122G123_AA 11 24.533 -37.227 27.383 -5.026 0.945 2.725 46.233 A A 27 28 6.197 A A 122 121 2.841 4.857 0.005 -1.029 AA_A27U28:U121U122_AA 12 -0.319 0.407 45.990 -1.664 -0.029 0.099 12.060 A A 28 29 48.738 A A 121 72 3.920 7.810 -1.667 -3.582 AA_U28C29:G72U121_AA 13 -8.327 51.964 3.891 -26.410 -2.041 2.580 24.100 A A 29 30 23.092 A A 72 71 3.533 9.305 -0.619 -1.904 AA_C29U30:A71G72_AA 14 -5.576 13.839 21.553 -7.505 -0.284 2.524 33.634 A A 30 31 14.692 A A 71 70 3.066 8.415 0.022 -1.847 AA_U30C31:G70A71_AA 15 0.941 -1.643 32.580 -4.386 0.096 2.341 28.739 A A 31 32 16.779 A A 70 69 3.056 8.216 0.252 -2.127 AA_C31C32:G69G70_AA 16 0.589 -1.203 27.558 -5.840 -0.395 2.190 35.915 A A 32 33 19.055 A A 69 68 2.906 11.554 0.035 -1.828 AA_C32C33:G68G69_AA 17 0.070 -0.115 34.064 -4.288 -0.050 2.261 37.463 A A 33 34 14.580 A A 68 67 2.592 9.273 0.307 -1.047 AA_C33U34:U67G68_AA 18 -0.650 1.022 36.331 -2.547 -0.542 -2.030 25.305 A A 34 35 70.375 A A 67 66 3.578 20.985 -1.396 -3.801 AA_U34A35:A66U67_AA 19 -13.925 46.699 2.483 -11.343 1.417 2.957 58.727 A A 35 36 -1.022 A A 66 65 2.974 -1.002 0.854 -0.606 AA_A35C36:G65A66_AA 20 -1.836 1.872 58.693 -0.571 -0.957 3.312 32.361 A A 36 37 13.633 A A 65 64 3.870 7.525 -0.461 -1.818 AA_C36G37:C64G65_AA 21 2.491 -4.513 31.401 -4.744 1.318 2.748 34.531 A A 37 38 11.508 A A 64 63 3.058 6.779 -0.260 -1.389 AA_G37A38:U63C64_AA 22 -3.351 5.689 33.717 -3.283 -0.028 2.694 34.452 A A 38 39 5.894 A A 63 62 2.800 3.486 -0.276 -0.957 AA_A38A39:U62U63_AA 23 -0.166 0.280 34.280 -2.072 0.444 2.790 111.952 A A 39 43 -20.794 A A 62 55 2.824 -34.147 -3.546 1.697 AA_A39A43:U55U62_AA 24 -18.518 11.277 107.216 1.383 1.944 3.142 -84.418 A A 43 44 -1.705 A A 55 40 3.109 2.288 -0.427 -0.420 AA_A43G44:G40U55_AA 25 8.625 6.427 -84.034 0.262 -0.124 0.584 -177.099 A A 44 49 -0.080 A A 40 56 0.581 0.159 1.529 3.589 AA_G44G49:G56G40_AA 26 -10.033 -5.018 -177.088 -1.795 0.764 2.626 27.614 A A 49 50 9.680 A A 56 54 2.929 4.571 -0.204 -1.041 AA_G49G50:G54G56_AA 27 5.414 -11.466 26.707 -3.141 1.566 5.909 152.426 A A 50 46 -7.569 A A 54 53 5.809 -14.699 0.374 -3.439 AA_G50U46:U53G54_AA 28 -6.926 3.567 152.140 -1.675 -0.238 -5.887 31.109 A A 46 41 -8.940 A A 53 45 -6.282 -4.569 -0.597 1.351 AA_U46G41:G45U53_AA 29 15.539 -30.403 26.650 0.760 -4.871 3.098 -169.593 A A 51 52 5.212 A A 58 59 3.126 -10.380 -1.695 -1.043 AA_U51A52:A59U58_AA 30 -13.736 -6.897 -169.474 0.537 -0.868 3.176 79.985 A A 52 57 4.111 A A 59 60 3.177 5.280 1.706 -1.210 AA_A52G57:U60A59_AA 31 4.077 -3.174 79.753 -1.077 -1.222 repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release 1 0 2026-03-04 1 0 2026-03-04 1 0 1 2026-03-04 1 0 1 2026-03-04 1 0 2 2026-03-04 1 0 2026-03-04 1 0 1 2026-03-04 1 0 2026-03-04 United States National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) adrian.ferre@nih.gov 0000-0003-4549-1619 Ferre-D'Amare Adrian R principal investigator/group leader RNA scaffold attached to Mango in the presence of TO1-biotin N RCSB Y RCSB 2025-02-12 REL EKJ 4-[(3-{2-[(2-methoxyethyl)amino]-2-oxoethyl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium 32630 synthetic construct sample 1 129 N N EKJ 101 2 EKJ EKJ 201 A n 1 9 A n 2 10 A n 3 11 A n 4 12 A n 5 13 A A 14 n 6 A 14 A C 15 n 7 C 15 A U 16 n 8 U 16 A G 17 n 9 G 17 A U 18 n 10 U 18 A U 19 n 11 U 19 A n 12 A 19 A n 13 B 19 A n 14 C 19 A n 15 D 19 A n 16 E 19 A n 17 F 19 A n 18 G 19 A n 19 H 19 A n 20 I 19 A n 21 J 19 A n 22 K 19 A n 23 L 19 A n 24 M 19 A A 25 n 25 A 25 A C 26 n 26 C 26 A A 27 n 27 A 27 A U 28 n 28 U 28 A C 29 n 29 C 29 A U 30 n 30 U 30 A C 31 n 31 C 31 A C 32 n 32 C 32 A C 33 n 33 C 33 A U 34 n 34 U 34 A A 35 n 35 A 35 A C 36 n 36 C 36 A G 37 n 37 G 37 A A 38 n 38 A 38 A A 39 n 39 A 39 A G 40 n 40 G 40 A G 41 n 41 G 41 A A 42 n 42 A 42 A A 43 n 43 A 43 A G 44 n 44 G 44 A G 45 n 45 G 45 A U 46 n 46 U 46 A U 47 n 47 U 47 A U 48 n 48 U 48 A G 49 n 49 G 49 A G 50 n 50 G 50 A U 51 n 51 U 51 A A 52 n 52 A 52 A U 53 n 53 U 53 A G 54 n 54 G 54 A U 55 n 55 U 55 A G 56 n 56 G 56 A G 57 n 57 G 57 A U 58 n 58 U 58 A A 59 n 59 A 59 A U 60 n 60 U 60 A A 61 n 61 A 61 A U 62 n 62 U 62 A U 63 n 63 U 63 A C 64 n 64 C 64 A G 65 n 65 G 65 A A 66 n 66 A 66 A U 67 n 67 U 67 A G 68 n 68 G 68 A G 69 n 69 G 69 A G 70 n 70 G 70 A A 71 n 71 A 71 A G 72 n 72 G 72 A G 73 n 73 G 73 A C 74 n 74 C 74 A C 75 n 75 C 75 A A 76 n 76 A 76 A C 77 n 77 C 77 A A 78 n 78 A 78 A C 79 n 79 C 79 A G 80 n 80 G 80 A A 81 n 81 A 81 A A 82 n 82 A 82 A A 83 n 83 A 83 A G 84 n 84 G 84 A U 85 n 85 U 85 A G 86 n 86 G 86 A U 87 n 87 U 87 A G 88 n 88 G 88 A G 89 n 89 G 89 A A 90 n 90 A 90 A G 91 n 91 G 91 A U 92 n 92 U 92 A n 93 93 A n 94 94 A n 95 95 A n 96 96 A n 97 97 A n 98 98 A n 99 99 A n 100 100 A n 101 101 A n 102 102 A n 103 103 A n 104 104 A n 105 105 A n 106 106 A n 107 107 A n 108 108 A n 109 109 A n 110 110 A n 111 111 A n 112 112 A n 113 113 A n 114 114 A n 115 115 A n 116 116 A A 117 n 117 A 117 A A 118 n 118 A 118 A A 119 n 119 A 119 A C 120 n 120 C 120 A U 121 n 121 U 121 A U 122 n 122 U 122 A G 123 n 123 G 123 A U 124 n 124 U 124 A n 125 125 A n 126 126 A n 127 127 A n 128 128 A n 129 129 A author_and_software_defined_assembly 1 monomeric not applicable electron microscopy 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 1.0 1_555 x,y,z identity operation 0.0 0.0 0.0 1 A G 9 A G 1 1 Y 1 A G 10 A G 2 1 Y 1 A G 11 A G 3 1 Y 1 A C 12 A C 4 1 Y 1 A C 13 A C 5 1 Y A 1 A U 19 A U 12 1 Y B 1 A C 19 A C 13 1 Y C 1 A A 19 A A 14 1 Y D 1 A C 19 A C 15 1 Y E 1 A U 19 A U 16 1 Y F 1 A G 19 A G 17 1 Y G 1 A U 19 A U 18 1 Y H 1 A U 19 A U 19 1 Y I 1 A G 19 A G 20 1 Y J 1 A C 19 A C 21 1 Y K 1 A G 19 A G 22 1 Y L 1 A C 19 A C 23 1 Y M 1 A U 19 A U 24 1 Y 1 A G 93 A G 93 1 Y 1 A A 94 A A 94 1 Y 1 A C 95 A C 95 1 Y 1 A C 96 A C 96 1 Y 1 A A 97 A A 97 1 Y 1 A G 98 A G 98 1 Y 1 A U 99 A U 99 1 Y 1 A G 100 A G 100 1 Y 1 A G 101 A G 101 1 Y 1 A C 102 A C 102 1 Y 1 A C 103 A C 103 1 Y 1 A C 104 A C 104 1 Y 1 A C 105 A C 105 1 Y 1 A A 106 A A 106 1 Y 1 A C 107 A C 107 1 Y 1 A C 108 A C 108 1 Y 1 A C 109 A C 109 1 Y 1 A U 110 A U 110 1 Y 1 A G 111 A G 111 1 Y 1 A A 112 A A 112 1 Y 1 A A 113 A A 113 1 Y 1 A G 114 A G 114 1 Y 1 A G 115 A G 115 1 Y 1 A U 116 A U 116 1 Y 1 A A 125 A A 125 1 Y 1 A G 126 A G 126 1 Y 1 A C 127 A C 127 1 Y 1 A G 128 A G 128 1 Y 1 A C 129 A C 129 1 Y 1 A A O2' OP2 U C 16 74 2.19 1 -3.69 0.60 114.90 111.21 A A A N1 C2 N3 U U U 19 19 19 N 1 -4.75 0.60 119.70 114.95 A A A C4 C5 C6 U U U 19 19 19 N 1 3.37 0.50 122.70 126.07 A A A C5 C6 N1 U U U 19 19 19 N 1 -3.27 0.50 129.30 126.03 A A A N1 C2 N3 A A A 25 25 25 N 1 -3.64 0.50 117.00 113.36 A A A C4 C5 C6 A A A 25 25 25 N 1 8.02 1.10 110.50 118.52 A A A O3' P OP1 G A A 41 42 42 Y 1 -8.66 0.90 105.70 97.04 A A A O5' P OP2 A A A 42 42 42 N 1 4.38 0.70 108.50 112.88 A A A O4' C1' N1 U U U 46 46 46 N 1 4.58 0.70 122.80 127.38 A A A N1 C2 O2 U U U 124 124 124 N 1 9.02 1.20 117.70 126.72 A A A C2 N1 C1' U U U 124 124 124 N 3.01 REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS) 0.007 1995 1.252 3098 19.298 982 0.057 410 0.009 85 N RNA scaffold attached to Mango in the presence of TO1-biotin 1 N N 2 N N hydrog WATSON-CRICK A A 14 A N1 A 6 1_555 A U 92 A N3 U 92 1_555 hydrog WATSON-CRICK A A 14 A N6 A 6 1_555 A U 92 A O4 U 92 1_555 hydrog WATSON-CRICK A C 15 A N3 C 7 1_555 A G 91 A N1 G 91 1_555 hydrog WATSON-CRICK A C 15 A N4 C 7 1_555 A G 91 A O6 G 91 1_555 hydrog WATSON-CRICK A C 15 A O2 C 7 1_555 A G 91 A N2 G 91 1_555 hydrog TYPE_18_PAIR A C 15 A N3 C 7 1_555 A U 92 A N3 U 92 1_555 hydrog TYPE_18_PAIR A C 15 A N4 C 7 1_555 A U 92 A O4 U 92 1_555 hydrog WATSON-CRICK A U 16 A N3 U 8 1_555 A A 90 A N1 A 90 1_555 hydrog WATSON-CRICK A U 16 A O4 U 8 1_555 A A 90 A N6 A 90 1_555 hydrog WATSON-CRICK A G 17 A N1 G 9 1_555 A C 120 A N3 C 120 1_555 hydrog WATSON-CRICK A G 17 A N2 G 9 1_555 A C 120 A O2 C 120 1_555 hydrog WATSON-CRICK A G 17 A O6 G 9 1_555 A C 120 A N4 C 120 1_555 hydrog WATSON-CRICK A U 18 A N3 U 10 1_555 A A 118 A N1 A 118 1_555 hydrog WATSON-CRICK A U 18 A O4 U 10 1_555 A A 118 A N6 A 118 1_555 hydrog WATSON-CRICK A U 18 A N3 U 10 1_555 A A 119 A N1 A 119 1_555 hydrog WATSON-CRICK A U 18 A O4 U 10 1_555 A A 119 A N6 A 119 1_555 hydrog REVERSED HOOGSTEEN A U 19 A N3 U 11 1_555 A A 117 A N7 A 117 1_555 hydrog REVERSED HOOGSTEEN A U 19 A O2 U 11 1_555 A A 117 A N6 A 117 1_555 hydrog WATSON-CRICK A A 25 A N1 A 25 1_555 A U 124 A N3 U 124 1_555 hydrog WATSON-CRICK A A 25 A N6 A 25 1_555 A U 124 A O4 U 124 1_555 hydrog WATSON-CRICK A C 26 A N3 C 26 1_555 A G 123 A N1 G 123 1_555 hydrog WATSON-CRICK A C 26 A N4 C 26 1_555 A G 123 A O6 G 123 1_555 hydrog WATSON-CRICK A C 26 A O2 C 26 1_555 A G 123 A N2 G 123 1_555 hydrog WATSON-CRICK A A 27 A N1 A 27 1_555 A U 122 A N3 U 122 1_555 hydrog WATSON-CRICK A A 27 A N6 A 27 1_555 A U 122 A O4 U 122 1_555 hydrog TYPE_16_PAIR A U 28 A N3 U 28 1_555 A U 121 A O4 U 121 1_555 hydrog TYPE_16_PAIR A U 28 A O2 U 28 1_555 A U 121 A N3 U 121 1_555 hydrog TYPE_16_PAIR A U 28 A N3 U 28 1_555 A U 122 A O4 U 122 1_555 hydrog TYPE_16_PAIR A U 28 A O2 U 28 1_555 A U 122 A N3 U 122 1_555 hydrog WATSON-CRICK A C 29 A N3 C 29 1_555 A G 72 A N1 G 72 1_555 hydrog WATSON-CRICK A C 29 A N4 C 29 1_555 A G 72 A O6 G 72 1_555 hydrog WATSON-CRICK A C 29 A O2 C 29 1_555 A G 72 A N2 G 72 1_555 hydrog WATSON-CRICK A U 30 A N3 U 30 1_555 A A 71 A N1 A 71 1_555 hydrog WATSON-CRICK A U 30 A O4 U 30 1_555 A A 71 A N6 A 71 1_555 hydrog WATSON-CRICK A C 31 A N3 C 31 1_555 A G 70 A N1 G 70 1_555 hydrog WATSON-CRICK A C 31 A N4 C 31 1_555 A G 70 A O6 G 70 1_555 hydrog WATSON-CRICK A C 31 A O2 C 31 1_555 A G 70 A N2 G 70 1_555 hydrog WATSON-CRICK A C 32 A N3 C 32 1_555 A G 69 A N1 G 69 1_555 hydrog WATSON-CRICK A C 32 A N4 C 32 1_555 A G 69 A O6 G 69 1_555 hydrog WATSON-CRICK A C 32 A O2 C 32 1_555 A G 69 A N2 G 69 1_555 hydrog WATSON-CRICK A C 33 A N3 C 33 1_555 A G 68 A N1 G 68 1_555 hydrog WATSON-CRICK A C 33 A N4 C 33 1_555 A G 68 A O6 G 68 1_555 hydrog WATSON-CRICK A C 33 A O2 C 33 1_555 A G 68 A N2 G 68 1_555 hydrog TYPE_16_PAIR A U 34 A N3 U 34 1_555 A U 67 A O4 U 67 1_555 hydrog TYPE_16_PAIR A U 34 A O2 U 34 1_555 A U 67 A N3 U 67 1_555 hydrog A-A MISPAIR A A 35 A N6 A 35 1_555 A A 66 A N3 A 66 1_555 hydrog WATSON-CRICK A C 36 A N3 C 36 1_555 A G 65 A N1 G 65 1_555 hydrog WATSON-CRICK A C 36 A N4 C 36 1_555 A G 65 A O6 G 65 1_555 hydrog WATSON-CRICK A C 36 A O2 C 36 1_555 A G 65 A N2 G 65 1_555 hydrog WATSON-CRICK A G 37 A N1 G 37 1_555 A C 64 A N3 C 64 1_555 hydrog WATSON-CRICK A G 37 A N2 G 37 1_555 A C 64 A O2 C 64 1_555 hydrog WATSON-CRICK A G 37 A O6 G 37 1_555 A C 64 A N4 C 64 1_555 hydrog WATSON-CRICK A A 38 A N1 A 38 1_555 A U 63 A N3 U 63 1_555 hydrog WATSON-CRICK A A 38 A N6 A 38 1_555 A U 63 A O4 U 63 1_555 hydrog WATSON-CRICK A A 39 A N1 A 39 1_555 A U 62 A N3 U 62 1_555 hydrog WATSON-CRICK A A 39 A N6 A 39 1_555 A U 62 A O4 U 62 1_555 hydrog TYPE_6_PAIR A G 40 A N1 G 40 1_555 A G 44 A O6 G 44 1_555 hydrog TYPE_6_PAIR A G 40 A N2 G 40 1_555 A G 44 A N7 G 44 1_555 hydrog TYPE_6_PAIR A G 40 A N7 G 40 1_555 A G 56 A N2 G 56 1_555 hydrog TYPE_6_PAIR A G 40 A O6 G 40 1_555 A G 56 A N1 G 56 1_555 hydrog TYPE_6_PAIR A G 41 A N1 G 41 1_555 A G 45 A O6 G 45 1_555 hydrog TYPE_6_PAIR A G 41 A N2 G 41 1_555 A G 45 A N7 G 45 1_555 hydrog TYPE_6_PAIR A G 41 A N7 G 41 1_555 A G 54 A N2 G 54 1_555 hydrog TYPE_6_PAIR A G 41 A O6 G 41 1_555 A G 54 A N1 G 54 1_555 hydrog A-U PAIR A A 43 A N6 A 43 1_555 A U 55 A O4 U 55 1_555 hydrog TYPE_6_PAIR A G 44 A N1 G 44 1_555 A G 49 A O6 G 49 1_555 hydrog TYPE_6_PAIR A G 44 A N2 G 44 1_555 A G 49 A N7 G 49 1_555 hydrog TYPE_6_PAIR A G 45 A N1 G 45 1_555 A G 50 A O6 G 50 1_555 hydrog TYPE_6_PAIR A G 45 A N2 G 45 1_555 A G 50 A N7 G 50 1_555 hydrog TYPE_12_PAIR A U 46 A N3 U 46 1_555 A U 53 A O4 U 53 1_555 hydrog TYPE_12_PAIR A U 46 A O4 U 46 1_555 A U 53 A N3 U 53 1_555 hydrog TYPE_6_PAIR A G 49 A N1 G 49 1_555 A G 56 A O6 G 56 1_555 hydrog TYPE_6_PAIR A G 49 A N2 G 49 1_555 A G 56 A N7 G 56 1_555 hydrog TYPE_6_PAIR A G 50 A N1 G 50 1_555 A G 54 A O6 G 54 1_555 hydrog TYPE_6_PAIR A G 50 A N2 G 50 1_555 A G 54 A N7 G 54 1_555 hydrog TYPE_13_PAIR A U 51 A N3 U 51 1_555 A U 58 A O2 U 58 1_555 hydrog TYPE_13_PAIR A U 51 A O2 U 51 1_555 A U 58 A N3 U 58 1_555 hydrog A-A MISPAIR A A 52 A N6 A 52 1_555 A A 59 A N7 A 59 1_555 hydrog U-A PAIR A U 55 A O2 U 55 1_555 A A 61 A N6 A 61 1_555 hydrog G-U MISPAIR A G 57 A N2 G 57 1_555 A U 60 A O4 U 60 1_555 hydrog WATSON-CRICK A C 74 A N3 C 74 1_555 A G 89 A N1 G 89 1_555 hydrog WATSON-CRICK A C 74 A N4 C 74 1_555 A G 89 A O6 G 89 1_555 hydrog WATSON-CRICK A C 74 A O2 C 74 1_555 A G 89 A N2 G 89 1_555 hydrog WATSON-CRICK A C 75 A N3 C 75 1_555 A G 88 A N1 G 88 1_555 hydrog WATSON-CRICK A C 75 A N4 C 75 1_555 A G 88 A O6 G 88 1_555 hydrog WATSON-CRICK A C 75 A O2 C 75 1_555 A G 88 A N2 G 88 1_555 hydrog WATSON-CRICK A A 76 A N1 A 76 1_555 A U 87 A N3 U 87 1_555 hydrog WATSON-CRICK A A 76 A N6 A 76 1_555 A U 87 A O4 U 87 1_555 hydrog WATSON-CRICK A C 77 A N3 C 77 1_555 A G 86 A N1 G 86 1_555 hydrog WATSON-CRICK A C 77 A N4 C 77 1_555 A G 86 A O6 G 86 1_555 hydrog WATSON-CRICK A C 77 A O2 C 77 1_555 A G 86 A N2 G 86 1_555 hydrog WATSON-CRICK A A 78 A N1 A 78 1_555 A U 85 A N3 U 85 1_555 hydrog WATSON-CRICK A A 78 A N6 A 78 1_555 A U 85 A O4 U 85 1_555 hydrog WATSON-CRICK A C 79 A N3 C 79 1_555 A G 84 A N1 G 84 1_555 hydrog WATSON-CRICK A C 79 A N4 C 79 1_555 A G 84 A O6 G 84 1_555 hydrog WATSON-CRICK A C 79 A O2 C 79 1_555 A G 84 A N2 G 84 1_555 RNA viral RNA, scaffold, engineering, RNA 9NAP PDB 1 1 9NAP 9 129 9NAP 9 129 9NAP A 1 1 129 1 P 1