1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0001-7780-5278 Jones, C.P. 0000-0003-4549-1619 Ferre-D'Amare, A.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 90.00 90.00 90.00 1.00 1.00 1.00 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N H N 113 N H N 114 N K N 115 N MG N 116 N O N 117 N P N 118 N O N 119 N O N 120 N O N 121 N C N 122 R C N 123 N O N 124 S C N 125 N O N 126 R C N 127 N O N 128 R C N 129 N N N 130 N C N 131 N O N 132 N N N 133 N C N 134 N O N 135 N C N 136 N C N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N doub N 151 N sing N 152 N sing To Be Published 0353 Symmetric scaffolds enable de novo modelling of RNA by cryoEM 0000-0001-7780-5278 0000-0003-4549-1619 10.2210/pdb9nak/pdb pdb_00009nak 9NAK 646397 3.67 FSC 0.143 CUT-OFF POINT REL 2025-02-12 RCSB 2026-03-04 2026-03-04 RNA scaffold attached to tRNA 7.4 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 1 Scaffold RNA attached to tRNA 0 RECOMBINANT COMPLEX 32644 unidentified 905931 in vitro transcription vector pT7-TP(deltai) PARTICLE 1 1 SINGLE PARTICLE 60 GATAN K3 BIOQUANTUM (6k x 4k) 300 FIELD EMISSION GUN SPOT SCAN TFS KRIOS BRIGHT FIELD 2500 500 1 PARTICLE SELECTION 1 MODEL REFINEMENT PHENIX 1.19.2_4158 IMAGE ACQUISITION 1 MASKING CTF CORRECTION 1 LAYERLINE INDEXING DIFFRACTION INDEXING MODEL FITTING OTHER INITIAL EULER ASSIGNMENT 1 FINAL EULER ASSIGNMENT 1 CLASSIFICATION 1 RECONSTRUCTION 1 VOLUME SELECTION 1 1 1 SERIES ALIGNMENT 1 1 1 MOLECULAR REPLACEMENT 1 1 1 LATTICE DISTORTION CORRECTION 1 1 1 SYMMETRY DETERMINATION 1 1 1 CRYSTALLOGRAPHY MERGING 1 1 1 NO NO NO YES 277 ETHANE 9NAK 100 FEI VITROBOT MARK IV 54183.059 Scaffold attached to tRNA 2 syn polymer 24.305 MAGNESIUM ION 3 syn non-polymer 39.098 POTASSIUM ION 1 syn non-polymer 18.015 water 26 nat water no no GGGCCACUGUUUCACUGUUGCGCUACAUCUGGCGGAGCGGUAGUUCAGUCGGUUAGAAUACCUGCCUGUCACGCAGGGGG UCGCGGGUUCGAGUCCCGUCCGUUCGGCCAGGCCACACGAAAGUGUGGAGUGACCAGUGGCCCCACCCUGAAGGUAAACU UGUAGCGC GGGCCACUGUUUCACUGUUGCGCUACAUCUGGCGGAGCGGUAGUUCAGUCGGUUAGAAUACCUGCCUGUCACGCAGGGGG UCGCGGGUUCGAGUCCCGUCCGUUCGGCCAGGCCACACGAAAGUGUGGAGUGACCAGUGGCCCCACCCUGAAGGUAAACU UGUAGCGC A,C polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n -11.615 1 19 A 1 A 143 -5.134 A_G1:C143_A 1 3.761 -0.033 -1.224 -0.370 -6.763 1 19 A 2 A 142 -2.786 A_G2:C142_A 2 2.143 -0.145 -0.139 -0.216 1.557 1 19 A 3 A 141 -1.106 A_G3:C141_A 3 6.447 -0.187 0.507 -0.202 5.410 1 19 A 4 A 140 0.490 A_C4:G140_A 4 -0.318 0.184 0.738 -0.231 -0.719 1 19 A 5 A 139 -0.689 A_C5:G139_A 5 1.431 0.174 -0.212 -0.048 1.307 1 20 A 6 A 138 -0.236 A_A6:U138_A 6 7.171 0.153 -0.182 -0.058 9.639 1 19 A 7 A 137 -2.382 A_C7:G137_A 7 6.836 0.162 -0.406 -0.195 1.159 1 20 A 8 A 136 0.394 A_U8:A136_A 8 6.677 -0.256 -0.935 -0.198 14.031 1 19 A 9 A 135 -0.158 A_G9:C135_A 9 5.618 -0.053 0.823 -0.036 15.650 1 18 A 11 A 134 1.490 A_U11:C134_A 10 7.423 -1.172 2.121 -2.640 9.085 1 A 12 A 133 19.984 A_U12:A133_A 11 -4.960 1.171 0.961 0.088 9.432 1 19 A 13 A 132 0.658 A_C13:G132_A 12 1.700 0.223 0.191 -0.108 2.251 1 20 A 14 A 131 3.716 A_A14:U131_A 13 -7.442 0.075 0.275 -0.149 -2.457 1 19 A 15 A 130 -12.017 A_C15:G130_A 14 -9.454 0.244 0.164 0.065 -0.259 1 20 A 16 A 129 -3.821 A_U16:A129_A 15 -6.845 -0.226 0.715 -0.099 4.248 1 19 A 113 A 128 0.048 A_C113:G128_A 16 0.392 0.157 -0.118 -0.109 -0.308 1 19 A 114 A 127 -1.528 A_C114:G127_A 17 -5.675 0.191 -0.057 -0.155 0.297 1 20 A 115 A 126 -4.120 A_A115:U126_A 18 5.124 0.033 0.078 -0.161 4.085 1 19 A 116 A 125 3.188 A_C116:G125_A 19 4.381 0.190 0.276 -0.138 -8.022 1 20 A 117 A 124 1.565 A_A117:U124_A 20 -2.589 0.086 -1.172 -0.238 2.000 1 19 A 118 A 123 -2.361 A_C118:G123_A 21 2.284 0.124 -0.957 -0.312 -10.895 1 19 A 17 A 159 2.575 A_G17:C159_A 22 -9.960 -0.218 -0.350 -0.053 0.955 1 20 A 18 A 158 -5.614 A_U18:A158_A 23 -11.044 -0.210 -1.155 -0.178 1.909 A 19 A 157 1.843 A_U19:A157_A 24 -22.886 -1.051 0.486 0.695 -18.344 A 72 A 66 -52.671 A_C72:C66_A 25 3.213 -2.491 -0.386 -0.847 -6.278 1 19 A 73 A 65 1.402 A_G73:C65_A 26 7.578 -0.139 -0.488 -0.079 -1.763 1 19 A 74 A 64 -1.043 A_C74:G64_A 27 7.142 0.169 -0.224 -0.296 -4.837 1 20 A 75 A 63 2.657 A_A75:U63_A 28 -2.587 0.110 -0.029 -0.269 -2.765 1 19 A 76 A 62 -1.567 A_G76:C62_A 29 2.224 -0.160 -0.456 -0.272 -5.325 1 19 A 77 A 61 0.754 A_G77:C61_A 30 1.295 -0.176 -0.415 -0.138 -1.943 1 8 A 78 A 60 -22.797 A_G78:A60_A 31 2.498 2.013 -0.501 0.820 -20.305 1 28 A 43 A 59 -7.560 A_G43:U59_A 32 -2.971 -2.841 -1.927 -1.065 -4.413 1 20 A 44 A 58 -8.577 A_U44:A58_A 33 7.143 -0.162 -1.234 -0.369 1.555 1 20 A 45 A 57 -7.385 A_U45:A57_A 34 8.429 -0.118 -0.775 -0.110 0.168 1 19 A 46 A 56 1.625 A_C46:G56_A 35 -0.382 0.148 -0.137 -0.207 0.399 4 24 A 47 A 41 -97.624 A_A47:U41_A 36 1.648 -3.981 -0.211 -1.726 -5.343 2 22 A 48 A 82 178.767 A_G48:C82_A 37 7.191 0.787 1.479 4.665 -22.845 2 A 51 A 89 82.574 A_G51:U89_A 38 -9.053 0.360 -1.320 5.159 -2.749 4 24 A 92 A 88 -88.492 A_A92:U88_A 39 16.501 -4.613 0.844 -3.669 12.041 1 19 A 95 A 87 0.351 A_C95:G87_A 40 -1.618 0.111 -0.817 -0.225 -1.815 1 19 A 96 A 86 -0.559 A_C96:G86_A 41 5.039 0.159 -0.411 -0.191 3.029 1 19 A 97 A 85 0.456 A_C97:G85_A 42 1.389 0.146 -0.348 -0.165 -1.534 1 19 A 98 A 84 1.275 A_G98:C84_A 43 -1.228 -0.188 0.099 -0.133 -0.337 1 28 A 99 A 83 -9.380 A_U99:G83_A 44 1.591 1.665 -0.073 -0.501 0.275 1 19 A 100 A 40 -0.316 A_C100:G40_A 45 -2.742 0.193 -0.187 -0.142 8.161 1 19 A 101 A 39 0.735 A_C101:G39_A 46 -8.997 0.253 -0.535 -0.128 -3.851 1 19 A 102 A 38 2.136 A_G102:C38_A 47 5.877 -0.214 -0.190 -0.134 2.213 1 28 A 103 A 37 4.246 A_U103:G37_A 48 4.580 1.434 -0.432 -0.306 1.505 1 20 A 104 A 36 -0.478 A_U104:A36_A 49 2.281 -0.112 -0.612 -0.162 7.258 1 19 A 105 A 35 -1.945 A_C105:G35_A 50 -0.970 0.190 -0.553 -0.200 -5.659 A 106 A 34 52.128 A_G106:G34_A 51 -8.634 4.287 -0.419 1.916 -2.367 1 19 A 107 A 33 1.466 A_G107:C33_A 52 5.797 -0.173 0.265 -0.129 3.448 1 19 A 108 A 32 1.292 A_C108:G32_A 53 2.858 0.179 0.338 -0.188 3.543 1 19 A 109 A 31 0.511 A_C109:G31_A 54 -1.173 0.204 0.163 -0.085 1.175 1 20 A 110 A 30 0.652 A_A110:U30_A 55 2.806 0.104 -0.329 0.022 9.229 1 19 A 111 A 29 1.951 A_G111:C29_A 56 1.532 -0.240 -0.332 -0.122 5.263 1 16 A 160 A 28 14.431 A_U160:U28_A 57 -5.183 -2.818 0.798 -1.904 -5.624 1 20 A 161 A 27 11.314 A_U161:A27_A 58 5.465 -0.612 0.498 0.316 -6.113 1 19 A 162 A 26 0.082 A_G162:C26_A 59 5.179 -0.147 0.126 -0.146 0.425 1 20 A 163 A 25 -2.318 A_U163:A25_A 60 4.320 -0.268 0.324 -0.034 3.856 1 20 A 164 A 24 -1.253 A_A164:U24_A 61 -2.287 0.081 0.208 0.007 -2.448 1 19 A 165 A 23 4.863 A_G165:C23_A 62 5.338 -0.240 0.869 -0.258 1.276 1 19 A 166 A 22 -1.931 A_C166:G22_A 63 -2.085 0.243 0.416 -0.108 -0.886 1 19 A 167 A 21 1.358 A_G167:C21_A 64 -2.454 -0.102 -0.688 -0.114 4.230 1 19 A 168 A 20 1.476 A_C168:G20_A 65 -2.464 0.167 -0.609 -0.151 -5.720 1 19 C 1 C 143 0.401 C_G1:C143_C 66 -3.473 -0.215 -1.071 -0.272 -12.946 1 19 C 2 C 142 -4.387 C_G2:C142_C 67 1.337 -0.116 -0.932 -0.198 -0.190 1 19 C 3 C 141 -2.997 C_G3:C141_C 68 -1.645 -0.218 0.605 -0.278 -2.052 1 19 C 4 C 140 -0.291 C_C4:G140_C 69 -2.123 0.103 1.351 -0.439 -8.176 1 19 A 52 A 90 1.847 A_G52:C90_A 70 -6.781 -0.171 0.108 -0.149 2.268 37.000 A A 1 2 16.800 A A 143 142 2.907 10.476 1.360 -0.972 AA_G1G2:C142C143_AA 1 -6.184 9.916 35.009 -2.680 -2.820 2.802 43.024 A A 2 3 1.256 A A 142 141 2.868 0.919 0.268 -1.053 AA_G2G3:C141C142_AA 2 -4.726 6.457 42.766 -1.515 -0.772 3.081 38.071 A A 3 4 -1.498 A A 141 140 3.057 -0.976 0.220 -2.180 AA_G3C4:G140C141_AA 3 -3.228 4.954 37.927 -3.226 -0.723 3.260 36.383 A A 4 5 -0.469 A A 140 139 3.226 -0.291 0.450 -1.698 AA_C4C5:G139G140_AA 4 8.087 -13.053 35.502 -2.679 0.411 2.416 30.433 A A 5 6 16.704 A A 139 138 2.896 8.653 -0.245 -1.328 AA_C5A6:U138G139_AA 5 -0.553 1.068 29.200 -3.965 0.375 2.863 31.088 A A 6 7 1.818 A A 138 137 2.913 0.974 0.018 -1.457 AA_A6C7:G137U138_AA 6 1.873 -3.497 31.018 -2.884 0.283 1.759 43.073 A A 7 8 35.245 A A 137 136 3.103 24.387 -0.040 -1.465 AA_C7U8:A136G137_AA 7 5.549 -8.020 35.353 -3.981 0.506 2.555 27.534 A A 8 9 4.687 A A 136 135 2.975 2.180 0.201 -1.873 AA_U8G9:C135A136_AA 8 -9.927 21.343 25.623 -4.403 -2.554 3.000 44.224 A A 9 11 18.343 A A 135 134 4.089 13.594 -1.496 -2.680 AA_G9U11:C134C135_AA 9 3.448 -4.653 42.048 -4.974 2.346 3.422 51.190 A A 11 12 -0.706 A A 134 133 3.388 -0.608 0.405 -1.079 AA_U11U12:A133C134_AA 10 8.226 -9.557 50.565 -1.205 0.127 2.458 24.835 A A 12 13 8.529 A A 133 132 2.893 3.628 -0.651 -1.419 AA_U12C13:G132A133_AA 11 5.273 -12.396 24.008 -4.211 2.837 2.973 30.319 A A 13 14 7.680 A A 132 131 3.195 4.005 0.320 -1.575 AA_C13A14:U131G132_AA 12 0.820 -1.572 30.049 -3.775 -0.456 3.151 36.841 A A 14 15 1.469 A A 131 130 3.247 0.927 -0.533 -1.731 AA_A14C15:G130U131_AA 13 3.081 -4.881 36.705 -2.862 1.252 2.904 30.108 A A 15 16 7.197 A A 130 129 3.124 3.724 0.268 -1.293 AA_C15U16:A129G130_AA 14 -2.967 5.736 29.738 -3.194 -1.078 2.654 37.817 A A 16 113 5.161 A A 129 128 2.888 3.325 -0.120 -1.904 AA_U16C113:G128A129_AA 15 6.603 -10.249 37.113 -3.304 0.912 3.044 38.085 A A 113 114 6.765 A A 128 127 3.259 4.400 0.113 -1.719 AA_C113C114:G127G128_AA 16 3.557 -5.469 37.677 -3.174 0.264 2.270 33.329 A A 114 115 20.828 A A 127 126 2.845 11.696 -0.820 -1.311 AA_C114A115:U126G127_AA 17 -2.154 3.835 31.191 -3.861 1.140 2.691 28.780 A A 115 116 9.243 A A 126 125 3.064 4.575 0.750 -2.002 AA_A115C116:G125U126_AA 18 -0.900 1.819 28.407 -4.935 -1.687 2.224 40.008 A A 116 117 26.132 A A 125 124 3.313 17.190 -0.390 -1.499 AA_C116A117:U124G125_AA 19 8.741 -13.287 35.222 -3.977 1.479 2.882 30.432 A A 117 118 3.339 A A 124 123 2.956 1.752 -0.620 -1.520 AA_A117C118:G123U124_AA 20 -0.875 1.669 30.370 -3.209 1.025 2.627 36.241 A A 17 18 8.674 A A 159 158 2.976 5.359 -0.891 -1.150 AA_G17U18:A158C159_AA 21 5.231 -8.466 35.484 -2.499 2.069 3.235 23.958 A A 18 19 9.469 A A 158 157 3.508 3.913 1.214 -1.165 AA_U18U19:A157A158_AA 22 -0.757 1.833 23.629 -4.124 -3.179 2.348 36.740 A A 72 73 11.660 A A 66 65 3.105 7.264 2.583 -0.991 AA_C72G73:C65C66_AA 23 -6.755 10.842 35.420 -2.415 -4.881 2.783 37.502 A A 73 74 10.512 A A 65 64 3.108 6.724 -0.492 -1.678 AA_G73C74:G64C65_AA 24 -0.994 1.554 36.903 -3.408 0.647 2.056 38.558 A A 74 75 29.016 A A 64 63 2.965 18.430 0.906 -1.257 AA_C74A75:U63G64_AA 25 0.519 -0.816 34.012 -3.773 -1.320 2.426 27.168 A A 75 76 15.211 A A 63 62 2.954 7.009 0.708 -2.020 AA_A75G76:C62U63_AA 26 5.941 -12.894 25.595 -5.795 -0.239 2.709 34.389 A A 76 77 10.372 A A 62 61 3.040 6.101 -0.128 -1.671 AA_G76G77:C61C62_AA 27 -0.637 1.083 33.854 -3.670 0.128 2.725 41.632 A A 77 78 5.173 A A 61 60 2.970 3.670 -1.286 -1.800 AA_G77G78:A60C61_AA 28 2.632 -3.710 41.398 -2.871 2.052 0.980 51.203 A A 78 43 27.631 A A 60 59 4.146 22.256 -1.962 -3.472 AA_G78G43:U59A60_AA 29 23.613 -29.315 40.157 -5.394 3.731 2.862 47.513 A A 43 44 2.075 A A 59 58 2.835 1.668 -0.703 -0.980 AA_G43U44:A58U59_AA 30 -5.656 7.036 47.167 -1.333 0.475 2.737 30.792 A A 44 45 13.826 A A 58 57 3.143 7.274 0.270 -1.418 AA_U44U45:A57A58_AA 31 0.757 -1.438 29.931 -3.967 -0.374 2.909 29.804 A A 45 46 13.901 A A 57 56 3.293 7.070 1.607 -1.928 AA_U45C46:G56A57_AA 32 3.277 -6.442 28.789 -5.173 -2.465 3.124 67.062 A A 46 47 3.724 A A 56 41 3.174 4.112 -1.240 -0.721 AA_C46A47:U41G56_AA 33 0.361 -0.327 66.949 -0.807 1.136 2.106 -66.075 A A 47 48 4.367 A A 41 82 2.149 -4.756 2.599 -2.752 AA_A47G48:C82U41_AA 34 -4.025 -3.695 -65.814 2.649 2.278 -1.998 177.816 A A 51 92 -29.665 A A 89 88 -2.394 -59.254 0.407 -3.939 AA_G51A92:U88U89_AA 35 158.266 -79.235 157.071 -2.047 -0.409 3.023 93.224 A A 92 95 2.124 A A 88 87 2.980 3.086 2.165 -2.410 AA_A92C95:G87U88_AA 36 6.128 -4.219 93.029 -1.711 -1.385 3.002 30.845 A A 95 96 12.500 A A 87 86 3.503 6.594 -0.423 -2.130 AA_C95C96:G86G87_AA 37 -2.213 4.196 30.069 -5.298 0.361 2.896 31.131 A A 96 97 2.953 A A 86 85 3.002 1.584 -0.273 -1.771 AA_C96C97:G85G86_AA 38 1.377 -2.567 31.062 -3.572 0.746 2.206 31.494 A A 97 98 21.083 A A 85 84 2.998 11.173 -0.061 -1.692 AA_C97G98:C84G85_AA 39 -4.043 7.629 29.219 -4.842 -0.512 2.991 44.073 A A 98 99 1.623 A A 84 83 3.054 1.217 -0.606 -1.711 AA_G98U99:G83C84_AA 40 1.200 -1.600 44.041 -2.386 0.912 2.325 29.936 A A 99 100 17.262 A A 83 40 2.892 8.761 0.527 -1.706 AA_U99C100:G40G83_AA 41 4.286 -8.445 28.337 -4.788 -0.293 2.663 34.794 A A 100 101 12.880 A A 40 39 3.010 7.643 0.457 -1.289 AA_C100C101:G39G40_AA 42 -0.226 0.380 33.969 -3.178 -0.794 2.175 30.982 A A 101 102 27.078 A A 39 38 3.423 13.798 -0.199 -1.895 AA_C101G102:C38G39_AA 43 -8.053 15.804 26.632 -6.007 -1.063 2.947 39.867 A A 102 103 2.823 A A 38 37 3.020 1.923 0.109 -1.549 AA_G102U103:G37C38_AA 44 2.299 -3.375 39.758 -2.474 0.083 2.410 27.240 A A 103 104 14.213 A A 37 36 3.079 6.601 -0.632 -1.845 AA_U103U104:A36G37_AA 45 4.402 -9.479 26.080 -5.335 2.286 2.887 35.981 A A 104 105 7.375 A A 36 35 3.019 4.543 0.629 -1.101 AA_U104C105:G35A36_AA 46 1.675 -2.720 35.664 -2.370 -0.802 3.463 42.123 A A 105 106 3.878 A A 35 34 3.325 2.781 2.571 -1.342 AA_C105G106:G34G35_AA 47 4.177 -5.824 41.837 -2.166 -3.128 1.254 17.608 A A 106 107 45.414 A A 34 33 2.869 12.470 -3.141 -1.636 AA_G106G107:C33G34_AA 48 -2.303 8.388 12.241 -10.945 9.227 2.962 33.989 A A 107 108 1.636 A A 33 32 3.010 0.956 -0.125 -1.826 AA_G107C108:G32C33_AA 49 -0.900 1.541 33.965 -3.263 0.083 2.669 33.882 A A 108 109 8.347 A A 32 31 2.974 4.841 -0.027 -1.858 AA_C108C109:G31G32_AA 50 3.452 -5.952 33.372 -3.866 0.529 1.964 33.132 A A 109 110 25.669 A A 31 30 2.937 14.152 0.099 -1.661 AA_C109A110:U30G31_AA 51 4.071 -7.384 29.762 -4.800 0.370 2.910 25.859 A A 110 111 11.232 A A 30 29 3.245 4.986 0.707 -1.754 AA_A110G111:C29U30_AA 52 2.831 -6.377 25.226 -5.239 -0.829 6.081 -4.180 A A 111 160 -34.585 A A 29 28 2.960 1.766 4.363 -4.056 AA_G111U160:U28C29_AA 53 -3.729 -72.998 -0.670 10.468 -35.469 3.225 42.143 A A 160 161 5.598 A A 28 27 3.413 4.019 -0.177 -1.876 AA_U160U161:A27U28_AA 54 0.713 -0.993 41.953 -3.030 0.321 2.616 30.088 A A 161 162 6.960 A A 27 26 2.958 3.593 -0.518 -1.888 AA_U161G162:C26A27_AA 55 4.297 -8.323 29.574 -4.269 1.753 2.935 31.591 A A 162 163 2.267 A A 26 25 2.984 1.234 -0.467 -1.639 AA_G162U163:A25C26_AA 56 -1.191 2.189 31.546 -3.217 0.659 2.275 32.593 A A 163 164 16.113 A A 25 24 2.744 8.933 0.086 -1.384 AA_U163A164:U24A25_AA 57 0.086 -0.156 31.377 -3.683 -0.141 3.030 27.154 A A 164 165 -0.301 A A 24 23 3.363 -0.137 0.211 -2.479 AA_A164G165:C23U24_AA 58 -10.708 23.421 24.990 -5.245 -3.200 3.002 33.702 A A 165 166 0.725 A A 23 22 3.062 0.420 -0.147 -2.324 AA_G165C166:G22C23_AA 59 3.614 -6.244 33.510 -4.072 0.799 1.641 33.100 A A 166 167 30.173 A A 22 21 2.890 16.429 -0.682 -1.636 AA_C166G167:C21G22_AA 60 3.559 -6.536 28.618 -4.940 1.645 2.856 32.858 A A 167 168 2.044 A A 21 20 2.933 1.155 0.187 -1.868 AA_G167C168:G20C21_AA 61 -1.559 2.758 32.803 -3.478 -0.567 4.271 -14.880 A C 168 1 -2.166 A C 20 143 4.141 0.557 -0.326 -3.913 AC_C168G1:C143G20_CA 62 2.824 10.975 -14.600 14.497 1.838 3.033 36.217 C C 1 2 14.023 C C 143 142 3.486 8.638 0.024 -1.549 CC_G1G2:C142C143_CC 63 -0.741 1.202 35.198 -3.720 -0.144 2.452 38.920 C C 2 3 5.996 C C 142 141 2.804 3.949 0.483 -1.419 CC_G2G3:C141C142_CC 64 -9.735 14.780 37.529 -2.522 -1.692 3.280 36.410 C C 3 4 -2.007 C C 141 140 3.279 -1.252 0.689 -2.299 CC_G3C4:G140C141_CC 65 -3.323 5.326 36.242 -3.505 -1.566 repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release repository Initial release 1 0 2026-03-04 1 0 2026-03-04 1 0 1 2026-03-04 1 0 1 2026-03-04 1 0 2 2026-03-04 1 0 2026-03-04 1 0 1 2026-03-04 1 0 2026-03-04 United States National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) adrian.ferre@nih.gov 0000-0003-4549-1619 Ferre-D'Amare Adrian R principal investigator/group leader RNA scaffold attached to tRNA N RCSB Y RCSB 2025-02-12 REL MG MAGNESIUM ION K POTASSIUM ION HOH water 32630 synthetic construct sample 1 168 N N MO6 2 2 MG MG 201 A MO6 3 2 MG MG 202 A K 1 3 K K 203 A MO6 7 2 MG MG 201 C MO6 3 4 HOH HOH 301 A MO6 3 4 HOH HOH 302 A MO6 3 4 HOH HOH 303 A MO6 2 4 HOH HOH 304 A HOH 8 4 HOH HOH 305 A HOH 4 4 HOH HOH 306 A HOH 3 4 HOH HOH 307 A MO6 2 4 HOH HOH 308 A HOH 1 4 HOH HOH 309 A MO6 3 4 HOH HOH 310 A HOH 2 4 HOH HOH 311 A HOH 5 4 HOH HOH 312 A HOH 6 4 HOH HOH 313 A MO6 3 4 HOH HOH 314 A MO6 3 4 HOH HOH 315 A MO6 2 4 HOH HOH 316 A MO6 2 4 HOH HOH 317 A MO6 2 4 HOH HOH 318 A MO6 2 4 HOH HOH 319 A MO6 7 4 HOH HOH 301 C MO6 7 4 HOH HOH 302 C MO6 7 4 HOH HOH 303 C HOH 9 4 HOH HOH 304 C MO6 7 4 HOH HOH 305 C MO6 7 4 HOH HOH 306 C MO6 7 4 HOH HOH 307 C G 1 n 1 G 1 A G 2 n 2 G 2 A G 3 n 3 G 3 A C 4 n 4 C 4 A C 5 n 5 C 5 A A 6 n 6 A 6 A C 7 n 7 C 7 A U 8 n 8 U 8 A G 9 n 9 G 9 A U 10 n 10 U 10 A U 11 n 11 U 11 A U 12 n 12 U 12 A C 13 n 13 C 13 A A 14 n 14 A 14 A C 15 n 15 C 15 A U 16 n 16 U 16 A G 17 n 17 G 17 A U 18 n 18 U 18 A U 19 n 19 U 19 A G 20 n 20 G 20 A C 21 n 21 C 21 A G 22 n 22 G 22 A C 23 n 23 C 23 A U 24 n 24 U 24 A A 25 n 25 A 25 A C 26 n 26 C 26 A A 27 n 27 A 27 A U 28 n 28 U 28 A C 29 n 29 C 29 A U 30 n 30 U 30 A G 31 n 31 G 31 A G 32 n 32 G 32 A C 33 n 33 C 33 A G 34 n 34 G 34 A G 35 n 35 G 35 A A 36 n 36 A 36 A G 37 n 37 G 37 A C 38 n 38 C 38 A G 39 n 39 G 39 A G 40 n 40 G 40 A U 41 n 41 U 41 A A 42 n 42 A 42 A G 43 n 43 G 43 A U 44 n 44 U 44 A U 45 n 45 U 45 A C 46 n 46 C 46 A A 47 n 47 A 47 A G 48 n 48 G 48 A U 49 n 49 U 49 A C 50 n 50 C 50 A G 51 n 51 G 51 A G 52 n 52 G 52 A U 53 n 53 U 53 A U 54 n 54 U 54 A A 55 n 55 A 55 A G 56 n 56 G 56 A A 57 n 57 A 57 A A 58 n 58 A 58 A U 59 n 59 U 59 A A 60 n 60 A 60 A C 61 n 61 C 61 A C 62 n 62 C 62 A U 63 n 63 U 63 A G 64 n 64 G 64 A C 65 n 65 C 65 A C 66 n 66 C 66 A U 67 n 67 U 67 A G 68 n 68 G 68 A U 69 n 69 U 69 A C 70 n 70 C 70 A A 71 n 71 A 71 A C 72 n 72 C 72 A G 73 n 73 G 73 A C 74 n 74 C 74 A A 75 n 75 A 75 A G 76 n 76 G 76 A G 77 n 77 G 77 A G 78 n 78 G 78 A G 79 n 79 G 79 A G 80 n 80 G 80 A U 81 n 81 U 81 A C 82 n 82 C 82 A G 83 n 83 G 83 A C 84 n 84 C 84 A G 85 n 85 G 85 A G 86 n 86 G 86 A G 87 n 87 G 87 A U 88 n 88 U 88 A U 89 n 89 U 89 A C 90 n 90 C 90 A G 91 n 91 G 91 A A 92 n 92 A 92 A G 93 n 93 G 93 A U 94 n 94 U 94 A C 95 n 95 C 95 A C 96 n 96 C 96 A C 97 n 97 C 97 A G 98 n 98 G 98 A U 99 n 99 U 99 A C 100 n 100 C 100 A C 101 n 101 C 101 A G 102 n 102 G 102 A U 103 n 103 U 103 A U 104 n 104 U 104 A C 105 n 105 C 105 A G 106 n 106 G 106 A G 107 n 107 G 107 A C 108 n 108 C 108 A C 109 n 109 C 109 A A 110 n 110 A 110 A G 111 n 111 G 111 A G 112 n 112 G 112 A C 113 n 113 C 113 A C 114 n 114 C 114 A A 115 n 115 A 115 A C 116 n 116 C 116 A A 117 n 117 A 117 A C 118 n 118 C 118 A G 119 n 119 G 119 A A 120 n 120 A 120 A A 121 n 121 A 121 A A 122 n 122 A 122 A G 123 n 123 G 123 A U 124 n 124 U 124 A G 125 n 125 G 125 A U 126 n 126 U 126 A G 127 n 127 G 127 A G 128 n 128 G 128 A A 129 n 129 A 129 A G 130 n 130 G 130 A U 131 n 131 U 131 A G 132 n 132 G 132 A A 133 n 133 A 133 A C 134 n 134 C 134 A C 135 n 135 C 135 A A 136 n 136 A 136 A G 137 n 137 G 137 A U 138 n 138 U 138 A G 139 n 139 G 139 A G 140 n 140 G 140 A C 141 n 141 C 141 A C 142 n 142 C 142 A C 143 n 143 C 143 A n 144 144 A n 145 145 A n 146 146 A n 147 147 A n 148 148 A n 149 149 A n 150 150 A n 151 151 A n 152 152 A n 153 153 A n 154 154 A n 155 155 A A 156 n 156 A 156 A A 157 n 157 A 157 A A 158 n 158 A 158 A C 159 n 159 C 159 A U 160 n 160 U 160 A U 161 n 161 U 161 A G 162 n 162 G 162 A U 163 n 163 U 163 A A 164 n 164 A 164 A G 165 n 165 G 165 A C 166 n 166 C 166 A G 167 n 167 G 167 A C 168 n 168 C 168 A G 1 n 1 G 1 C G 2 n 2 G 2 C G 3 n 3 G 3 C C 4 n 4 C 4 C n 5 5 C n 6 6 C n 7 7 C n 8 8 C n 9 9 C n 10 10 C n 11 11 C n 12 12 C n 13 13 C n 14 14 C n 15 15 C n 16 16 C n 17 17 C n 18 18 C n 19 19 C n 20 20 C n 21 21 C n 22 22 C n 23 23 C n 24 24 C n 25 25 C n 26 26 C n 27 27 C n 28 28 C n 29 29 C n 30 30 C n 31 31 C n 32 32 C n 33 33 C n 34 34 C n 35 35 C n 36 36 C n 37 37 C n 38 38 C n 39 39 C n 40 40 C n 41 41 C n 42 42 C n 43 43 C n 44 44 C n 45 45 C n 46 46 C n 47 47 C n 48 48 C n 49 49 C n 50 50 C n 51 51 C n 52 52 C n 53 53 C n 54 54 C n 55 55 C n 56 56 C n 57 57 C n 58 58 C n 59 59 C n 60 60 C n 61 61 C n 62 62 C n 63 63 C n 64 64 C n 65 65 C n 66 66 C n 67 67 C n 68 68 C n 69 69 C n 70 70 C n 71 71 C n 72 72 C n 73 73 C n 74 74 C n 75 75 C n 76 76 C n 77 77 C n 78 78 C n 79 79 C n 80 80 C n 81 81 C n 82 82 C n 83 83 C n 84 84 C n 85 85 C n 86 86 C n 87 87 C n 88 88 C n 89 89 C n 90 90 C n 91 91 C n 92 92 C n 93 93 C n 94 94 C n 95 95 C n 96 96 C n 97 97 C n 98 98 C n 99 99 C n 100 100 C n 101 101 C n 102 102 C n 103 103 C n 104 104 C n 105 105 C n 106 106 C n 107 107 C n 108 108 C n 109 109 C n 110 110 C n 111 111 C n 112 112 C n 113 113 C n 114 114 C n 115 115 C n 116 116 C n 117 117 C n 118 118 C n 119 119 C n 120 120 C n 121 121 C n 122 122 C n 123 123 C n 124 124 C n 125 125 C n 126 126 C n 127 127 C n 128 128 C n 129 129 C n 130 130 C n 131 131 C n 132 132 C n 133 133 C n 134 134 C n 135 135 C n 136 136 C n 137 137 C n 138 138 C n 139 139 C G 140 n 140 G 140 C C 141 n 141 C 141 C C 142 n 142 C 142 C C 143 n 143 C 143 C n 144 144 C n 145 145 C n 146 146 C n 147 147 C n 148 148 C n 149 149 C n 150 150 C n 151 151 C n 152 152 C n 153 153 C n 154 154 C n 155 155 C n 156 156 C n 157 157 C n 158 158 C n 159 159 C n 160 160 C n 161 161 C n 162 162 C n 163 163 C n 164 164 C n 165 165 C n 166 166 C n 167 167 C n 168 168 C author_defined_assembly 2 dimeric not applicable electron microscopy A HOH 304 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 308 G O HOH 1_555 89.5 A HOH 304 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 316 G O HOH 1_555 179.4 A HOH 308 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 316 G O HOH 1_555 90.1 A HOH 304 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 317 G O HOH 1_555 90.7 A HOH 308 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 317 G O HOH 1_555 179.3 A HOH 316 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 317 G O HOH 1_555 89.7 A HOH 304 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 318 G O HOH 1_555 90.7 A HOH 308 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 318 G O HOH 1_555 90.1 A HOH 316 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 318 G O HOH 1_555 89.6 A HOH 317 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 318 G O HOH 1_555 89.3 A HOH 304 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 319 G O HOH 1_555 89.3 A HOH 308 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 319 G O HOH 1_555 89.9 A HOH 316 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 319 G O HOH 1_555 90.3 A HOH 317 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 319 G O HOH 1_555 90.7 A HOH 318 G O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 319 G O HOH 1_555 179.9 A HOH 301 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 302 G O HOH 1_555 89.5 A HOH 301 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 303 G O HOH 1_555 179.6 A HOH 302 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 303 G O HOH 1_555 90.1 A HOH 301 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 310 G O HOH 1_555 90.4 A HOH 302 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 310 G O HOH 1_555 90.4 A HOH 303 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 310 G O HOH 1_555 89.6 A HOH 301 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 314 G O HOH 1_555 89.8 A HOH 302 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 314 G O HOH 1_555 90.1 A HOH 303 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 314 G O HOH 1_555 90.2 A HOH 310 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 314 G O HOH 1_555 179.5 A HOH 301 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 315 G O HOH 1_555 90.6 A HOH 302 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 315 G O HOH 1_555 179.8 A HOH 303 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 315 G O HOH 1_555 89.8 A HOH 310 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 315 G O HOH 1_555 89.4 A HOH 314 G O HOH 1_555 A MG 202 D MG MG 1_555 A HOH 315 G O HOH 1_555 90.1 C HOH 301 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 302 H O HOH 1_555 89.7 C HOH 301 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 303 H O HOH 1_555 90.0 C HOH 302 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 303 H O HOH 1_555 90.1 C HOH 301 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 305 H O HOH 1_555 89.6 C HOH 302 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 305 H O HOH 1_555 90.6 C HOH 303 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 305 H O HOH 1_555 179.2 C HOH 301 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 306 H O HOH 1_555 179.6 C HOH 302 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 306 H O HOH 1_555 90.7 C HOH 303 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 306 H O HOH 1_555 89.9 C HOH 305 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 306 H O HOH 1_555 90.5 C HOH 301 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 307 H O HOH 1_555 89.3 C HOH 302 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 307 H O HOH 1_555 179.0 C HOH 303 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 307 H O HOH 1_555 89.9 C HOH 305 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 307 H O HOH 1_555 89.5 C HOH 306 H O HOH 1_555 C MG 201 F MG MG 1_555 C HOH 307 H O HOH 1_555 90.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A C 144 A C 144 1 Y 1 A A 145 A A 145 1 Y 1 A C 146 A C 146 1 Y 1 A C 147 A C 147 1 Y 1 A C 148 A C 148 1 Y 1 A U 149 A U 149 1 Y 1 A G 150 A G 150 1 Y 1 A A 151 A A 151 1 Y 1 A A 152 A A 152 1 Y 1 A G 153 A G 153 1 Y 1 A G 154 A G 154 1 Y 1 A U 155 A U 155 1 Y 1 C C 5 B C 5 1 Y 1 C A 6 B A 6 1 Y 1 C C 7 B C 7 1 Y 1 C U 8 B U 8 1 Y 1 C G 9 B G 9 1 Y 1 C U 10 B U 10 1 Y 1 C U 11 B U 11 1 Y 1 C U 12 B U 12 1 Y 1 C C 13 B C 13 1 Y 1 C A 14 B A 14 1 Y 1 C C 15 B C 15 1 Y 1 C U 16 B U 16 1 Y 1 C G 17 B G 17 1 Y 1 C U 18 B U 18 1 Y 1 C U 19 B U 19 1 Y 1 C G 20 B G 20 1 Y 1 C C 21 B C 21 1 Y 1 C G 22 B G 22 1 Y 1 C C 23 B C 23 1 Y 1 C U 24 B U 24 1 Y 1 C A 25 B A 25 1 Y 1 C C 26 B C 26 1 Y 1 C A 27 B A 27 1 Y 1 C U 28 B U 28 1 Y 1 C C 29 B C 29 1 Y 1 C U 30 B U 30 1 Y 1 C G 31 B G 31 1 Y 1 C G 32 B G 32 1 Y 1 C C 33 B C 33 1 Y 1 C G 34 B G 34 1 Y 1 C G 35 B G 35 1 Y 1 C A 36 B A 36 1 Y 1 C G 37 B G 37 1 Y 1 C C 38 B C 38 1 Y 1 C G 39 B G 39 1 Y 1 C G 40 B G 40 1 Y 1 C U 41 B U 41 1 Y 1 C A 42 B A 42 1 Y 1 C G 43 B G 43 1 Y 1 C U 44 B U 44 1 Y 1 C U 45 B U 45 1 Y 1 C C 46 B C 46 1 Y 1 C A 47 B A 47 1 Y 1 C G 48 B G 48 1 Y 1 C U 49 B U 49 1 Y 1 C C 50 B C 50 1 Y 1 C G 51 B G 51 1 Y 1 C G 52 B G 52 1 Y 1 C U 53 B U 53 1 Y 1 C U 54 B U 54 1 Y 1 C A 55 B A 55 1 Y 1 C G 56 B G 56 1 Y 1 C A 57 B A 57 1 Y 1 C A 58 B A 58 1 Y 1 C U 59 B U 59 1 Y 1 C A 60 B A 60 1 Y 1 C C 61 B C 61 1 Y 1 C C 62 B C 62 1 Y 1 C U 63 B U 63 1 Y 1 C G 64 B G 64 1 Y 1 C C 65 B C 65 1 Y 1 C C 66 B C 66 1 Y 1 C U 67 B U 67 1 Y 1 C G 68 B G 68 1 Y 1 C U 69 B U 69 1 Y 1 C C 70 B C 70 1 Y 1 C A 71 B A 71 1 Y 1 C C 72 B C 72 1 Y 1 C G 73 B G 73 1 Y 1 C C 74 B C 74 1 Y 1 C A 75 B A 75 1 Y 1 C G 76 B G 76 1 Y 1 C G 77 B G 77 1 Y 1 C G 78 B G 78 1 Y 1 C G 79 B G 79 1 Y 1 C G 80 B G 80 1 Y 1 C U 81 B U 81 1 Y 1 C C 82 B C 82 1 Y 1 C G 83 B G 83 1 Y 1 C C 84 B C 84 1 Y 1 C G 85 B G 85 1 Y 1 C G 86 B G 86 1 Y 1 C G 87 B G 87 1 Y 1 C U 88 B U 88 1 Y 1 C U 89 B U 89 1 Y 1 C C 90 B C 90 1 Y 1 C G 91 B G 91 1 Y 1 C A 92 B A 92 1 Y 1 C G 93 B G 93 1 Y 1 C U 94 B U 94 1 Y 1 C C 95 B C 95 1 Y 1 C C 96 B C 96 1 Y 1 C C 97 B C 97 1 Y 1 C G 98 B G 98 1 Y 1 C U 99 B U 99 1 Y 1 C C 100 B C 100 1 Y 1 C C 101 B C 101 1 Y 1 C G 102 B G 102 1 Y 1 C U 103 B U 103 1 Y 1 C U 104 B U 104 1 Y 1 C C 105 B C 105 1 Y 1 C G 106 B G 106 1 Y 1 C G 107 B G 107 1 Y 1 C C 108 B C 108 1 Y 1 C C 109 B C 109 1 Y 1 C A 110 B A 110 1 Y 1 C G 111 B G 111 1 Y 1 C G 112 B G 112 1 Y 1 C C 113 B C 113 1 Y 1 C C 114 B C 114 1 Y 1 C A 115 B A 115 1 Y 1 C C 116 B C 116 1 Y 1 C A 117 B A 117 1 Y 1 C C 118 B C 118 1 Y 1 C G 119 B G 119 1 Y 1 C A 120 B A 120 1 Y 1 C A 121 B A 121 1 Y 1 C A 122 B A 122 1 Y 1 C G 123 B G 123 1 Y 1 C U 124 B U 124 1 Y 1 C G 125 B G 125 1 Y 1 C U 126 B U 126 1 Y 1 C G 127 B G 127 1 Y 1 C G 128 B G 128 1 Y 1 C A 129 B A 129 1 Y 1 C G 130 B G 130 1 Y 1 C U 131 B U 131 1 Y 1 C G 132 B G 132 1 Y 1 C A 133 B A 133 1 Y 1 C C 134 B C 134 1 Y 1 C C 135 B C 135 1 Y 1 C A 136 B A 136 1 Y 1 C G 137 B G 137 1 Y 1 C U 138 B U 138 1 Y 1 C G 139 B G 139 1 Y 1 C C 144 B C 144 1 Y 1 C A 145 B A 145 1 Y 1 C C 146 B C 146 1 Y 1 C C 147 B C 147 1 Y 1 C C 148 B C 148 1 Y 1 C U 149 B U 149 1 Y 1 C G 150 B G 150 1 Y 1 C A 151 B A 151 1 Y 1 C A 152 B A 152 1 Y 1 C G 153 B G 153 1 Y 1 C G 154 B G 154 1 Y 1 C U 155 B U 155 1 Y 1 C A 156 B A 156 1 Y 1 C A 157 B A 157 1 Y 1 C A 158 B A 158 1 Y 1 C C 159 B C 159 1 Y 1 C U 160 B U 160 1 Y 1 C U 161 B U 161 1 Y 1 C G 162 B G 162 1 Y 1 C U 163 B U 163 1 Y 1 C A 164 B A 164 1 Y 1 C G 165 B G 165 1 Y 1 C C 166 B C 166 1 Y 1 C G 167 B G 167 1 Y 1 C C 168 B C 168 1 Y 1 A A OP2 O A HOH 110 301 2.16 1 A A OP1 N2 U G 49 93 2.18 1 3.82 0.50 122.70 126.52 A A A C5 C6 N1 U U U 11 11 11 N 1 -8.64 1.40 121.20 112.56 A A A C6 N1 C1' U U U 11 11 11 N 1 11.33 1.20 117.70 129.03 A A A C2 N1 C1' U U U 11 11 11 N 1 6.72 1.10 118.80 125.52 A A A C2 N1 C1' C C C 135 135 135 N 3.67 REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS) 0.006 3921 0.756 6124 18.812 1954 0.035 818 0.004 164 N RNA scaffold attached to tRNA 1 N N 1 N N 2 N N 2 N N 3 N N 2 N N 4 N N 4 N N metalc 2.178 A MG 201 C MG MG 1_555 A HOH 304 G O HOH 1_555 metalc 2.175 A MG 201 C MG MG 1_555 A HOH 308 G O HOH 1_555 metalc 2.175 A MG 201 C MG MG 1_555 A HOH 316 G O HOH 1_555 metalc 2.178 A MG 201 C MG MG 1_555 A HOH 317 G O HOH 1_555 metalc 2.177 A MG 201 C MG MG 1_555 A HOH 318 G O HOH 1_555 metalc 2.178 A MG 201 C MG MG 1_555 A HOH 319 G O HOH 1_555 metalc 2.177 A MG 202 D MG MG 1_555 A HOH 301 G O HOH 1_555 metalc 2.178 A MG 202 D MG MG 1_555 A HOH 302 G O HOH 1_555 metalc 2.177 A MG 202 D MG MG 1_555 A HOH 303 G O HOH 1_555 metalc 2.177 A MG 202 D MG MG 1_555 A HOH 310 G O HOH 1_555 metalc 2.178 A MG 202 D MG MG 1_555 A HOH 314 G O HOH 1_555 metalc 2.179 A MG 202 D MG MG 1_555 A HOH 315 G O HOH 1_555 metalc 2.171 C MG 201 F MG MG 1_555 C HOH 301 H O HOH 1_555 metalc 2.182 C MG 201 F MG MG 1_555 C HOH 302 H O HOH 1_555 metalc 2.179 C MG 201 F MG MG 1_555 C HOH 303 H O HOH 1_555 metalc 2.177 C MG 201 F MG MG 1_555 C HOH 305 H O HOH 1_555 metalc 2.181 C MG 201 F MG MG 1_555 C HOH 306 H O HOH 1_555 metalc 2.175 C MG 201 F MG MG 1_555 C HOH 307 H O HOH 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 143 A N3 C 143 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 143 A O2 C 143 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 143 A N4 C 143 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 142 A N3 C 142 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 142 A O2 C 142 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 142 A N4 C 142 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 143 A N3 C 143 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 143 A O2 C 143 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 143 A N4 C 143 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 A C 141 A N3 C 141 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 A C 141 A O2 C 141 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 A C 141 A N4 C 141 1_555 hydrog WATSON-CRICK A C 4 A N3 C 4 1_555 A G 140 A N1 G 140 1_555 hydrog WATSON-CRICK A C 4 A N4 C 4 1_555 A G 140 A O6 G 140 1_555 hydrog WATSON-CRICK A C 4 A O2 C 4 1_555 A G 140 A N2 G 140 1_555 hydrog WATSON-CRICK A C 5 A N3 C 5 1_555 A G 139 A N1 G 139 1_555 hydrog WATSON-CRICK A C 5 A N4 C 5 1_555 A G 139 A O6 G 139 1_555 hydrog WATSON-CRICK A C 5 A O2 C 5 1_555 A G 139 A N2 G 139 1_555 hydrog WATSON-CRICK A A 6 A N1 A 6 1_555 A U 138 A N3 U 138 1_555 hydrog WATSON-CRICK A A 6 A N6 A 6 1_555 A U 138 A O4 U 138 1_555 hydrog WATSON-CRICK A C 7 A N3 C 7 1_555 A G 137 A N1 G 137 1_555 hydrog WATSON-CRICK A C 7 A N4 C 7 1_555 A G 137 A O6 G 137 1_555 hydrog WATSON-CRICK A C 7 A O2 C 7 1_555 A G 137 A N2 G 137 1_555 hydrog WATSON-CRICK A U 8 A N3 U 8 1_555 A A 136 A N1 A 136 1_555 hydrog WATSON-CRICK A U 8 A O4 U 8 1_555 A A 136 A N6 A 136 1_555 hydrog WATSON-CRICK A G 9 A N1 G 9 1_555 A C 135 A N3 C 135 1_555 hydrog WATSON-CRICK A G 9 A N2 G 9 1_555 A C 135 A O2 C 135 1_555 hydrog WATSON-CRICK A G 9 A O6 G 9 1_555 A C 135 A N4 C 135 1_555 hydrog TYPE_18_PAIR A U 11 A N3 U 11 1_555 A C 134 A N3 C 134 1_555 hydrog TYPE_18_PAIR A U 11 A O4 U 11 1_555 A C 134 A N4 C 134 1_555 hydrog U-A PAIR A U 12 A N3 U 12 1_555 A A 133 A N1 A 133 1_555 hydrog WATSON-CRICK A C 13 A N3 C 13 1_555 A G 132 A N1 G 132 1_555 hydrog WATSON-CRICK A C 13 A N4 C 13 1_555 A G 132 A O6 G 132 1_555 hydrog WATSON-CRICK A C 13 A O2 C 13 1_555 A G 132 A N2 G 132 1_555 hydrog WATSON-CRICK A A 14 A N1 A 14 1_555 A U 131 A N3 U 131 1_555 hydrog WATSON-CRICK A A 14 A N6 A 14 1_555 A U 131 A O4 U 131 1_555 hydrog WATSON-CRICK A C 15 A N3 C 15 1_555 A G 130 A N1 G 130 1_555 hydrog WATSON-CRICK A C 15 A N4 C 15 1_555 A G 130 A O6 G 130 1_555 hydrog WATSON-CRICK A C 15 A O2 C 15 1_555 A G 130 A N2 G 130 1_555 hydrog U-C MISPAIR A U 16 A O4 U 16 1_555 A C 113 A N4 C 113 1_555 hydrog WATSON-CRICK A U 16 A N3 U 16 1_555 A A 129 A N1 A 129 1_555 hydrog WATSON-CRICK A U 16 A O4 U 16 1_555 A A 129 A N6 A 129 1_555 hydrog WATSON-CRICK A G 17 A N1 G 17 1_555 A C 159 A N3 C 159 1_555 hydrog WATSON-CRICK A G 17 A N2 G 17 1_555 A C 159 A O2 C 159 1_555 hydrog WATSON-CRICK A G 17 A O6 G 17 1_555 A C 159 A N4 C 159 1_555 hydrog WATSON-CRICK A U 18 A N3 U 18 1_555 A A 158 A N1 A 158 1_555 hydrog WATSON-CRICK A U 18 A O4 U 18 1_555 A A 158 A N6 A 158 1_555 hydrog U-A PAIR A U 19 A N3 U 19 1_555 A A 157 A N1 A 157 1_555 hydrog WATSON-CRICK A G 20 A N1 G 20 1_555 A C 168 A N3 C 168 1_555 hydrog WATSON-CRICK A G 20 A N2 G 20 1_555 A C 168 A O2 C 168 1_555 hydrog WATSON-CRICK A G 20 A O6 G 20 1_555 A C 168 A N4 C 168 1_555 hydrog WATSON-CRICK A C 21 A N3 C 21 1_555 A G 167 A N1 G 167 1_555 hydrog WATSON-CRICK A C 21 A N4 C 21 1_555 A G 167 A O6 G 167 1_555 hydrog WATSON-CRICK A C 21 A O2 C 21 1_555 A G 167 A N2 G 167 1_555 hydrog WATSON-CRICK A G 22 A N1 G 22 1_555 A C 166 A N3 C 166 1_555 hydrog WATSON-CRICK A G 22 A N2 G 22 1_555 A C 166 A O2 C 166 1_555 hydrog WATSON-CRICK A G 22 A O6 G 22 1_555 A C 166 A N4 C 166 1_555 hydrog WATSON-CRICK A C 23 A N3 C 23 1_555 A G 165 A N1 G 165 1_555 hydrog WATSON-CRICK A C 23 A N4 C 23 1_555 A G 165 A O6 G 165 1_555 hydrog WATSON-CRICK A C 23 A O2 C 23 1_555 A G 165 A N2 G 165 1_555 hydrog WATSON-CRICK A U 24 A N3 U 24 1_555 A A 164 A N1 A 164 1_555 hydrog WATSON-CRICK A U 24 A O4 U 24 1_555 A A 164 A N6 A 164 1_555 hydrog WATSON-CRICK A A 25 A N1 A 25 1_555 A U 163 A N3 U 163 1_555 hydrog WATSON-CRICK A A 25 A N6 A 25 1_555 A U 163 A O4 U 163 1_555 hydrog WATSON-CRICK A C 26 A N3 C 26 1_555 A G 162 A N1 G 162 1_555 hydrog WATSON-CRICK A C 26 A N4 C 26 1_555 A G 162 A O6 G 162 1_555 hydrog WATSON-CRICK A C 26 A O2 C 26 1_555 A G 162 A N2 G 162 1_555 hydrog WATSON-CRICK A A 27 A N1 A 27 1_555 A U 161 A N3 U 161 1_555 hydrog WATSON-CRICK A A 27 A N6 A 27 1_555 A U 161 A O4 U 161 1_555 hydrog TYPE_16_PAIR A U 28 A N3 U 28 1_555 A U 160 A O4 U 160 1_555 hydrog TYPE_16_PAIR A U 28 A O2 U 28 1_555 A U 160 A N3 U 160 1_555 hydrog WATSON-CRICK A C 29 A N3 C 29 1_555 A G 111 A N1 G 111 1_555 hydrog WATSON-CRICK A C 29 A N4 C 29 1_555 A G 111 A O6 G 111 1_555 hydrog WATSON-CRICK A C 29 A O2 C 29 1_555 A G 111 A N2 G 111 1_555 hydrog WATSON-CRICK A U 30 A N3 U 30 1_555 A A 110 A N1 A 110 1_555 hydrog WATSON-CRICK A U 30 A O4 U 30 1_555 A A 110 A N6 A 110 1_555 hydrog WATSON-CRICK A G 31 A N1 G 31 1_555 A C 109 A N3 C 109 1_555 hydrog WATSON-CRICK A G 31 A N2 G 31 1_555 A C 109 A O2 C 109 1_555 hydrog WATSON-CRICK A G 31 A O6 G 31 1_555 A C 109 A N4 C 109 1_555 hydrog WATSON-CRICK A G 32 A N1 G 32 1_555 A C 108 A N3 C 108 1_555 hydrog WATSON-CRICK A G 32 A N2 G 32 1_555 A C 108 A O2 C 108 1_555 hydrog WATSON-CRICK A G 32 A O6 G 32 1_555 A C 108 A N4 C 108 1_555 hydrog WATSON-CRICK A C 33 A N3 C 33 1_555 A G 107 A N1 G 107 1_555 hydrog WATSON-CRICK A C 33 A N4 C 33 1_555 A G 107 A O6 G 107 1_555 hydrog WATSON-CRICK A C 33 A O2 C 33 1_555 A G 107 A N2 G 107 1_555 hydrog G-G MISPAIR A G 34 A O6 G 34 1_555 A G 106 A N2 G 106 1_555 hydrog WATSON-CRICK A G 35 A N1 G 35 1_555 A C 105 A N3 C 105 1_555 hydrog WATSON-CRICK A G 35 A N2 G 35 1_555 A C 105 A O2 C 105 1_555 hydrog WATSON-CRICK A G 35 A O6 G 35 1_555 A C 105 A N4 C 105 1_555 hydrog WATSON-CRICK A A 36 A N1 A 36 1_555 A U 104 A N3 U 104 1_555 hydrog WATSON-CRICK A A 36 A N6 A 36 1_555 A U 104 A O4 U 104 1_555 hydrog TYPE_28_PAIR A G 37 A N1 G 37 1_555 A U 103 A O2 U 103 1_555 hydrog TYPE_28_PAIR A G 37 A O6 G 37 1_555 A U 103 A N3 U 103 1_555 hydrog WATSON-CRICK A C 38 A N3 C 38 1_555 A G 102 A N1 G 102 1_555 hydrog WATSON-CRICK A C 38 A N4 C 38 1_555 A G 102 A O6 G 102 1_555 hydrog WATSON-CRICK A C 38 A O2 C 38 1_555 A G 102 A N2 G 102 1_555 hydrog WATSON-CRICK A G 39 A N1 G 39 1_555 A C 101 A N3 C 101 1_555 hydrog WATSON-CRICK A G 39 A N2 G 39 1_555 A C 101 A O2 C 101 1_555 hydrog WATSON-CRICK A G 39 A O6 G 39 1_555 A C 101 A N4 C 101 1_555 hydrog WATSON-CRICK A G 40 A N1 G 40 1_555 A C 100 A N3 C 100 1_555 hydrog WATSON-CRICK A G 40 A N2 G 40 1_555 A C 100 A O2 C 100 1_555 hydrog WATSON-CRICK A G 40 A O6 G 40 1_555 A C 100 A N4 C 100 1_555 hydrog REVERSED HOOGSTEEN A U 41 A N3 U 41 1_555 A A 47 A N7 A 47 1_555 hydrog REVERSED HOOGSTEEN A U 41 A O2 U 41 1_555 A A 47 A N6 A 47 1_555 hydrog A-A MISPAIR A A 42 A N7 A 42 1_555 A A 57 A N6 A 57 1_555 hydrog TYPE_28_PAIR A G 43 A N1 G 43 1_555 A U 59 A O2 U 59 1_555 hydrog TYPE_28_PAIR A G 43 A O6 G 43 1_555 A U 59 A N3 U 59 1_555 hydrog G-G MISPAIR A G 43 A N7 G 43 1_555 A G 79 A N2 G 79 1_555 hydrog WATSON-CRICK A U 44 A N3 U 44 1_555 A A 58 A N1 A 58 1_555 hydrog WATSON-CRICK A U 44 A O4 U 44 1_555 A A 58 A N6 A 58 1_555 hydrog WATSON-CRICK A U 45 A N3 U 45 1_555 A A 57 A N1 A 57 1_555 hydrog WATSON-CRICK A U 45 A O4 U 45 1_555 A A 57 A N6 A 57 1_555 hydrog WATSON-CRICK A U 45 A N3 U 45 1_555 A A 58 A N1 A 58 1_555 hydrog WATSON-CRICK A U 45 A O4 U 45 1_555 A A 58 A N6 A 58 1_555 hydrog WATSON-CRICK A C 46 A N3 C 46 1_555 A G 56 A N1 G 56 1_555 hydrog WATSON-CRICK A C 46 A N4 C 46 1_555 A G 56 A O6 G 56 1_555 hydrog WATSON-CRICK A C 46 A O2 C 46 1_555 A G 56 A N2 G 56 1_555 hydrog A-A MISPAIR A A 47 A N6 A 47 1_555 A A 55 A N3 A 55 1_555 hydrog REVERSED WATSON-CRICK A G 48 A N1 G 48 1_555 A C 82 A O2 C 82 1_555 hydrog REVERSED WATSON-CRICK A G 48 A N2 G 48 1_555 A C 82 A N3 C 82 1_555 hydrog G-U MISPAIR A G 51 A N2 G 51 1_555 A U 89 A O2 U 89 1_555 hydrog WATSON-CRICK A G 52 A N1 G 52 1_555 A C 90 A N3 C 90 1_555 hydrog WATSON-CRICK A G 52 A N2 G 52 1_555 A C 90 A O2 C 90 1_555 hydrog WATSON-CRICK A G 52 A O6 G 52 1_555 A C 90 A N4 C 90 1_555 hydrog TYPE_7_PAIR A G 56 A N7 G 56 1_555 A G 80 A N1 G 80 1_555 hydrog TYPE_7_PAIR A G 56 A O6 G 56 1_555 A G 80 A N2 G 80 1_555 hydrog TYPE_8_PAIR A A 60 A N1 A 60 1_555 A G 78 A N1 G 78 1_555 hydrog TYPE_8_PAIR A A 60 A N6 A 60 1_555 A G 78 A O6 G 78 1_555 hydrog WATSON-CRICK A C 61 A N3 C 61 1_555 A G 77 A N1 G 77 1_555 hydrog WATSON-CRICK A C 61 A N4 C 61 1_555 A G 77 A O6 G 77 1_555 hydrog WATSON-CRICK A C 61 A O2 C 61 1_555 A G 77 A N2 G 77 1_555 hydrog WATSON-CRICK A C 62 A N3 C 62 1_555 A G 76 A N1 G 76 1_555 hydrog WATSON-CRICK A C 62 A N4 C 62 1_555 A G 76 A O6 G 76 1_555 hydrog WATSON-CRICK A C 62 A O2 C 62 1_555 A G 76 A N2 G 76 1_555 hydrog WATSON-CRICK A U 63 A N3 U 63 1_555 A A 75 A N1 A 75 1_555 hydrog WATSON-CRICK A U 63 A O4 U 63 1_555 A A 75 A N6 A 75 1_555 hydrog WATSON-CRICK A G 64 A N1 G 64 1_555 A C 74 A N3 C 74 1_555 hydrog WATSON-CRICK A G 64 A N2 G 64 1_555 A C 74 A O2 C 74 1_555 hydrog WATSON-CRICK A G 64 A O6 G 64 1_555 A C 74 A N4 C 74 1_555 hydrog WATSON-CRICK A C 65 A N3 C 65 1_555 A G 73 A N1 G 73 1_555 hydrog WATSON-CRICK A C 65 A N4 C 65 1_555 A G 73 A O6 G 73 1_555 hydrog WATSON-CRICK A C 65 A O2 C 65 1_555 A G 73 A N2 G 73 1_555 hydrog C-C MISPAIR A C 66 A N3 C 66 1_555 A C 72 A N4 C 72 1_555 hydrog U-C MISPAIR A U 67 A O2 U 67 1_555 A C 72 A N4 C 72 1_555 hydrog TYPE_28_PAIR A G 83 A N1 G 83 1_555 A U 99 A O2 U 99 1_555 hydrog TYPE_28_PAIR A G 83 A O6 G 83 1_555 A U 99 A N3 U 99 1_555 hydrog WATSON-CRICK A C 84 A N3 C 84 1_555 A G 98 A N1 G 98 1_555 hydrog WATSON-CRICK A C 84 A N4 C 84 1_555 A G 98 A O6 G 98 1_555 hydrog WATSON-CRICK A C 84 A O2 C 84 1_555 A G 98 A N2 G 98 1_555 hydrog WATSON-CRICK A G 85 A N1 G 85 1_555 A C 97 A N3 C 97 1_555 hydrog WATSON-CRICK A G 85 A N2 G 85 1_555 A C 97 A O2 C 97 1_555 hydrog WATSON-CRICK A G 85 A O6 G 85 1_555 A C 97 A N4 C 97 1_555 hydrog WATSON-CRICK A G 86 A N1 G 86 1_555 A C 96 A N3 C 96 1_555 hydrog WATSON-CRICK A G 86 A N2 G 86 1_555 A C 96 A O2 C 96 1_555 hydrog WATSON-CRICK A G 86 A O6 G 86 1_555 A C 96 A N4 C 96 1_555 hydrog WATSON-CRICK A G 87 A N1 G 87 1_555 A C 95 A N3 C 95 1_555 hydrog WATSON-CRICK A G 87 A N2 G 87 1_555 A C 95 A O2 C 95 1_555 hydrog WATSON-CRICK A G 87 A O6 G 87 1_555 A C 95 A N4 C 95 1_555 hydrog REVERSED HOOGSTEEN A U 88 A N3 U 88 1_555 A A 92 A N7 A 92 1_555 hydrog REVERSED HOOGSTEEN A U 88 A O2 U 88 1_555 A A 92 A N6 A 92 1_555 hydrog WATSON-CRICK A C 113 A N3 C 113 1_555 A G 128 A N1 G 128 1_555 hydrog WATSON-CRICK A C 113 A N4 C 113 1_555 A G 128 A O6 G 128 1_555 hydrog WATSON-CRICK A C 113 A O2 C 113 1_555 A G 128 A N2 G 128 1_555 hydrog WATSON-CRICK A C 114 A N3 C 114 1_555 A G 127 A N1 G 127 1_555 hydrog WATSON-CRICK A C 114 A N4 C 114 1_555 A G 127 A O6 G 127 1_555 hydrog WATSON-CRICK A C 114 A O2 C 114 1_555 A G 127 A N2 G 127 1_555 hydrog WATSON-CRICK A A 115 A N1 A 115 1_555 A U 126 A N3 U 126 1_555 hydrog WATSON-CRICK A A 115 A N6 A 115 1_555 A U 126 A O4 U 126 1_555 hydrog WATSON-CRICK A C 116 A N3 C 116 1_555 A G 125 A N1 G 125 1_555 hydrog WATSON-CRICK A C 116 A N4 C 116 1_555 A G 125 A O6 G 125 1_555 hydrog WATSON-CRICK A C 116 A O2 C 116 1_555 A G 125 A N2 G 125 1_555 hydrog WATSON-CRICK A A 117 A N1 A 117 1_555 A U 124 A N3 U 124 1_555 hydrog WATSON-CRICK A A 117 A N6 A 117 1_555 A U 124 A O4 U 124 1_555 hydrog WATSON-CRICK A C 118 A N3 C 118 1_555 A G 123 A N1 G 123 1_555 hydrog WATSON-CRICK A C 118 A N4 C 118 1_555 A G 123 A O6 G 123 1_555 hydrog WATSON-CRICK A C 118 A O2 C 118 1_555 A G 123 A N2 G 123 1_555 hydrog WATSON-CRICK C G 1 B N1 G 1 1_555 C C 143 B N3 C 143 1_555 hydrog WATSON-CRICK C G 1 B N2 G 1 1_555 C C 143 B O2 C 143 1_555 hydrog WATSON-CRICK C G 1 B O6 G 1 1_555 C C 143 B N4 C 143 1_555 hydrog WATSON-CRICK C G 2 B N1 G 2 1_555 C C 142 B N3 C 142 1_555 hydrog WATSON-CRICK C G 2 B N2 G 2 1_555 C C 142 B O2 C 142 1_555 hydrog WATSON-CRICK C G 2 B O6 G 2 1_555 C C 142 B N4 C 142 1_555 hydrog WATSON-CRICK C G 3 B N1 G 3 1_555 C C 141 B N3 C 141 1_555 hydrog WATSON-CRICK C G 3 B N2 G 3 1_555 C C 141 B O2 C 141 1_555 hydrog WATSON-CRICK C G 3 B O6 G 3 1_555 C C 141 B N4 C 141 1_555 hydrog WATSON-CRICK C C 4 B N3 C 4 1_555 C G 140 B N1 G 140 1_555 hydrog WATSON-CRICK C C 4 B N4 C 4 1_555 C G 140 B O6 G 140 1_555 hydrog WATSON-CRICK C C 4 B O2 C 4 1_555 C G 140 B N2 G 140 1_555 RNA viral RNA, scaffold, engineering, RNA 9NAK PDB 1 1 9NAK 1 168 9NAK 1 168 9NAK A 1 1 168 1 168 9NAK 1 168 9NAK C 1 1 168 1 P 1