0.024177 0.013959 0.000000 0.000000 0.027917 0.000000 0.000000 0.000000 0.017607 0.000000 0.000000 0.000000 0000-0002-9724-6298 Kreutzer, A.G. 0000-0003-0063-6423 McKnelly, K.J. 0000-0002-2273-1029 Nowick, J.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.000 90.000 120.000 41.361 41.361 56.796 C3 H7 N O2 89.093 y ALANINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C10 H13 N O2 179.216 n N-METHYLPHENYLALANINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H12 N2 O2 132.161 n L-ornithine L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 N C N 16 N C N 17 N O N 18 N O N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N O N 25 N H N 26 N H N 27 N N N 28 S C N 29 N C N 30 N O N 31 S C N 32 N C N 33 N C N 34 N C N 35 N O N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N N N 50 S C N 51 N C N 52 N O N 53 N C N 54 N C N 55 N C N 56 N C N 57 N O N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N N N 72 S C N 73 N C N 74 N O N 75 N C N 76 N C N 77 N C N 78 N C N 79 N N N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N C N 97 N N N 98 S C N 99 N C N 100 N O N 101 N C Y 102 N C Y 103 N C Y 104 N C Y 105 N C Y 106 N C Y 107 N C N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N N N 123 S C N 124 N C N 125 N O N 126 N C N 127 N C N 128 N S N 129 N C N 130 N O N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N N N 143 S C N 144 N C N 145 N C N 146 N C N 147 N N N 148 N C N 149 N O N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C Y 168 N C Y 169 N C Y 170 N C Y 171 N C Y 172 N C Y 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing Y 104 N doub Y 105 N sing Y 106 N sing N 107 N sing Y 108 N doub N 109 N sing Y 110 N sing N 111 N sing Y 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing Y 166 N doub Y 167 N sing Y 168 N sing N 169 N sing Y 170 N doub N 171 N sing Y 172 N doub N 173 N sing Y 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing US Biochemistry BICHAW 0033 0006-2960 61 446 454 10.1021/acs.biochem.1c00664 35213141 Effects of Familial Alzheimer's Disease Mutations on the Assembly of a beta-Hairpin Peptide Derived from A beta 16-36 . 2022 10.2210/pdb7jqt/pdb pdb_00007jqt 123.15 1 N CCD 2017-09-15 RIGAKU SATURN 944+ SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE RIGAKU MICROMAX-007 HF 1794.337 Abeta 16-36 beta-hairpin mimic VAL-ORT-LYS-LEU-VAL-MEA-PHE-ALA-LYS-ORT-ALA-ILE-ILE-GLY-LEU-MET 1 syn polymer 18.015 water 13 nat water no yes V(ORN)KLV(MEA)FAK(ORN)AIIGLM VAKLVFFAKAAIIGLM A polypeptide(L) n n n n n n n n n n n n n n n n 1 2.57 52.10 VAPOR DIFFUSION, HANGING DROP sodium thiocyanate, PEG 3350 297.15 citation citation_author citation citation_author chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Database references Database references Data collection Refinement description 1 0 2021-09-08 1 1 2022-03-16 1 2 2022-03-30 1 3 2023-10-18 _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation.journal_volume _citation.page_first _citation.page_last _citation.title _citation_author.identifier_ORCID United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM097562 N RCSB Y RCSB 2020-08-11 REL REL HOH water 9606 Human Homo sapiens sample 1 16 N 7JQR PDB experimental model HOH 12 2 HOH HOH 101 A HOH 2 2 HOH HOH 102 A HOH 10 2 HOH HOH 103 A HOH 1 2 HOH HOH 104 A HOH 3 2 HOH HOH 105 A HOH 9 2 HOH HOH 106 A HOH 8 2 HOH HOH 107 A HOH 5 2 HOH HOH 108 A HOH 13 2 HOH HOH 109 A HOH 6 2 HOH HOH 110 A HOH 11 2 HOH HOH 111 A HOH 4 2 HOH HOH 112 A HOH 7 2 HOH HOH 113 A VAL 1 n 1 VAL 1 A ORN 2 n 2 ORN 2 A LYS 3 n 3 LYS 3 A LEU 4 n 4 LEU 4 A VAL 5 n 5 VAL 5 A MEA 6 n 6 MEA 6 A PHE 7 n 7 PHE 7 A ALA 8 n 8 ALA 8 A LYS 9 n 9 LYS 9 A ORN 10 n 10 ORN 10 A ALA 11 n 11 ALA 11 A ILE 12 n 12 ILE 12 A ILE 13 n 13 ILE 13 A GLY 14 n 14 GLY 14 A LEU 15 n 15 LEU 15 A MET 16 n 16 MET 16 A 4.8862 -0.9618 -1.3034 2.2425 2.1993 3.0239 0.1341 0.1831 0.4768 -0.1294 0.0457 -0.1931 -0.3784 0.0902 -0.2105 0.1767 -0.0102 -0.0011 0.1420 -0.0175 0.1746 refined 13.0503 58.5613 4.0722 X-RAY DIFFRACTION A 1 A 16 X-RAY DIFFRACTION 1 chain 'A' and (resid 1 through 16 ) author_and_software_defined_assembly PISA 6 hexameric none 4460 -34 6010 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_875 -y+3,x-y+2,z crystal symmetry operation 82.7220000000 71.6393534519 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_685 -x+y+1,-x+3,z crystal symmetry operation -20.6805000000 107.4590301778 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 10_455 y-1/3,x+1/3,-z+1/3 crystal symmetry operation -20.6805000000 11.9398922420 18.9320000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_685 x-y+5/3,-y+10/3,-z+1/3 crystal symmetry operation 0.0000000000 119.3989224198 18.9320000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_765 -x+8/3,-x+y+4/3,-z+1/3 crystal symmetry operation 82.7220000000 47.7595689679 18.9320000000 A N VAL 5 A N VAL 5 A O LEU 15 A O LEU 15 1 A A O O HOH HOH 111 112 2.01 1 A A O O HOH HOH 106 113 2.09 122.710 40.4363 11.400 0.2572 0.2023 0.2075 2.0800 17.0810 215 1944 2159 9.9600 98.3600 0.1900 1 THROUGHOUT 1.370 MOLECULAR REPLACEMENT 16.3400 0.9000 1.1100 7JQR ML FLAT BULK SOLVENT MODEL 2.0800 17.0810 13 138 43.60 0 0 125 16 0.2579 0.0000 0.1950 2.6194 110 990 100.0000 0.2569 0.0000 0.2060 17.0810 105 954 97.0000 2.08 17.0810 7JQT 2159 0.999 0.008785 1 112.71 40.7 97.63 0.008848 2.08 2.154 125 1 1 refinement PHENIX 1.13_2998 data extraction PDB_EXTRACT 3.25 data reduction XDS data scaling Aimless phasing PHENIX N Abeta 16-36 beta-hairpin mimic with E22K Italian mutation 1 N N 2 N N covale 1.378 both A VAL 1 A C VAL 1 1_555 A ORN 2 A NE ORN 2 1_555 covale 1.325 both sing A VAL 1 A N VAL 1 1_555 A MET 16 A C MET 16 1_555 covale 1.374 both A ORN 2 A C ORN 2 1_555 A LYS 3 A N LYS 3 1_555 covale 1.335 both A VAL 5 A C VAL 5 1_555 A MEA 6 A N MEA 6 1_555 covale 1.330 both A MEA 6 A C MEA 6 1_555 A PHE 7 A N PHE 7 1_555 covale 1.378 both A LYS 9 A C LYS 9 1_555 A ORN 10 A NE ORN 10 1_555 covale 1.369 both A ORN 10 A C ORN 10 1_555 A ALA 11 A N ALA 11 1_555 DE NOVO PROTEIN Alzheimer's disease, amyloid, Abeta, oligomer, familial mutant, DE NOVO PROTEIN 7JQT PDB 1 1 7JQT 1 16 7JQT 1 16 7JQT A 1 1 16 2 anti-parallel A VAL 5 A VAL 5 A PHE 7 A PHE 7 A ILE 13 A ILE 13 A LEU 15 A LEU 15 155 H 3 2