0.011840 0.006836 0.000000 0.000000 0.013671 0.000000 0.000000 0.000000 0.009318 0.00000 0.00000 0.00000 Tai, X.Q. Ren, A.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 84.462 84.462 107.316 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C24 H23 N2 O3 1 387.451 [9-(2-carboxyphenyl)-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium 9-(2-carboxyphenyl)-3,6-bis(dimethylamino)xanthylium non-polymer C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C10 H15 N5 O11 P2 443.201 n GUANOSINE-5'-DIPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer Se 78.960 SELENIUM ATOM non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N C N 39 N C N 40 N C N 41 N C N 42 N C N 43 N C Y 44 N C Y 45 N C Y 46 N C Y 47 N C Y 48 N C N 49 N C Y 50 N C Y 51 N C Y 52 N C Y 53 N C N 54 N C N 55 N C Y 56 N C Y 57 N C N 58 N C N 59 N C N 60 N C Y 61 N C N 62 N N N 63 N N N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N O N 91 N P N 92 N O N 93 N O N 94 N O N 95 N C N 96 R C N 97 N O N 98 S C N 99 N O N 100 R C N 101 N O N 102 R C N 103 N N N 104 N C N 105 N O N 106 N N N 107 N C N 108 N N N 109 N C N 110 N C N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N O N 126 N P N 127 N O N 128 N O N 129 N O N 130 N C N 131 R C N 132 N O N 133 S C N 134 N O N 135 R C N 136 N O N 137 R C Y 138 N N Y 139 N C Y 140 N N Y 141 N C N 142 N C N 143 N O N 144 N N N 145 N C N 146 N N N 147 N N Y 148 N C N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N P N 164 N O N 165 N O N 166 N O N 167 N O N 168 N P N 169 N O N 170 N O N 171 N O N 172 N C N 173 R C N 174 N O N 175 S C N 176 N O N 177 R C N 178 N O N 179 R C Y 180 N N Y 181 N C Y 182 N N Y 183 N C N 184 N C N 185 N O N 186 N N N 187 N C N 188 N N N 189 N N Y 190 N C N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N O N 207 N H N 208 N H N 209 N MG N 210 N SE N 211 N O N 212 N P N 213 N O N 214 N O N 215 N O N 216 N C N 217 R C N 218 N O N 219 S C N 220 N O N 221 R C N 222 N O N 223 R C N 224 N N N 225 N C N 226 N O N 227 N N N 228 N C N 229 N O N 230 N C N 231 N C N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing Y 40 N doub Y 41 N sing Y 42 N sing Y 43 N doub Y 44 N doub N 45 N doub N 46 N sing Y 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N doub N 53 N sing N 54 N sing N 55 N doub N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N doub N 61 N sing Y 62 N doub Y 63 N sing Y 64 N sing N 65 N sing Y 66 N doub Y 67 N doub Y 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing Y 155 N sing Y 156 N sing Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing Y 161 N doub N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing Y 200 N sing Y 201 N sing Y 202 N doub N 203 N sing Y 204 N sing N 205 N sing Y 206 N doub N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N doub N 251 N sing N 252 N sing To Be Published 0353 Crystal structure of RhoBAST aptamer in complex with TMR 10.2210/pdb9l8f/pdb pdb_00009l8f 100 1 N PIXEL 2023-03-25 DECTRIS EIGER2 S 9M SINGLE WAVELENGTH M x-ray 1 0.9792 1.0 BL02U1 SSRF 0.9792 SYNCHROTRON SSRF BEAMLINE BL02U1 18574.088 RNA (57-MER) 1 man polymer 78.960 SELENIUM ATOM 7 syn non-polymer 387.451 [9-(2-carboxyphenyl)-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium 1 syn non-polymer 24.305 MAGNESIUM ION 3 syn non-polymer 18.015 water 10 nat water no yes (GDP)GAACCUCCGCCGAAAGGCGGUGAAGGAGAGGCGCAAGGUUAACCGCCUCAGGUUCC GGAACCUCCGCCGAAAGGCGGUGAAGGAGAGGCGCAAGGUUAACCGCCUCAGGUUCC U polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 57 32630 synthetic construct 905931 in vitro transcription vector pT7-TP(deltai) Biological sequence 1 3.13 58.65 VAPOR DIFFUSION, SITTING DROP 0.01 M Magnesium sulfate heptahydrate, 0.05 M Sodium cacodylate trihydrate pH 7.1, 2.2 M Ammonium sulfate 289 -2.639 1 19 U 1 U 57 -13.718 U_GDP1:C57_U 1 -18.556 0.145 0.027 0.127 -12.143 1 19 U 2 U 56 -3.902 U_G2:C56_U 2 -16.989 0.265 0.306 -0.150 -1.007 1 20 U 3 U 55 0.799 U_A3:U55_U 3 -19.402 -1.041 0.547 -0.492 -5.983 1 20 U 4 U 54 -15.937 U_A4:U54_U 4 -19.893 0.898 -0.055 -0.114 4.132 1 19 U 5 U 53 6.278 U_C5:G53_U 5 -19.588 0.543 -0.101 0.028 -2.792 1 19 U 6 U 52 4.138 U_C6:G52_U 6 -19.186 0.668 0.250 -0.099 -0.939 1 20 U 7 U 51 -8.403 U_U7:A51_U 7 -5.671 -0.050 0.086 0.030 -1.039 1 19 U 29 U 50 -1.518 U_G29:C50_U 8 -8.532 -0.094 -0.307 -0.393 -10.571 1 20 U 30 U 49 12.811 U_A30:U49_U 9 -12.339 -0.361 0.195 0.071 -9.362 1 19 U 31 U 48 -2.696 U_G31:C48_U 10 -12.181 0.183 0.116 -0.236 -14.529 U 32 U 47 -81.750 U_G32:C47_U 11 -6.935 0.297 0.320 4.670 1.298 1 19 U 33 U 46 -2.095 U_C33:G46_U 12 -16.467 -0.222 0.226 -0.223 0.118 1 19 U 34 U 45 2.562 U_G34:C45_U 13 -14.787 0.028 0.104 -0.288 -8.911 1 19 U 35 U 27 2.576 U_C35:G27_U 14 -1.372 0.629 0.159 -0.490 -12.930 10 11 U 16 U 13 -13.564 U_A16:G13_U 15 0.578 -6.819 0.593 -4.641 -1.102 1 19 U 17 U 12 1.360 U_G17:C12_U 16 -3.632 0.250 -0.005 0.001 -0.005 1 19 U 18 U 11 -1.007 U_G18:C11_U 17 -12.818 -0.239 0.008 -0.251 0.642 1 19 U 19 U 10 -0.980 U_C19:G10_U 18 -14.352 0.345 0.163 -0.181 -4.062 1 19 U 20 U 9 0.838 U_G20:C9_U 19 -14.239 0.384 0.229 -0.075 -9.158 1 19 U 21 U 8 0.074 U_G21:C8_U 20 -18.509 -0.416 0.254 0.084 -15.164 1 20 U 22 U 28 -3.091 U_U22:A28_U 21 -8.148 0.386 0.592 -0.229 -20.388 1 19 U 23 U 44 -5.265 U_G23:C44_U 22 6.626 -0.196 -0.453 -0.032 -23.628 9 11 U 26 U 43 2.493 U_G26:A43_U 23 -21.630 6.500 0.453 -3.733 -4.857 4 5 U 24 U 42 -108.716 U_A24:A42_U 24 0.023 4.149 0.464 1.135 18.903 5 U 39 U 41 119.782 U_G39:U41_U 25 56.036 3.326 -1.318 1.816 2.319 37.778 U U 1 2 20.915 U U 57 56 3.343 13.206 -0.189 -2.383 UU_GDP1G2:C56C57_UU 1 -6.601 10.454 34.871 -5.219 -0.476 2.833 24.695 U U 2 3 5.853 U U 56 55 3.008 2.497 0.221 -1.363 UU_G2A3:U55C56_UU 2 -1.819 4.264 24.504 -3.869 -1.014 3.116 43.305 U U 3 4 10.465 U U 55 54 3.350 7.684 -1.288 -1.310 UU_A3A4:U54U55_UU 3 -1.327 1.807 42.631 -2.522 1.616 2.986 28.168 U U 4 5 6.358 U U 54 53 3.041 3.085 1.236 -1.170 UU_A4C5:G53U54_UU 4 2.249 -4.635 27.914 -3.071 -2.052 2.939 38.330 U U 5 6 14.372 U U 53 52 3.348 9.348 0.493 -1.353 UU_C5C6:G52G53_UU 5 0.271 -0.416 37.213 -3.203 -0.718 2.496 29.109 U U 6 7 17.080 U U 52 51 3.151 8.463 -0.688 -1.728 UU_C6U7:A51G52_UU 6 1.244 -2.511 27.850 -5.075 1.610 2.331 45.987 U U 7 29 18.070 U U 51 50 3.183 13.896 -1.436 -1.961 UU_U7G29:C50A51_UU 7 4.672 -6.075 43.708 -3.549 2.187 2.611 35.812 U U 29 30 14.163 U U 50 49 3.287 8.619 0.649 -2.224 UU_G29A30:U49C50_UU 8 -3.114 5.118 34.657 -4.753 -1.466 2.777 34.078 U U 30 31 11.473 U U 49 48 3.192 6.682 -1.216 -1.763 UU_A30G31:C48U49_UU 9 0.586 -1.007 33.431 -3.988 2.162 2.491 73.476 U U 31 32 6.507 U U 48 47 2.724 7.767 0.947 -3.087 UU_G31G32:C47C48_UU 10 5.969 -5.000 72.912 -2.779 -0.639 2.448 -13.934 U U 32 33 -27.523 U U 47 46 3.336 6.422 -0.492 1.039 UU_G32C33:G46C47_UU 11 -0.886 -3.799 -12.341 -10.086 -2.830 2.592 33.080 U U 33 34 19.979 U U 46 45 3.229 11.140 0.937 -1.643 UU_C33G34:C45G46_UU 12 3.722 -6.675 30.979 -4.619 -1.066 3.728 53.898 U U 34 35 -6.647 U U 45 27 3.449 -6.005 2.198 -1.037 UU_G34C35:G27C45_UU 13 5.444 -6.026 53.330 -0.733 -2.052 3.047 50.134 U U 16 17 5.229 U U 13 12 3.064 4.425 1.926 -1.082 UU_A16G17:C12G13_UU 14 2.393 -2.828 49.897 -1.575 -2.112 3.005 28.424 U U 17 18 8.035 U U 12 11 3.267 3.933 -0.609 -1.792 UU_G17G18:C11C12_UU 15 -0.516 1.055 28.151 -4.520 1.125 3.028 34.359 U U 18 19 9.168 U U 11 10 3.302 5.394 0.205 -1.566 UU_G18C19:G10C11_UU 16 0.842 -1.431 33.935 -3.472 -0.220 2.694 28.931 U U 19 20 14.982 U U 10 9 3.262 7.405 0.234 -1.862 UU_C19G20:C9G10_UU 17 0.576 -1.166 27.981 -5.247 -0.351 2.855 29.857 U U 20 21 11.347 U U 9 8 3.233 5.792 0.528 -1.900 UU_G20G21:C8C9_UU 18 4.214 -8.256 29.004 -4.826 -0.197 3.551 36.299 U U 21 22 -3.713 U U 8 28 3.477 -2.311 -0.638 -1.085 UU_G21U22:A28C8_UU 19 -0.873 1.402 36.218 -1.394 0.893 3.719 49.753 U U 22 23 2.408 U U 28 44 3.220 1.987 2.034 0.229 UU_U22G23:C44A28_UU 20 17.479 -21.180 46.725 0.112 -1.010 3.470 70.036 U U 23 26 25.883 U U 44 43 3.852 28.978 0.094 -0.281 UU_G23G26:A43C44_UU 21 6.553 -5.853 64.164 -1.468 0.194 2.898 -11.807 U U 26 24 -8.184 U U 43 42 2.987 1.678 -2.100 0.144 UU_G26A24:A42A43_UU 22 -0.215 -1.049 -11.685 -2.737 -10.472 6.668 129.112 U U 24 39 -11.928 U U 42 41 6.654 -21.488 0.986 0.196 UU_A24G39:U41A42_UU 23 19.879 -11.035 127.276 0.446 -0.233 repository Initial release 1 0 2026-07-01 China National Natural Science Foundation of China (NSFC) aimingren@zju.edu.cn 0000-0002-5420-4899 Aiming Ren principal investigator/group leader N PDBJ N PDBC 2024-12-27 REL REL A1EI4 A1EI4 SUBJECT OF INVESTIGATION SE SELENIUM ATOM A1EI4 [9-(2-carboxyphenyl)-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium MG MAGNESIUM ION HOH water Y N SE 21 2 SE SE 101 U SE 22 2 SE SE 102 U SE 23 2 SE SE 103 U SE 24 2 SE SE 104 U SE 25 2 SE SE 105 U SE 26 2 SE SE 106 U SE 27 2 SE SE 107 U TMR 1 3 A1EI4 A1EI4 108 U MG 1 4 MG MG 109 U MG 2 4 MG MG 110 U MG 3 4 MG MG 111 U HOH 31 5 HOH HOH 201 U HOH 26 5 HOH HOH 202 U HOH 27 5 HOH HOH 203 U HOH 24 5 HOH HOH 204 U HOH 28 5 HOH HOH 205 U HOH 29 5 HOH HOH 206 U HOH 30 5 HOH HOH 207 U HOH 25 5 HOH HOH 208 U HOH 11 5 HOH HOH 209 U HOH 23 5 HOH HOH 210 U GDP 1 n 1 GDP 1 U G 2 n 2 G 2 U A 3 n 3 A 3 U A 4 n 4 A 4 U C 5 n 5 C 5 U C 6 n 6 C 6 U U 7 n 7 U 7 U C 8 n 8 C 8 U C 9 n 9 C 9 U G 10 n 10 G 10 U C 11 n 11 C 11 U C 12 n 12 C 12 U G 13 n 13 G 13 U A 14 n 14 A 14 U A 15 n 15 A 15 U A 16 n 16 A 16 U G 17 n 17 G 17 U G 18 n 18 G 18 U C 19 n 19 C 19 U G 20 n 20 G 20 U G 21 n 21 G 21 U U 22 n 22 U 22 U G 23 n 23 G 23 U A 24 n 24 A 24 U A 25 n 25 A 25 U G 26 n 26 G 26 U G 27 n 27 G 27 U A 28 n 28 A 28 U G 29 n 29 G 29 U A 30 n 30 A 30 U G 31 n 31 G 31 U G 32 n 32 G 32 U C 33 n 33 C 33 U G 34 n 34 G 34 U C 35 n 35 C 35 U A 36 n 36 A 36 U A 37 n 37 A 37 U G 38 n 38 G 38 U G 39 n 39 G 39 U U 40 n 40 U 40 U U 41 n 41 U 41 U A 42 n 42 A 42 U A 43 n 43 A 43 U C 44 n 44 C 44 U C 45 n 45 C 45 U G 46 n 46 G 46 U C 47 n 47 C 47 U C 48 n 48 C 48 U U 49 n 49 U 49 U C 50 n 50 C 50 U A 51 n 51 A 51 U G 52 n 52 G 52 U G 53 n 53 G 53 U U 54 n 54 U 54 U U 55 n 55 U 55 U C 56 n 56 C 56 U C 57 n 57 C 57 U author_and_software_defined_assembly PISA 2 dimeric none 3430 -104 19460 U U 7 A OP1 U 7 1_555 U MG 109 J MG MG 1_555 U U 7 A OP2 U 7 1_555 64.4 U G 27 A OP1 G 27 1_555 U MG 111 L MG MG 1_555 U G 27 A O5' G 27 1_555 75.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 10_666 -y+1,-x+1,-z+7/6 crystal symmetry operation 42.2310000000 73.1462376544 125.2020000000 1 U SE 105 F SE 1 U U O3' MG G MG 26 111 1.69 1 U U N3 O G HOH 38 201 1.99 1 U U N3 O G HOH 21 202 2.12 1 U U O2' O C HOH 6 203 2.17 1 -19.63 1.20 119.70 100.07 U U U C3' O3' P GDP GDP G 1 1 2 Y 1 26.87 1.90 104.00 130.87 U U U O3' P O5' GDP G G 1 2 2 Y 1 -20.01 2.20 105.20 85.19 U U U O3' P OP1 GDP G G 1 2 2 Y 0.2600 0.2294 0.2312 2.51 30.22 660 13843 4.77 94.45 1 THROUGHOUT 1.34 SAD 34.31 0.90 1.10 ML FLAT BULK SOLVENT MODEL 2.51 30.22 10 1282 39 1233 0 0.007 1.262 16.537 706 0.059 284 0.009 75 0.6127 0.5393 2.65 120 2061 99.00 0.3813 0.38 2.98 138 2734 100.00 0.2923 0.2853 3.41 125 2810 100.00 0.2822 0.2259 4.29 141 2777 100.00 0.1895 0.1619 30.22 136 2801 100.00 2.51 43.27 9L8F 36717 0.072 1 41.1 35.5 94.5 2.51 2.65 36717 0.818 1 refinement PHENIX (1.20.1_4487) data scaling XDS data reduction XDS phasing PHENIX N Crystal structure of RhoBAST aptamer in complex with TMR 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 4 N N 4 N N 4 N N 5 N N covale 1.558 both U GDP 1 A O3' GDP 1 1_555 U G 2 A P G 2 1_555 metalc 1.785 U C 6 A OP2 C 6 1_555 U MG 110 K MG MG 1_555 metalc 2.646 U U 7 A OP1 U 7 1_555 U MG 109 J MG MG 1_555 metalc 2.143 U U 7 A OP2 U 7 1_555 U MG 109 J MG MG 1_555 metalc 1.923 U G 27 A OP1 G 27 1_555 U MG 111 L MG MG 1_555 metalc 2.203 U G 27 A O5' G 27 1_555 U MG 111 L MG MG 1_555 hydrog WATSON-CRICK U GDP 1 A N1 GDP 1 1_555 U C 57 A N3 C 57 1_555 hydrog WATSON-CRICK U GDP 1 A N2 GDP 1 1_555 U C 57 A O2 C 57 1_555 hydrog WATSON-CRICK U GDP 1 A O6 GDP 1 1_555 U C 57 A N4 C 57 1_555 hydrog WATSON-CRICK U G 2 A N1 G 2 1_555 U C 56 A N3 C 56 1_555 hydrog WATSON-CRICK U G 2 A N2 G 2 1_555 U C 56 A O2 C 56 1_555 hydrog WATSON-CRICK U G 2 A O6 G 2 1_555 U C 56 A N4 C 56 1_555 hydrog WATSON-CRICK U A 3 A N1 A 3 1_555 U U 55 A N3 U 55 1_555 hydrog WATSON-CRICK U A 3 A N6 A 3 1_555 U U 55 A O4 U 55 1_555 hydrog WATSON-CRICK U A 4 A N1 A 4 1_555 U U 54 A N3 U 54 1_555 hydrog WATSON-CRICK U A 4 A N6 A 4 1_555 U U 54 A O4 U 54 1_555 hydrog WATSON-CRICK U C 5 A N3 C 5 1_555 U G 53 A N1 G 53 1_555 hydrog WATSON-CRICK U C 5 A N4 C 5 1_555 U G 53 A O6 G 53 1_555 hydrog WATSON-CRICK U C 5 A O2 C 5 1_555 U G 53 A N2 G 53 1_555 hydrog WATSON-CRICK U C 6 A N3 C 6 1_555 U G 52 A N1 G 52 1_555 hydrog WATSON-CRICK U C 6 A N4 C 6 1_555 U G 52 A O6 G 52 1_555 hydrog WATSON-CRICK U C 6 A O2 C 6 1_555 U G 52 A N2 G 52 1_555 hydrog WATSON-CRICK U U 7 A N3 U 7 1_555 U A 51 A N1 A 51 1_555 hydrog WATSON-CRICK U U 7 A O4 U 7 1_555 U A 51 A N6 A 51 1_555 hydrog WATSON-CRICK U C 8 A N3 C 8 1_555 U G 21 A N1 G 21 1_555 hydrog WATSON-CRICK U C 8 A N4 C 8 1_555 U G 21 A O6 G 21 1_555 hydrog WATSON-CRICK U C 8 A O2 C 8 1_555 U G 21 A N2 G 21 1_555 hydrog WATSON-CRICK U C 9 A N3 C 9 1_555 U G 20 A N1 G 20 1_555 hydrog WATSON-CRICK U C 9 A N4 C 9 1_555 U G 20 A O6 G 20 1_555 hydrog WATSON-CRICK U C 9 A O2 C 9 1_555 U G 20 A N2 G 20 1_555 hydrog WATSON-CRICK U G 10 A N1 G 10 1_555 U C 19 A N3 C 19 1_555 hydrog WATSON-CRICK U G 10 A N2 G 10 1_555 U C 19 A O2 C 19 1_555 hydrog WATSON-CRICK U G 10 A O6 G 10 1_555 U C 19 A N4 C 19 1_555 hydrog WATSON-CRICK U C 11 A N3 C 11 1_555 U G 18 A N1 G 18 1_555 hydrog WATSON-CRICK U C 11 A N4 C 11 1_555 U G 18 A O6 G 18 1_555 hydrog WATSON-CRICK U C 11 A O2 C 11 1_555 U G 18 A N2 G 18 1_555 hydrog WATSON-CRICK U C 12 A N3 C 12 1_555 U G 17 A N1 G 17 1_555 hydrog WATSON-CRICK U C 12 A N4 C 12 1_555 U G 17 A O6 G 17 1_555 hydrog WATSON-CRICK U C 12 A O2 C 12 1_555 U G 17 A N2 G 17 1_555 hydrog TYPE_11_PAIR U G 13 A N2 G 13 1_555 U A 16 A N7 A 16 1_555 hydrog TYPE_11_PAIR U G 13 A N3 G 13 1_555 U A 16 A N6 A 16 1_555 hydrog WATSON-CRICK U U 22 A N3 U 22 1_555 U A 28 A N1 A 28 1_555 hydrog WATSON-CRICK U U 22 A O4 U 22 1_555 U A 28 A N6 A 28 1_555 hydrog WATSON-CRICK U G 23 A N1 G 23 1_555 U C 44 A N3 C 44 1_555 hydrog WATSON-CRICK U G 23 A N2 G 23 1_555 U C 44 A O2 C 44 1_555 hydrog WATSON-CRICK U G 23 A O6 G 23 1_555 U C 44 A N4 C 44 1_555 hydrog TYPE_5_PAIR U A 24 A N1 A 24 1_555 U A 42 A N6 A 42 1_555 hydrog TYPE_5_PAIR U A 24 A N6 A 24 1_555 U A 42 A N7 A 42 1_555 hydrog TYPE_11_PAIR U G 26 A N2 G 26 1_555 U A 43 A N7 A 43 1_555 hydrog TYPE_11_PAIR U G 26 A N3 G 26 1_555 U A 43 A N6 A 43 1_555 hydrog WATSON-CRICK U G 27 A N1 G 27 1_555 U C 35 A N3 C 35 1_555 hydrog WATSON-CRICK U G 27 A N2 G 27 1_555 U C 35 A O2 C 35 1_555 hydrog WATSON-CRICK U G 27 A O6 G 27 1_555 U C 35 A N4 C 35 1_555 hydrog WATSON-CRICK U G 29 A N1 G 29 1_555 U C 50 A N3 C 50 1_555 hydrog WATSON-CRICK U G 29 A N2 G 29 1_555 U C 50 A O2 C 50 1_555 hydrog WATSON-CRICK U G 29 A O6 G 29 1_555 U C 50 A N4 C 50 1_555 hydrog WATSON-CRICK U A 30 A N1 A 30 1_555 U U 49 A N3 U 49 1_555 hydrog WATSON-CRICK U A 30 A N6 A 30 1_555 U U 49 A O4 U 49 1_555 hydrog WATSON-CRICK U G 31 A N1 G 31 1_555 U C 48 A N3 C 48 1_555 hydrog WATSON-CRICK U G 31 A N2 G 31 1_555 U C 48 A O2 C 48 1_555 hydrog WATSON-CRICK U G 31 A O6 G 31 1_555 U C 48 A N4 C 48 1_555 hydrog G-C PAIR U G 32 A O6 G 32 1_555 U C 47 A N4 C 47 1_555 hydrog WATSON-CRICK U C 33 A N3 C 33 1_555 U G 46 A N1 G 46 1_555 hydrog WATSON-CRICK U C 33 A N4 C 33 1_555 U G 46 A O6 G 46 1_555 hydrog WATSON-CRICK U C 33 A O2 C 33 1_555 U G 46 A N2 G 46 1_555 hydrog WATSON-CRICK U G 34 A N1 G 34 1_555 U C 45 A N3 C 45 1_555 hydrog WATSON-CRICK U G 34 A N2 G 34 1_555 U C 45 A O2 C 45 1_555 hydrog WATSON-CRICK U G 34 A O6 G 34 1_555 U C 45 A N4 C 45 1_555 hydrog G-U MISPAIR U G 39 A N3 G 39 1_555 U U 41 A N3 U 41 1_555 RNA Aptamer, RhoBAST, TMR, RNA 9L8F PDB 1 1 9L8F 1 57 9L8F 1 57 9L8F U 1 1 57 179 P 65 2 2