1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0001-7780-5278 Jones, C.P. 0000-0003-4549-1619 Ferre-D'Amare, A.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 90.00 90.00 90.00 1.00 1.00 1.00 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N H N 113 N H N 114 N K N 115 N O N 116 N P N 117 N O N 118 N O N 119 N O N 120 N C N 121 R C N 122 N O N 123 S C N 124 N O N 125 R C N 126 N O N 127 R C N 128 N N N 129 N C N 130 N O N 131 N N N 132 N C N 133 N O N 134 N C N 135 N C N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N doub N 151 N sing N 152 N sing To Be Published 0353 Symmetric scaffolds enable de novo modelling of RNA by cryoEM 0000-0001-7780-5278 0000-0003-4549-1619 10.2210/pdb9nam/pdb pdb_00009nam 9NAM 312599 2.87 FSC 0.143 CUT-OFF POINT REL 2025-02-12 RCSB 2026-03-04 2026-03-04 RNA scaffold attached to Mango in the absence of ligand 7.4 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 1 Scaffold RNA attached to Mango in the absence of ligand 0 RECOMBINANT COMPLEX 32644 unidentified 905931 in vitro transcription vector pT7-TP(deltai) PARTICLE 1 1 SINGLE PARTICLE 60 GATAN K3 BIOQUANTUM (6k x 4k) 300 FIELD EMISSION GUN SPOT SCAN TFS KRIOS BRIGHT FIELD 2500 500 1 PARTICLE SELECTION 1 MODEL REFINEMENT PHENIX 1.19.2_4158 IMAGE ACQUISITION 1 MASKING CTF CORRECTION 1 LAYERLINE INDEXING DIFFRACTION INDEXING MODEL FITTING OTHER INITIAL EULER ASSIGNMENT 1 FINAL EULER ASSIGNMENT 1 CLASSIFICATION 1 RECONSTRUCTION 1 NO NO NO YES 277 ETHANE 9NAM 100 FEI VITROBOT MARK IV 41611.629 RNA (68-MER) 1 syn polymer 39.098 POTASSIUM ION 1 syn non-polymer 18.015 water 11 nat water no no GGGCCACUGUUUCACUGUUGCGCUACAUCUCCCUACGAAGGAAGGUUUGGUAUGUGGUAUAUUCGAUGGGAGGCCACACG AAAGUGUGGAGUGACCAGUGGCCCCACCCUGAAGGUAAACUUGUAGCGC GGGCCACUGUUUCACUGUUGCGCUACAUCUCCCUACGAAGGAAGGUUUGGUAUGUGGUAUAUUCGAUGGGAGGCCACACG AAAGUGUGGAGUGACCAGUGGCCCCACCCUGAAGGUAAACUUGUAGCGC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n -4.703 1 20 A 14 A 92 -11.189 A_A14:U92_A 1 -7.741 0.125 0.389 -0.144 -4.878 1 19 A 15 A 91 -6.425 A_C15:G91_A 2 -6.572 0.171 0.322 -0.083 0.878 1 20 A 16 A 90 -11.079 A_U16:A90_A 3 -6.653 -0.060 0.349 -0.055 3.015 1 19 A 74 A 89 -0.298 A_C74:G89_A 4 -3.036 0.170 0.066 -0.116 -0.266 1 19 A 75 A 88 -1.877 A_C75:G88_A 5 -13.720 0.179 0.027 -0.079 -12.871 1 20 A 76 A 87 -6.433 A_A76:U87_A 6 1.461 0.298 0.087 0.145 -5.272 1 19 A 77 A 86 0.583 A_C77:G86_A 7 3.362 0.171 0.061 -0.085 -4.184 1 20 A 78 A 85 0.748 A_A78:U85_A 8 -8.595 0.021 0.500 -0.268 0.026 1 19 A 79 A 84 -2.063 A_C79:G84_A 9 -3.352 0.169 0.266 -0.229 -11.944 1 19 A 17 A 120 -2.825 A_G17:C120_A 10 -8.640 -0.219 0.042 -0.191 -7.986 1 20 A 18 A 119 -6.225 A_U18:A119_A 11 -8.789 -0.146 0.294 -0.032 -1.960 1 20 A 19 A 118 -4.209 A_U19:A118_A 12 -6.312 -0.082 0.491 -0.031 -0.469 1 19 A 20 A 129 1.442 A_G20:C129_A 13 4.027 -0.243 0.539 -0.235 1.604 1 19 A 21 A 128 -4.928 A_C21:G128_A 14 -6.103 0.131 0.138 -0.205 -15.750 1 19 A 22 A 127 -6.003 A_G22:C127_A 15 -6.510 -0.029 -0.543 -0.058 0.194 1 19 A 23 A 126 5.473 A_C23:G126_A 16 -4.768 0.309 -0.065 -0.100 -0.224 1 20 A 24 A 125 -7.899 A_U24:A125_A 17 -6.077 0.070 -0.087 0.017 11.216 1 20 A 25 A 124 -3.915 A_A25:U124_A 18 -6.434 0.173 1.316 -0.272 4.662 1 19 A 26 A 123 0.054 A_C26:G123_A 19 -9.380 0.249 0.633 -0.183 3.185 1 20 A 27 A 122 -1.601 A_A27:U122_A 20 -12.193 0.042 0.401 -0.177 3.876 1 16 A 28 A 121 2.998 A_U28:U121_A 21 -16.204 3.214 0.090 -1.827 -8.385 1 19 A 29 A 72 0.297 A_C29:G72_A 22 -0.537 0.190 -0.049 -0.109 -1.460 1 20 A 30 A 71 4.301 A_U30:A71_A 23 0.972 0.012 0.260 -0.083 5.198 1 19 A 31 A 70 4.017 A_C31:G70_A 24 3.649 0.252 0.158 -0.138 -4.391 1 19 A 32 A 69 0.597 A_C32:G69_A 25 0.672 0.162 -0.088 -0.126 5.466 1 19 A 33 A 68 -1.234 A_C33:G68_A 26 6.193 0.195 0.381 -0.178 29.972 1 16 A 34 A 67 7.131 A_U34:U67_A 27 1.123 2.203 0.618 -2.304 5.986 10 A 35 A 66 -18.969 A_A35:A66_A 28 10.001 -5.953 -0.799 -3.929 10.220 1 19 A 36 A 65 3.601 A_C36:G65_A 29 -6.271 0.249 -0.935 -0.257 -16.156 1 19 A 37 A 64 -0.119 A_G37:C64_A 30 -5.533 -0.105 -1.454 -0.397 -8.544 1 20 A 38 A 63 -5.360 A_A38:U63_A 31 12.610 0.182 -2.225 -0.917 3.427 42.734 A A 14 15 3.545 A A 92 91 3.457 2.580 0.642 -0.907 AA_A14C15:G91U92_AA 1 2.281 -3.133 42.601 -1.516 -0.640 3.155 30.351 A A 15 16 4.754 A A 91 90 3.235 2.486 -0.310 -0.973 AA_C15U16:A90G91_AA 2 -1.036 1.981 30.234 -2.348 0.388 3.188 36.808 A A 16 74 11.595 A A 90 89 3.508 7.276 0.241 -1.345 AA_U16C74:G89A90_AA 3 0.217 -0.346 36.106 -3.153 -0.351 1.769 34.990 A A 74 75 22.852 A A 89 88 2.927 13.408 -0.804 -2.523 AA_C74C75:G88G89_AA 4 0.243 -0.413 32.392 -5.708 1.365 2.426 35.758 A A 75 76 15.402 A A 88 87 3.052 9.353 -0.700 -1.993 AA_C75A76:U87G88_AA 5 1.042 -1.716 34.537 -4.396 1.268 2.856 27.862 A A 76 77 14.230 A A 87 86 3.242 6.764 -0.246 -1.238 AA_A76C77:G86U87_AA 6 -3.819 8.034 26.777 -4.110 -0.357 1.911 39.064 A A 77 78 29.265 A A 86 85 2.868 18.737 -0.028 -1.281 AA_C77A78:U85G86_AA 7 -5.943 9.283 33.925 -3.693 -0.521 3.456 33.056 A A 78 79 -0.090 A A 85 84 3.329 -0.051 -1.029 -1.628 AA_A78C79:G84U85_AA 8 -5.568 9.830 32.596 -2.853 0.825 3.372 34.927 A A 17 18 3.838 A A 120 119 3.386 2.298 -0.899 -1.295 AA_G17U18:A119C120_AA 9 -3.786 6.324 34.653 -2.518 0.904 2.992 32.925 A A 18 19 10.835 A A 119 118 3.232 6.105 0.192 -0.969 AA_U18U19:A118A119_AA 10 -1.511 2.682 32.335 -2.709 -0.587 2.706 39.424 A A 20 21 13.451 A A 129 128 3.193 8.994 -0.163 -1.786 AA_G20C21:G128C129_AA 11 2.601 -3.890 38.339 -3.620 0.523 2.048 31.397 A A 21 22 30.133 A A 128 127 3.849 15.480 -0.166 -2.445 AA_C21G22:C127G128_AA 12 6.799 -13.235 26.552 -7.373 1.560 2.840 29.678 A A 22 23 6.357 A A 127 126 3.022 3.248 0.657 -1.148 AA_G22C23:G126C127_AA 13 -1.738 3.401 29.453 -2.855 -1.611 2.470 29.377 A A 23 24 18.469 A A 126 125 3.367 9.214 -1.323 -2.264 AA_C23U24:A125G126_AA 14 0.817 -1.638 27.913 -6.277 2.770 2.511 28.643 A A 24 25 6.492 A A 125 124 2.864 3.151 -0.067 -1.949 AA_U24A25:U124A125_AA 15 -9.178 18.912 26.981 -4.543 -1.623 3.578 37.979 A A 25 26 1.082 A A 124 123 3.621 0.702 0.145 -1.679 AA_A25C26:G123U124_AA 16 5.143 -7.926 37.636 -2.679 0.503 2.588 22.810 A A 26 27 15.100 A A 123 122 3.306 5.906 0.316 -2.363 AA_C26A27:U122G123_AA 17 -0.238 0.608 22.041 -7.912 -0.877 3.722 44.633 A A 27 28 -2.043 A A 122 121 3.665 -1.551 0.218 -1.653 AA_A27U28:U121U122_AA 18 1.278 -1.684 44.590 -2.016 -0.154 4.892 -6.476 A A 28 29 -53.956 A A 121 72 3.669 5.202 -3.674 -4.210 AA_U28C29:G72U121_AA 19 -1.046 -10.852 -3.714 -1.406 -40.301 2.913 26.900 A A 29 30 8.724 A A 72 71 3.319 4.014 0.015 -2.012 AA_C29U30:A71G72_AA 20 -5.646 12.270 26.008 -5.325 -1.438 2.823 29.437 A A 30 31 8.905 A A 71 70 3.121 4.507 -0.113 -1.767 AA_U30C31:G70A71_AA 21 -1.121 2.216 29.076 -4.359 0.002 2.186 38.334 A A 31 32 23.012 A A 70 69 3.208 14.726 -0.131 -2.057 AA_C31C32:G69G70_AA 22 3.701 -5.783 35.303 -4.721 0.599 2.780 29.666 A A 32 33 4.624 A A 69 68 2.862 2.355 -0.671 -1.861 AA_C32C33:G68G69_AA 23 -4.872 9.567 29.179 -4.067 0.417 2.127 41.011 A A 33 34 9.393 A A 68 67 2.379 6.540 -0.035 -1.390 AA_C33U34:U67G68_AA 24 -4.893 7.027 40.223 -2.480 -0.322 2.487 -12.905 A A 34 35 -58.788 A A 67 66 3.926 9.741 -1.391 -3.084 AA_U34A35:A66U67_AA 25 -7.804 -47.097 -3.282 -3.438 -19.936 3.170 61.588 A A 35 36 2.874 A A 66 65 3.218 2.941 0.898 -1.263 AA_A35C36:G65A66_AA 26 0.729 -0.712 61.521 -1.368 -0.844 2.496 38.584 A A 36 37 37.613 A A 65 64 4.139 23.196 -0.992 -1.184 AA_C36G37:C64G65_AA 27 4.883 -7.918 30.666 -5.063 2.190 3.492 32.357 A A 37 38 17.771 A A 64 63 3.746 9.752 -1.331 -0.527 AA_G37A38:U63C64_AA 28 -1.799 3.278 30.839 -2.900 2.027 repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release 1 0 2026-03-04 1 0 2026-03-04 1 0 1 2026-03-04 1 0 1 2026-03-04 1 0 2 2026-03-04 1 0 2026-03-04 1 0 1 2026-03-04 1 0 2026-03-04 United States National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) adrian.ferre@nih.gov 0000-0003-4549-1619 Ferre-D'Amare Adrian R principal investigator/group leader RNA scaffold attached to Mango in the absence of ligand N RCSB Y RCSB 2025-02-12 REL K POTASSIUM ION HOH water 32630 synthetic construct sample 1 129 N N K 1 2 K K 201 A HOH 2 3 HOH HOH 301 A HOH 11 3 HOH HOH 302 A HOH 4 3 HOH HOH 303 A HOH 1 3 HOH HOH 304 A HOH 3 3 HOH HOH 305 A HOH 5 3 HOH HOH 306 A HOH 10 3 HOH HOH 307 A HOH 6 3 HOH HOH 308 A HOH 8 3 HOH HOH 309 A HOH 9 3 HOH HOH 310 A HOH 7 3 HOH HOH 311 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A A 14 n 14 A 14 A C 15 n 15 C 15 A U 16 n 16 U 16 A G 17 n 17 G 17 A U 18 n 18 U 18 A U 19 n 19 U 19 A G 20 n 20 G 20 A C 21 n 21 C 21 A G 22 n 22 G 22 A C 23 n 23 C 23 A U 24 n 24 U 24 A A 25 n 25 A 25 A C 26 n 26 C 26 A A 27 n 27 A 27 A U 28 n 28 U 28 A C 29 n 29 C 29 A U 30 n 30 U 30 A C 31 n 31 C 31 A C 32 n 32 C 32 A C 33 n 33 C 33 A U 34 n 34 U 34 A A 35 n 35 A 35 A C 36 n 36 C 36 A G 37 n 37 G 37 A A 38 n 38 A 38 A n 39 39 A n 40 40 A n 41 41 A n 42 42 A n 43 43 A n 44 44 A n 45 45 A n 46 46 A n 47 47 A n 48 48 A n 49 49 A n 50 50 A n 51 51 A n 52 52 A n 53 53 A n 54 54 A n 55 55 A n 56 56 A n 57 57 A n 58 58 A n 59 59 A n 60 60 A n 61 61 A n 62 62 A U 63 n 63 U 63 A C 64 n 64 C 64 A G 65 n 65 G 65 A A 66 n 66 A 66 A U 67 n 67 U 67 A G 68 n 68 G 68 A G 69 n 69 G 69 A G 70 n 70 G 70 A A 71 n 71 A 71 A G 72 n 72 G 72 A G 73 n 73 G 73 A C 74 n 74 C 74 A C 75 n 75 C 75 A A 76 n 76 A 76 A C 77 n 77 C 77 A A 78 n 78 A 78 A C 79 n 79 C 79 A G 80 n 80 G 80 A A 81 n 81 A 81 A A 82 n 82 A 82 A A 83 n 83 A 83 A G 84 n 84 G 84 A U 85 n 85 U 85 A G 86 n 86 G 86 A U 87 n 87 U 87 A G 88 n 88 G 88 A G 89 n 89 G 89 A A 90 n 90 A 90 A G 91 n 91 G 91 A U 92 n 92 U 92 A n 93 93 A n 94 94 A n 95 95 A n 96 96 A n 97 97 A n 98 98 A n 99 99 A n 100 100 A n 101 101 A n 102 102 A n 103 103 A n 104 104 A n 105 105 A n 106 106 A n 107 107 A n 108 108 A n 109 109 A n 110 110 A n 111 111 A n 112 112 A n 113 113 A n 114 114 A n 115 115 A n 116 116 A A 117 n 117 A 117 A A 118 n 118 A 118 A A 119 n 119 A 119 A C 120 n 120 C 120 A U 121 n 121 U 121 A U 122 n 122 U 122 A G 123 n 123 G 123 A U 124 n 124 U 124 A A 125 n 125 A 125 A G 126 n 126 G 126 A C 127 n 127 C 127 A G 128 n 128 G 128 A C 129 n 129 C 129 A author_and_software_defined_assembly 1 monomeric not applicable electron microscopy 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 1.0 1_555 x,y,z identity operation 0.0 0.0 0.0 1 A G 1 A G 1 1 Y 1 A G 2 A G 2 1 Y 1 A G 3 A G 3 1 Y 1 A C 4 A C 4 1 Y 1 A C 5 A C 5 1 Y 1 A A 6 A A 6 1 Y 1 A C 7 A C 7 1 Y 1 A U 8 A U 8 1 Y 1 A G 9 A G 9 1 Y 1 A U 10 A U 10 1 Y 1 A U 11 A U 11 1 Y 1 A U 12 A U 12 1 Y 1 A C 13 A C 13 1 Y 1 A A 39 A A 39 1 Y 1 A G 40 A G 40 1 Y 1 A G 41 A G 41 1 Y 1 A A 42 A A 42 1 Y 1 A A 43 A A 43 1 Y 1 A G 44 A G 44 1 Y 1 A G 45 A G 45 1 Y 1 A U 46 A U 46 1 Y 1 A U 47 A U 47 1 Y 1 A U 48 A U 48 1 Y 1 A G 49 A G 49 1 Y 1 A G 50 A G 50 1 Y 1 A U 51 A U 51 1 Y 1 A A 52 A A 52 1 Y 1 A U 53 A U 53 1 Y 1 A G 54 A G 54 1 Y 1 A U 55 A U 55 1 Y 1 A G 56 A G 56 1 Y 1 A G 57 A G 57 1 Y 1 A U 58 A U 58 1 Y 1 A A 59 A A 59 1 Y 1 A U 60 A U 60 1 Y 1 A A 61 A A 61 1 Y 1 A U 62 A U 62 1 Y 1 A G 93 A G 93 1 Y 1 A A 94 A A 94 1 Y 1 A C 95 A C 95 1 Y 1 A C 96 A C 96 1 Y 1 A A 97 A A 97 1 Y 1 A G 98 A G 98 1 Y 1 A U 99 A U 99 1 Y 1 A G 100 A G 100 1 Y 1 A G 101 A G 101 1 Y 1 A C 102 A C 102 1 Y 1 A C 103 A C 103 1 Y 1 A C 104 A C 104 1 Y 1 A C 105 A C 105 1 Y 1 A A 106 A A 106 1 Y 1 A C 107 A C 107 1 Y 1 A C 108 A C 108 1 Y 1 A C 109 A C 109 1 Y 1 A U 110 A U 110 1 Y 1 A G 111 A G 111 1 Y 1 A A 112 A A 112 1 Y 1 A A 113 A A 113 1 Y 1 A G 114 A G 114 1 Y 1 A G 115 A G 115 1 Y 1 A U 116 A U 116 1 Y 1 -3.20 0.50 128.60 125.40 A A A N3 C4 C5 G G G 91 91 91 N 1 4.45 0.60 126.00 130.45 A A A N3 C4 N9 G G G 91 91 91 N 2.87 REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS) 0.006 1620 1.012 2518 17.816 807 0.051 340 0.005 68 N RNA scaffold attached to Mango in the absence of ligand 1 N N 2 N N 3 N N metalc 3.291 A K 201 B K K 1_555 A HOH 311 C O HOH 1_555 hydrog WATSON-CRICK A A 14 A N1 A 14 1_555 A U 92 A N3 U 92 1_555 hydrog WATSON-CRICK A A 14 A N6 A 14 1_555 A U 92 A O4 U 92 1_555 hydrog WATSON-CRICK A C 15 A N3 C 15 1_555 A G 91 A N1 G 91 1_555 hydrog WATSON-CRICK A C 15 A N4 C 15 1_555 A G 91 A O6 G 91 1_555 hydrog WATSON-CRICK A C 15 A O2 C 15 1_555 A G 91 A N2 G 91 1_555 hydrog WATSON-CRICK A U 16 A N3 U 16 1_555 A A 90 A N1 A 90 1_555 hydrog WATSON-CRICK A U 16 A O4 U 16 1_555 A A 90 A N6 A 90 1_555 hydrog WATSON-CRICK A G 17 A N1 G 17 1_555 A C 120 A N3 C 120 1_555 hydrog WATSON-CRICK A G 17 A N2 G 17 1_555 A C 120 A O2 C 120 1_555 hydrog WATSON-CRICK A G 17 A O6 G 17 1_555 A C 120 A N4 C 120 1_555 hydrog WATSON-CRICK A U 18 A N3 U 18 1_555 A A 119 A N1 A 119 1_555 hydrog WATSON-CRICK A U 18 A O4 U 18 1_555 A A 119 A N6 A 119 1_555 hydrog WATSON-CRICK A U 19 A N3 U 19 1_555 A A 118 A N1 A 118 1_555 hydrog WATSON-CRICK A U 19 A O4 U 19 1_555 A A 118 A N6 A 118 1_555 hydrog WATSON-CRICK A G 20 A N1 G 20 1_555 A C 129 A N3 C 129 1_555 hydrog WATSON-CRICK A G 20 A N2 G 20 1_555 A C 129 A O2 C 129 1_555 hydrog WATSON-CRICK A G 20 A O6 G 20 1_555 A C 129 A N4 C 129 1_555 hydrog WATSON-CRICK A C 21 A N3 C 21 1_555 A G 128 A N1 G 128 1_555 hydrog WATSON-CRICK A C 21 A N4 C 21 1_555 A G 128 A O6 G 128 1_555 hydrog WATSON-CRICK A C 21 A O2 C 21 1_555 A G 128 A N2 G 128 1_555 hydrog WATSON-CRICK A G 22 A N1 G 22 1_555 A C 127 A N3 C 127 1_555 hydrog WATSON-CRICK A G 22 A N2 G 22 1_555 A C 127 A O2 C 127 1_555 hydrog WATSON-CRICK A G 22 A O6 G 22 1_555 A C 127 A N4 C 127 1_555 hydrog WATSON-CRICK A C 23 A N3 C 23 1_555 A G 126 A N1 G 126 1_555 hydrog WATSON-CRICK A C 23 A N4 C 23 1_555 A G 126 A O6 G 126 1_555 hydrog WATSON-CRICK A C 23 A O2 C 23 1_555 A G 126 A N2 G 126 1_555 hydrog WATSON-CRICK A U 24 A N3 U 24 1_555 A A 125 A N1 A 125 1_555 hydrog WATSON-CRICK A U 24 A O4 U 24 1_555 A A 125 A N6 A 125 1_555 hydrog WATSON-CRICK A A 25 A N1 A 25 1_555 A U 124 A N3 U 124 1_555 hydrog WATSON-CRICK A A 25 A N6 A 25 1_555 A U 124 A O4 U 124 1_555 hydrog WATSON-CRICK A C 26 A N3 C 26 1_555 A G 123 A N1 G 123 1_555 hydrog WATSON-CRICK A C 26 A N4 C 26 1_555 A G 123 A O6 G 123 1_555 hydrog WATSON-CRICK A C 26 A O2 C 26 1_555 A G 123 A N2 G 123 1_555 hydrog WATSON-CRICK A A 27 A N1 A 27 1_555 A U 122 A N3 U 122 1_555 hydrog WATSON-CRICK A A 27 A N6 A 27 1_555 A U 122 A O4 U 122 1_555 hydrog TYPE_16_PAIR A U 28 A N3 U 28 1_555 A U 121 A O4 U 121 1_555 hydrog TYPE_16_PAIR A U 28 A O2 U 28 1_555 A U 121 A N3 U 121 1_555 hydrog WATSON-CRICK A C 29 A N3 C 29 1_555 A G 72 A N1 G 72 1_555 hydrog WATSON-CRICK A C 29 A N4 C 29 1_555 A G 72 A O6 G 72 1_555 hydrog WATSON-CRICK A C 29 A O2 C 29 1_555 A G 72 A N2 G 72 1_555 hydrog WATSON-CRICK A U 30 A N3 U 30 1_555 A A 71 A N1 A 71 1_555 hydrog WATSON-CRICK A U 30 A O4 U 30 1_555 A A 71 A N6 A 71 1_555 hydrog WATSON-CRICK A C 31 A N3 C 31 1_555 A G 70 A N1 G 70 1_555 hydrog WATSON-CRICK A C 31 A N4 C 31 1_555 A G 70 A O6 G 70 1_555 hydrog WATSON-CRICK A C 31 A O2 C 31 1_555 A G 70 A N2 G 70 1_555 hydrog WATSON-CRICK A C 32 A N3 C 32 1_555 A G 69 A N1 G 69 1_555 hydrog WATSON-CRICK A C 32 A N4 C 32 1_555 A G 69 A O6 G 69 1_555 hydrog WATSON-CRICK A C 32 A O2 C 32 1_555 A G 69 A N2 G 69 1_555 hydrog WATSON-CRICK A C 33 A N3 C 33 1_555 A G 68 A N1 G 68 1_555 hydrog WATSON-CRICK A C 33 A N4 C 33 1_555 A G 68 A O6 G 68 1_555 hydrog WATSON-CRICK A C 33 A O2 C 33 1_555 A G 68 A N2 G 68 1_555 hydrog TYPE_16_PAIR A U 34 A N3 U 34 1_555 A U 67 A O4 U 67 1_555 hydrog TYPE_16_PAIR A U 34 A O2 U 34 1_555 A U 67 A N3 U 67 1_555 hydrog A-A MISPAIR A A 35 A N6 A 35 1_555 A A 66 A N3 A 66 1_555 hydrog WATSON-CRICK A C 36 A N3 C 36 1_555 A G 65 A N1 G 65 1_555 hydrog WATSON-CRICK A C 36 A N4 C 36 1_555 A G 65 A O6 G 65 1_555 hydrog WATSON-CRICK A C 36 A O2 C 36 1_555 A G 65 A N2 G 65 1_555 hydrog WATSON-CRICK A G 37 A N1 G 37 1_555 A C 64 A N3 C 64 1_555 hydrog WATSON-CRICK A G 37 A N2 G 37 1_555 A C 64 A O2 C 64 1_555 hydrog WATSON-CRICK A G 37 A O6 G 37 1_555 A C 64 A N4 C 64 1_555 hydrog WATSON-CRICK A A 38 A N1 A 38 1_555 A U 63 A N3 U 63 1_555 hydrog WATSON-CRICK A A 38 A N6 A 38 1_555 A U 63 A O4 U 63 1_555 hydrog WATSON-CRICK A C 74 A N3 C 74 1_555 A G 89 A N1 G 89 1_555 hydrog WATSON-CRICK A C 74 A N4 C 74 1_555 A G 89 A O6 G 89 1_555 hydrog WATSON-CRICK A C 74 A O2 C 74 1_555 A G 89 A N2 G 89 1_555 hydrog WATSON-CRICK A C 75 A N3 C 75 1_555 A G 88 A N1 G 88 1_555 hydrog WATSON-CRICK A C 75 A N4 C 75 1_555 A G 88 A O6 G 88 1_555 hydrog WATSON-CRICK A C 75 A O2 C 75 1_555 A G 88 A N2 G 88 1_555 hydrog WATSON-CRICK A A 76 A N1 A 76 1_555 A U 87 A N3 U 87 1_555 hydrog WATSON-CRICK A A 76 A N6 A 76 1_555 A U 87 A O4 U 87 1_555 hydrog WATSON-CRICK A C 77 A N3 C 77 1_555 A G 86 A N1 G 86 1_555 hydrog WATSON-CRICK A C 77 A N4 C 77 1_555 A G 86 A O6 G 86 1_555 hydrog WATSON-CRICK A C 77 A O2 C 77 1_555 A G 86 A N2 G 86 1_555 hydrog WATSON-CRICK A A 78 A N1 A 78 1_555 A U 85 A N3 U 85 1_555 hydrog WATSON-CRICK A A 78 A N6 A 78 1_555 A U 85 A O4 U 85 1_555 hydrog WATSON-CRICK A C 79 A N3 C 79 1_555 A G 84 A N1 G 84 1_555 hydrog WATSON-CRICK A C 79 A N4 C 79 1_555 A G 84 A O6 G 84 1_555 hydrog WATSON-CRICK A C 79 A O2 C 79 1_555 A G 84 A N2 G 84 1_555 RNA viral RNA, scaffold, engineering, RNA 9NAM PDB 1 1 9NAM 1 129 9NAM 1 129 9NAM A 1 1 129 1 P 1