0.010866 0.000000 0.000000 0.000000 0.010866 0.000000 0.000000 0.000000 0.009312 0.00000 0.00000 0.00000 Schumacher, M.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 32 90.00 90.00 90.00 92.031 92.031 107.392 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C N 122 N N N 123 N C N 124 N O N 125 N N N 126 N C N 127 N O N 128 N C N 129 N C N 130 N C N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 S C N 148 N C N 149 N O N 150 N C N 151 N C N 152 N C N 153 N O N 154 N N N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N O N 174 N O N 175 N O N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 N C N 187 N C N 188 N O N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C Y 200 N C Y 201 N N Y 202 N C Y 203 N C Y 204 N N N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 S C N 221 N C N 222 N C N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N N N 239 S C N 240 N C N 241 N O N 242 N C N 243 N C N 244 N C N 245 N C N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N C N 266 N C N 267 N C N 268 N N N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 N C N 290 N C N 291 N S N 292 N C N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C Y 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C N 333 N C N 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N O N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 R C N 364 N O N 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N N Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N C N 414 N O N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N N N 428 S C N 429 N C N 430 N O N 431 N C N 432 N C N 433 N C N 434 N O N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing Y 93 N sing Y 94 N sing Y 95 N doub N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing Y 202 N sing Y 203 N doub Y 204 N doub N 205 N sing Y 206 N sing N 207 N sing Y 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N doub N 313 N sing Y 314 N doub N 315 N sing Y 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing Y 377 N doub Y 378 N sing Y 379 N sing N 380 N sing Y 381 N doub Y 382 N sing Y 383 N sing N 384 N sing Y 385 N sing Y 386 N doub N 387 N sing Y 388 N doub N 389 N sing Y 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing Y 405 N doub Y 406 N sing Y 407 N sing N 408 N sing Y 409 N doub N 410 N sing Y 411 N doub N 412 N sing Y 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N doub N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing To Be Published 0353 Structure of M tuberculosis NapA bound to 20mer AT rich DNA 10.2210/pdb9n2n/pdb pdb_00009n2n 100 1 N PIXEL 2024-01-23 DECTRIS PILATUS3 6M SINGLE WAVELENGTH M x-ray 1 1.0 1.0 5.0.2 ALS 1.0 SYNCHROTRON ALS BEAMLINE 5.0.2 10379.029 Fis family transcriptional regulator 2 man polymer 6129.039 DNA (5'-D(P*TP*AP*TP*TP*TP*AP*TP*T)-3') 2 syn polymer NapA no no GSHMADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARA ARRLGFEVT GSHMADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARA ARRLGFEVT U,A polypeptide(L) no no (DA)(DT)(DT)(DA)(DT)(DT)(DA)(DA)(DT)(DT)(DA)(DA)(DT)(DT)(DA)(DA)(DT)(DA)(DA)(DT) ATTATTAATTAATTAATAAT E,F polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 89 A4S10_00456, DKC2_0461, DSI80_09725, ERS007657_03567, ERS007679_01808, ERS007681_02029, ERS007688_00846, ERS007718_00086, ERS007741_01318, ERS027646_00220, ERS027659_01205, ERS027661_02888, ERS053720_01018 1773 Mycobacterium tuberculosis 562 Escherichia coli Biological sequence 1 1.72 28.56 VAPOR DIFFUSION, HANGING DROP 7.5% MPD, MES buffer 298 -4.700 1 20 E 23 E 28 0.442 E_DA23:DT28_E 1 -19.925 -1.266 -0.115 -0.367 9.127 1 E 24 E 27 -7.439 E_DT24:DA27_E 2 -25.766 0.937 -0.932 -1.261 6.990 E 25 E 26 -14.372 E_DT25:DA26_E 3 -21.258 -2.309 -0.347 0.434 -6.990 E 26 E 25 -14.372 E_DA26:DT25_E 4 -21.258 2.309 -0.347 0.434 -9.127 1 E 27 E 24 -7.439 E_DA27:DT24_E 5 -25.766 -0.937 -0.932 -1.261 4.700 1 20 E 28 E 23 0.442 E_DT28:DA23_E 6 -19.925 1.266 -0.115 -0.367 2.998 44.246 E E 23 24 6.335 E E 28 27 3.010 4.757 -0.584 0.619 EE_DA23DT24:DA27DT28_EE 1 3.938 -5.244 43.834 0.413 1.115 3.092 22.465 E E 24 25 3.556 E E 27 26 3.086 1.384 0.093 0.262 EE_DT24DT25:DA26DA27_EE 2 -0.721 1.853 22.412 0.190 -0.490 3.592 52.001 E E 25 26 11.279 E E 26 25 3.717 9.837 0.000 -0.378 EE_DT25DA26:DT25DA26_EE 3 0.000 0.000 51.126 -1.172 0.000 3.092 22.465 E E 26 27 3.556 E E 25 24 3.086 1.384 -0.093 0.262 EE_DA26DA27:DT24DT25_EE 4 0.721 -1.853 22.412 0.190 0.490 2.998 44.246 E E 27 28 6.335 E E 24 23 3.010 4.757 0.584 0.619 EE_DA27DT28:DA23DT24_EE 5 -3.938 5.244 43.834 0.413 -1.115 repository Initial release 1 0 2025-10-22 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R35GM130290 Maria.schumacher@duke.edu 0000-0002-5264-1120 Maria Schumacher principal investigator/group leader N RCSB Y RCSB 2025-01-29 REL REL 32630 synthetic construct sample 1 20 N 9N2H PDB experimental model n 1 14 U n 2 15 U n 3 16 U n 4 17 U n 5 18 U n 6 19 U n 7 20 U ALA 21 n 8 LEU 21 U THR 22 n 9 THR 22 U ARG 23 n 10 ARG 23 U ARG 24 n 11 ARG 24 U GLU 25 n 12 GLU 25 U HIS 26 n 13 HIS 26 U ASP 27 n 14 ASP 27 U ILE 28 n 15 ILE 28 U LEU 29 n 16 LEU 29 U ALA 30 n 17 ALA 30 U PHE 31 n 18 PHE 31 U GLU 32 n 19 GLU 32 U ARG 33 n 20 ARG 33 U GLN 34 n 21 GLN 34 U TRP 35 n 22 TRP 35 U TRP 36 n 23 TRP 36 U LYS 37 n 24 LYS 37 U PHE 38 n 25 PHE 38 U ALA 39 n 26 ALA 39 U GLY 40 n 27 GLY 40 U VAL 41 n 28 VAL 41 U LYS 42 n 29 LYS 42 U GLU 43 n 30 GLU 43 U GLU 44 n 31 GLU 44 U ALA 45 n 32 ALA 45 U ILE 46 n 33 ILE 46 U LYS 47 n 34 LYS 47 U GLU 48 n 35 GLU 48 U LEU 49 n 36 LEU 49 U PHE 50 n 37 PHE 50 U SER 51 n 38 SER 51 U MET 52 n 39 MET 52 U SER 53 n 40 SER 53 U ALA 54 n 41 ALA 54 U THR 55 n 42 THR 55 U ARG 56 n 43 ARG 56 U TYR 57 n 44 TYR 57 U TYR 58 n 45 TYR 58 U GLN 59 n 46 GLN 59 U VAL 60 n 47 VAL 60 U LEU 61 n 48 LEU 61 U ASN 62 n 49 ASN 62 U ALA 63 n 50 ALA 63 U LEU 64 n 51 LEU 64 U VAL 65 n 52 VAL 65 U ASP 66 n 53 ASP 66 U ARG 67 n 54 ARG 67 U PRO 68 n 55 PRO 68 U GLU 69 n 56 GLU 69 U ALA 70 n 57 ALA 70 U LEU 71 n 58 LEU 71 U ALA 72 n 59 ALA 72 U ALA 73 n 60 ALA 73 U ASP 74 n 61 ASP 74 U PRO 75 n 62 PRO 75 U MET 76 n 63 MET 76 U LEU 77 n 64 LEU 77 U VAL 78 n 65 VAL 78 U LYS 79 n 66 LYS 79 U ARG 80 n 67 ARG 80 U LEU 81 n 68 LEU 81 U ARG 82 n 69 ARG 82 U ARG 83 n 70 ARG 83 U LEU 84 n 71 LEU 84 U n 72 85 U n 73 86 U n 74 87 U n 75 88 U n 76 89 U n 77 90 U n 78 91 U n 79 92 U n 80 93 U n 81 94 U n 82 95 U n 83 96 U n 84 97 U n 85 98 U n 86 99 U n 87 100 U n 88 101 U n 89 102 U n 1 14 A n 2 15 A n 3 16 A n 4 17 A n 5 18 A n 6 19 A n 7 20 A n 8 21 A THR 22 n 9 THR 22 A ARG 23 n 10 ARG 23 A ARG 24 n 11 ARG 24 A GLU 25 n 12 GLU 25 A HIS 26 n 13 HIS 26 A ASP 27 n 14 ASP 27 A ILE 28 n 15 ILE 28 A LEU 29 n 16 LEU 29 A ALA 30 n 17 ALA 30 A PHE 31 n 18 PHE 31 A GLU 32 n 19 GLU 32 A ARG 33 n 20 ARG 33 A GLN 34 n 21 GLN 34 A TRP 35 n 22 TRP 35 A TRP 36 n 23 TRP 36 A LYS 37 n 24 LYS 37 A PHE 38 n 25 PHE 38 A ALA 39 n 26 ALA 39 A GLY 40 n 27 GLY 40 A VAL 41 n 28 VAL 41 A LYS 42 n 29 LYS 42 A GLU 43 n 30 GLU 43 A GLU 44 n 31 GLU 44 A ALA 45 n 32 ALA 45 A ILE 46 n 33 ILE 46 A LYS 47 n 34 LYS 47 A GLU 48 n 35 GLU 48 A LEU 49 n 36 LEU 49 A PHE 50 n 37 PHE 50 A SER 51 n 38 SER 51 A MET 52 n 39 MET 52 A SER 53 n 40 SER 53 A ALA 54 n 41 ALA 54 A THR 55 n 42 THR 55 A ARG 56 n 43 ARG 56 A TYR 57 n 44 TYR 57 A TYR 58 n 45 TYR 58 A GLN 59 n 46 GLN 59 A VAL 60 n 47 VAL 60 A LEU 61 n 48 LEU 61 A ASN 62 n 49 ASN 62 A ALA 63 n 50 ALA 63 A LEU 64 n 51 LEU 64 A VAL 65 n 52 VAL 65 A ASP 66 n 53 ASP 66 A ARG 67 n 54 ARG 67 A PRO 68 n 55 PRO 68 A GLU 69 n 56 GLU 69 A ALA 70 n 57 ALA 70 A LEU 71 n 58 LEU 71 A ALA 72 n 59 ALA 72 A ALA 73 n 60 ALA 73 A ASP 74 n 61 ASP 74 A PRO 75 n 62 PRO 75 A MET 76 n 63 MET 76 A LEU 77 n 64 LEU 77 A VAL 78 n 65 VAL 78 A LYS 79 n 66 LYS 79 A ARG 80 n 67 ARG 80 A LEU 81 n 68 LEU 81 A ARG 82 n 69 ARG 82 A ARG 83 n 70 ARG 83 A LEU 84 n 71 LEU 84 A ARG 85 n 72 ARG 85 A ALA 86 n 73 ALA 86 A SER 87 n 74 SER 87 A ARG 88 n 75 ARG 88 A GLN 89 n 76 GLN 89 A n 77 90 A n 78 91 A n 79 92 A n 80 93 A n 81 94 A n 82 95 A n 83 96 A n 84 97 A n 85 98 A n 86 99 A n 87 100 A n 88 101 A n 89 102 A n 1 16 E n 2 17 E n 3 18 E n 4 19 E n 5 20 E DT 21 n 6 DT 21 E DA 22 n 7 DA 22 E DA 23 n 8 DA 23 E DT 24 n 9 DT 24 E DT 25 n 10 DT 25 E DA 26 n 11 DA 26 E DA 27 n 12 DA 27 E DT 28 n 13 DT 28 E n 14 29 E n 15 30 E n 16 31 E n 17 32 E n 18 33 E n 19 34 E n 20 35 E n 1 18 F n 2 19 F n 3 20 F n 4 21 F n 5 22 F DT 23 n 6 DT 23 F DA 24 n 7 DA 24 F DA 25 n 8 DA 25 F DT 26 n 9 DT 26 F DT 27 n 10 DT 27 F n 11 28 F n 12 29 F n 13 30 F n 14 31 F n 15 32 F n 16 33 F n 17 34 F n 18 35 F n 19 36 F n 20 37 F -0.7405 2.8405 -3.6302 3.0521 -1.5507 7.4062 -0.6158 0.4034 -0.4759 -0.5284 1.3687 -0.1170 -0.2192 0.2546 -1.1062 1.7617 0.1539 0.3974 2.0840 -0.0608 2.6307 refined -14.1335 -1.1847 -32.4392 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 all author_defined_assembly 6 hexameric mass spectrometry 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_554 -y,-x,-z-1 crystal symmetry operation 0.0000000000 0.0000000000 -107.3920000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 16_444 -y-1/2,-x-1/2,-z-1/2 crystal symmetry operation -46.0155000000 -46.0155000000 -53.6960000000 1 U CG LEU 21 A CG LEU 8 1 Y 1 U CD1 LEU 21 A CD1 LEU 8 1 Y 1 U CD2 LEU 21 A CD2 LEU 8 1 Y 1 U CG ARG 23 A CG ARG 10 1 Y 1 U CD ARG 23 A CD ARG 10 1 Y 1 U NE ARG 23 A NE ARG 10 1 Y 1 U CZ ARG 23 A CZ ARG 10 1 Y 1 U NH1 ARG 23 A NH1 ARG 10 1 Y 1 U NH2 ARG 23 A NH2 ARG 10 1 Y 1 U CG LYS 42 A CG LYS 29 1 Y 1 U CD LYS 42 A CD LYS 29 1 Y 1 U CE LYS 42 A CE LYS 29 1 Y 1 U NZ LYS 42 A NZ LYS 29 1 Y 1 U CG ARG 56 A CG ARG 43 1 Y 1 U CD ARG 56 A CD ARG 43 1 Y 1 U NE ARG 56 A NE ARG 43 1 Y 1 U CZ ARG 56 A CZ ARG 43 1 Y 1 U NH1 ARG 56 A NH1 ARG 43 1 Y 1 U NH2 ARG 56 A NH2 ARG 43 1 Y 1 A CG ARG 23 B CG ARG 10 1 Y 1 A CD ARG 23 B CD ARG 10 1 Y 1 A NE ARG 23 B NE ARG 10 1 Y 1 A CZ ARG 23 B CZ ARG 10 1 Y 1 A NH1 ARG 23 B NH1 ARG 10 1 Y 1 A NH2 ARG 23 B NH2 ARG 10 1 Y 1 A CG ARG 24 B CG ARG 11 1 Y 1 A CD ARG 24 B CD ARG 11 1 Y 1 A NE ARG 24 B NE ARG 11 1 Y 1 A CZ ARG 24 B CZ ARG 11 1 Y 1 A NH1 ARG 24 B NH1 ARG 11 1 Y 1 A NH2 ARG 24 B NH2 ARG 11 1 Y 1 A CG ARG 33 B CG ARG 20 1 Y 1 A CD ARG 33 B CD ARG 20 1 Y 1 A NE ARG 33 B NE ARG 20 1 Y 1 A CZ ARG 33 B CZ ARG 20 1 Y 1 A NH1 ARG 33 B NH1 ARG 20 1 Y 1 A NH2 ARG 33 B NH2 ARG 20 1 Y 1 A CG GLN 59 B CG GLN 46 1 Y 1 A CD GLN 59 B CD GLN 46 1 Y 1 A OE1 GLN 59 B OE1 GLN 46 1 Y 1 A NE2 GLN 59 B NE2 GLN 46 1 Y 1 A CG GLU 69 B CG GLU 56 1 Y 1 A CD GLU 69 B CD GLU 56 1 Y 1 A OE1 GLU 69 B OE1 GLU 56 1 Y 1 A OE2 GLU 69 B OE2 GLU 56 1 Y 1 A CG ARG 82 B CG ARG 69 1 Y 1 A CD ARG 82 B CD ARG 69 1 Y 1 A NE ARG 82 B NE ARG 69 1 Y 1 A CZ ARG 82 B CZ ARG 69 1 Y 1 A NH1 ARG 82 B NH1 ARG 69 1 Y 1 A NH2 ARG 82 B NH2 ARG 69 1 Y 1 E P DT 21 C P DT 6 1 Y 1 E OP1 DT 21 C OP1 DT 6 1 Y 1 E OP2 DT 21 C OP2 DT 6 1 Y 1 F P DT 23 D P DT 6 1 Y 1 F OP1 DT 23 D OP1 DT 6 1 Y 1 F OP2 DT 23 D OP2 DT 6 1 Y 1 U GLY 14 A GLY 1 1 Y 1 U SER 15 A SER 2 1 Y 1 U HIS 16 A HIS 3 1 Y 1 U MET 17 A MET 4 1 Y 1 U ALA 18 A ALA 5 1 Y 1 U ASP 19 A ASP 6 1 Y 1 U GLY 20 A GLY 7 1 Y 1 U ARG 85 A ARG 72 1 Y 1 U ALA 86 A ALA 73 1 Y 1 U SER 87 A SER 74 1 Y 1 U ARG 88 A ARG 75 1 Y 1 U GLN 89 A GLN 76 1 Y 1 U LYS 90 A LYS 77 1 Y 1 U ALA 91 A ALA 78 1 Y 1 U ARG 92 A ARG 79 1 Y 1 U ALA 93 A ALA 80 1 Y 1 U ALA 94 A ALA 81 1 Y 1 U ARG 95 A ARG 82 1 Y 1 U ARG 96 A ARG 83 1 Y 1 U LEU 97 A LEU 84 1 Y 1 U GLY 98 A GLY 85 1 Y 1 U PHE 99 A PHE 86 1 Y 1 U GLU 100 A GLU 87 1 Y 1 U VAL 101 A VAL 88 1 Y 1 U THR 102 A THR 89 1 Y 1 A GLY 14 B GLY 1 1 Y 1 A SER 15 B SER 2 1 Y 1 A HIS 16 B HIS 3 1 Y 1 A MET 17 B MET 4 1 Y 1 A ALA 18 B ALA 5 1 Y 1 A ASP 19 B ASP 6 1 Y 1 A GLY 20 B GLY 7 1 Y 1 A LEU 21 B LEU 8 1 Y 1 A LYS 90 B LYS 77 1 Y 1 A ALA 91 B ALA 78 1 Y 1 A ARG 92 B ARG 79 1 Y 1 A ALA 93 B ALA 80 1 Y 1 A ALA 94 B ALA 81 1 Y 1 A ARG 95 B ARG 82 1 Y 1 A ARG 96 B ARG 83 1 Y 1 A LEU 97 B LEU 84 1 Y 1 A GLY 98 B GLY 85 1 Y 1 A PHE 99 B PHE 86 1 Y 1 A GLU 100 B GLU 87 1 Y 1 A VAL 101 B VAL 88 1 Y 1 A THR 102 B THR 89 1 Y 1 E DA 16 C DA 1 1 Y 1 E DT 17 C DT 2 1 Y 1 E DT 18 C DT 3 1 Y 1 E DA 19 C DA 4 1 Y 1 E DT 20 C DT 5 1 Y 1 E DT 29 C DT 14 1 Y 1 E DA 30 C DA 15 1 Y 1 E DA 31 C DA 16 1 Y 1 E DT 32 C DT 17 1 Y 1 E DA 33 C DA 18 1 Y 1 E DA 34 C DA 19 1 Y 1 E DT 35 C DT 20 1 Y 1 F DA 18 D DA 1 1 Y 1 F DT 19 D DT 2 1 Y 1 F DT 20 D DT 3 1 Y 1 F DA 21 D DA 4 1 Y 1 F DT 22 D DT 5 1 Y 1 F DA 28 D DA 11 1 Y 1 F DA 29 D DA 12 1 Y 1 F DT 30 D DT 13 1 Y 1 F DT 31 D DT 14 1 Y 1 F DA 32 D DA 15 1 Y 1 F DA 33 D DA 16 1 Y 1 F DT 34 D DT 17 1 Y 1 F DA 35 D DA 18 1 Y 1 F DA 36 D DA 19 1 Y 1 F DT 37 D DT 20 1 Y 1 E E O4 N6 DT DA 24 27 2.04 1_555 16_444 1 E E N3 N6 DT DA 24 27 2.19 1_555 16_444 0.3278 0.2999 0.3066 3.87 38.43 109 2283 4.77 98.11 0.00 1 THROUGHOUT 1.34 MOLECULAR REPLACEMENT 45.90 0.90 1.10 ML FLAT BULK SOLVENT MODEL 3.87 38.43 0 1321 0 260 1061 0.005 1373 0.612 1908 23.295 518 0.038 212 0.005 198 0.3251 0.3066 38.43 109 2174 98.00 3.87 41.42 9N2N 2285 0.999 0.022 0.051 1 13. 6.6 100 3.87 4.08 0.2 325 0.749 1.55 1.9 1 refinement PHENIX (1.20.1_4487: ???) data reduction XDS data scaling Aimless phasing MOLREP N Structure of M tuberculosis NapA bound to 20mer AT rich DNA 1 N N 1 N N 2 N N 2 N N U LEU 21 A LEU 8 HELX_P U SER 51 A SER 38 1 AA1 31 U SER 53 A SER 40 HELX_P U ASP 66 A ASP 53 1 AA2 14 U ARG 67 A ARG 54 HELX_P U ASP 74 A ASP 61 1 AA3 8 U ASP 74 A ASP 61 HELX_P U ARG 83 A ARG 70 1 AA4 10 A ARG 23 B ARG 10 HELX_P A PHE 50 B PHE 37 1 AA5 28 A SER 53 B SER 40 HELX_P A ASP 66 B ASP 53 1 AA6 14 A ARG 67 B ARG 54 HELX_P A ASP 74 B ASP 61 1 AA7 8 A ASP 74 B ASP 61 HELX_P A GLN 89 B GLN 76 1 AA8 16 hydrog WATSON-CRICK E DA 23 C N1 DA 8 1_555 E DT 28 C N3 DT 13 16_444 hydrog WATSON-CRICK E DA 23 C N6 DA 8 1_555 E DT 28 C O4 DT 13 16_444 hydrog DT-DA PAIR E DT 24 C N3 DT 9 1_555 E DA 27 C N1 DA 12 16_444 hydrog DT-DA PAIR E DT 25 C O4 DT 10 1_555 E DA 26 C N6 DA 11 16_444 hydrog DT-DA PAIR E DT 25 C N3 DT 10 1_555 E DA 27 C N1 DA 12 16_444 hydrog DA-DT PAIR E DA 26 C N6 DA 11 1_555 E DT 25 C O4 DT 10 16_444 hydrog DA-DT PAIR E DA 27 C N1 DA 12 1_555 E DT 24 C N3 DT 9 16_444 hydrog DA-DT PAIR E DA 27 C N1 DA 12 1_555 E DT 25 C N3 DT 10 16_444 hydrog WATSON-CRICK E DT 28 C N3 DT 13 1_555 E DA 23 C N1 DA 8 16_444 hydrog WATSON-CRICK E DT 28 C O4 DT 13 1_555 E DA 23 C N6 DA 8 16_444 DNA BINDING PROTEIN/DNA NAP, DNA bridging, Nucleoid, M tuberculosis, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex A0A045J292_MYCTX UNP 1 18 A0A045J292 ADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRL GFEVT 9N2N PDB 2 1 9N2N 18 102 9N2N 18 102 A0A045J292 U 1 5 89 18 102 9N2N 18 102 A0A045J292 A 1 5 89 16 35 9N2N 16 35 9N2N E 2 1 20 18 37 9N2N 18 37 9N2N F 2 1 20 1 expression tag GLY 14 9N2N U A0A045J292 UNP 1 1 expression tag SER 15 9N2N U A0A045J292 UNP 2 1 expression tag HIS 16 9N2N U A0A045J292 UNP 3 1 expression tag MET 17 9N2N U A0A045J292 UNP 4 2 expression tag GLY 14 9N2N A A0A045J292 UNP 1 2 expression tag SER 15 9N2N A A0A045J292 UNP 2 2 expression tag HIS 16 9N2N A A0A045J292 UNP 3 2 expression tag MET 17 9N2N A A0A045J292 UNP 4 98 I 41 2 2