0.008528 0.000000 0.001605 0.000000 0.027586 0.000000 0.000000 0.000000 0.019762 0.00000 0.00000 0.00000 3.54356 2.42580 25.62398 1.50364 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.01032 2.96436 19.97189 1.75589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.49882 3.47563 15.80542 1.70748 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.55732 6.39887 1.23737 29.19336 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0000-0001-6094-7747 Wang, X.Y. 0009-0002-0707-9252 Tian, M.Z. 0000-0002-5029-9149 Zhou, J. 0000-0003-2633-0887 Xu, B.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 100.661 90.000 117.260 36.250 51.490 215089.377 C9 H13 N O5 S 247.268 methyl (~{E})-4-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]amino]-4-oxidanylidene-but-2-enoate non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N C N 3 N C N 4 N C N 5 R C N 6 N C N 7 N C N 8 N C N 9 N C N 10 N N N 11 N O N 12 N O N 13 N O N 14 N O N 15 N O N 16 N S N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N N N 31 S C N 32 N C N 33 N O N 34 N C N 35 N O N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N N N 44 S C N 45 N C N 46 N O N 47 N C N 48 N C N 49 N C N 50 N N N 51 N C N 52 N N N 53 N N N 54 N O N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N N N 71 S C N 72 N C N 73 N O N 74 N C N 75 N C N 76 N O N 77 N N N 78 N O N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N N N 88 S C N 89 N C N 90 N O N 91 N C N 92 N C N 93 N O N 94 N O N 95 N O N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N N N 104 R C N 105 N C N 106 N O N 107 N C N 108 N S N 109 N O N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N N N 118 S C N 119 N C N 120 N O N 121 N C N 122 N C N 123 N C N 124 N O N 125 N N N 126 N O N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C N 142 N C N 143 N C N 144 N O N 145 N O N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 N C N 158 N C N 159 N O N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C Y 171 N C Y 172 N N Y 173 N C Y 174 N C Y 175 N N N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N O N 188 N H N 189 N H N 190 N N N 191 S C N 192 N C N 193 N O N 194 S C N 195 N C N 196 N C N 197 N C N 198 N O N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 S C N 214 N C N 215 N O N 216 N C N 217 N C N 218 N C N 219 N C N 220 N O N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C N 239 N C N 240 N C N 241 N C N 242 N N N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N S N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C Y 284 N C Y 285 N C Y 286 N C Y 287 N C Y 288 N C Y 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C N 307 N C N 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C N 324 N O N 325 N O N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 R C N 338 N O N 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N N Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C N 388 N O N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C N 406 N C N 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N doub N 7 E doub N 8 N sing N 9 N sing N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N doub N 16 N doub N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N doub N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N doub N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N doub N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing Y 169 N sing Y 170 N doub Y 171 N doub N 172 N sing Y 173 N sing N 174 N sing Y 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing Y 277 N doub Y 278 N sing Y 279 N sing N 280 N sing Y 281 N doub N 282 N sing Y 283 N doub N 284 N sing Y 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing Y 346 N doub Y 347 N sing Y 348 N sing N 349 N sing Y 350 N doub Y 351 N sing Y 352 N sing N 353 N sing Y 354 N sing Y 355 N doub N 356 N sing Y 357 N doub N 358 N sing Y 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing To Be Published 0353 Crystal Structure of human Pin1 catalytic domain in complex with a covalent inhibitor 0000-0001-6094-7747 0009-0002-0707-9252 0000-0002-5029-9149 0000-0003-2633-0887 10.2210/pdb9jjs/pdb pdb_00009jjs 100 1 N PIXEL 2024-07-21 DECTRIS EIGER X 9M SINGLE WAVELENGTH M x-ray 1 0.979183 1.0 BL02U1 SSRF 0.979183 SYNCHROTRON SSRF BEAMLINE BL02U1 13402.892 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 5.2.1.8 catalytic domain 2 man polymer 247.268 methyl (~{E})-4-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]amino]-4-oxidanylidene-but-2-enoate 2 syn non-polymer 18.015 water 178 nat water Peptidyl-prolyl cis-trans isomerase Pin1,PPIase Pin1,Rotamase Pin1 no no GPGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDL GAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE GPGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDL GAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 1 121 PIN1 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 2.01 38.68 VAPOR DIFFUSION, HANGING DROP 8.0 (NH4)2SO4 0.2 M, Sodium citrate 1.2 M,HEPES 100 mM 7.5-8.5 291 repository Initial release 1 0 2026-03-25 China National Natural Science Foundation of China (NSFC) 82104009 wangxiaoyu@imm.ac.cn 0000-0001-6094-7747 Xiaoyu Wang principal investigator/group leader tianmz@imm.ac.cn 0009-0002-0707-9252 Meizhen Tian principal investigator/group leader N PDBJ N PDBC 2024-09-14 REL REL A1D9T A1D9T SUBJECT OF INVESTIGATION A1D9T methyl (~{E})-4-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]amino]-4-oxidanylidene-but-2-enoate HOH water Y Y 3JYJ PDB experimental model A A1D9T 200 Covalent chemical modification C4 C A1D9T A CYS 113 CYS SG A CYS 71 1_555 A1D9T 1 1_555 None B A1D9T 200 Covalent chemical modification C4 D A1D9T B CYS 113 CYS SG B CYS 71 1_555 A1D9T 1 1_555 None UNL 200 2 A1D9T A1D9T 200 A UNL 200 2 A1D9T A1D9T 200 B HOH 160 3 HOH HOH 301 A HOH 77 3 HOH HOH 302 A HOH 54 3 HOH HOH 303 A HOH 58 3 HOH HOH 304 A HOH 133 3 HOH HOH 305 A HOH 52 3 HOH HOH 306 A HOH 119 3 HOH HOH 307 A HOH 56 3 HOH HOH 308 A HOH 102 3 HOH HOH 309 A HOH 173 3 HOH HOH 310 A HOH 87 3 HOH HOH 311 A HOH 158 3 HOH HOH 312 A HOH 1 3 HOH HOH 313 A HOH 44 3 HOH HOH 314 A HOH 18 3 HOH HOH 315 A HOH 14 3 HOH HOH 316 A HOH 27 3 HOH HOH 317 A HOH 42 3 HOH HOH 318 A HOH 74 3 HOH HOH 319 A HOH 4 3 HOH HOH 320 A HOH 55 3 HOH HOH 321 A HOH 28 3 HOH HOH 322 A HOH 3 3 HOH HOH 323 A HOH 148 3 HOH HOH 324 A HOH 2 3 HOH HOH 325 A HOH 69 3 HOH HOH 326 A HOH 45 3 HOH HOH 327 A HOH 82 3 HOH HOH 328 A HOH 159 3 HOH HOH 329 A HOH 5 3 HOH HOH 330 A HOH 35 3 HOH HOH 331 A HOH 122 3 HOH HOH 332 A HOH 100 3 HOH HOH 333 A HOH 62 3 HOH HOH 334 A HOH 19 3 HOH HOH 335 A HOH 136 3 HOH HOH 336 A HOH 86 3 HOH HOH 337 A HOH 149 3 HOH HOH 338 A HOH 63 3 HOH HOH 339 A HOH 176 3 HOH HOH 340 A HOH 10 3 HOH HOH 341 A HOH 40 3 HOH HOH 342 A HOH 109 3 HOH HOH 343 A HOH 41 3 HOH HOH 344 A HOH 25 3 HOH HOH 345 A HOH 30 3 HOH HOH 346 A HOH 60 3 HOH HOH 347 A HOH 37 3 HOH HOH 348 A HOH 147 3 HOH HOH 349 A HOH 91 3 HOH HOH 350 A HOH 51 3 HOH HOH 351 A HOH 142 3 HOH HOH 352 A HOH 17 3 HOH HOH 353 A HOH 57 3 HOH HOH 354 A HOH 24 3 HOH HOH 355 A HOH 167 3 HOH HOH 356 A HOH 112 3 HOH HOH 357 A HOH 23 3 HOH HOH 358 A HOH 98 3 HOH HOH 359 A HOH 177 3 HOH HOH 360 A HOH 68 3 HOH HOH 361 A HOH 157 3 HOH HOH 362 A HOH 26 3 HOH HOH 363 A HOH 161 3 HOH HOH 364 A HOH 59 3 HOH HOH 365 A HOH 22 3 HOH HOH 366 A HOH 47 3 HOH HOH 367 A HOH 38 3 HOH HOH 368 A HOH 15 3 HOH HOH 369 A HOH 104 3 HOH HOH 370 A HOH 156 3 HOH HOH 371 A HOH 126 3 HOH HOH 372 A HOH 107 3 HOH HOH 373 A HOH 20 3 HOH HOH 374 A HOH 140 3 HOH HOH 375 A HOH 141 3 HOH HOH 376 A HOH 106 3 HOH HOH 377 A HOH 170 3 HOH HOH 378 A HOH 125 3 HOH HOH 379 A HOH 97 3 HOH HOH 380 A HOH 79 3 HOH HOH 381 A HOH 135 3 HOH HOH 382 A HOH 123 3 HOH HOH 383 A HOH 151 3 HOH HOH 384 A HOH 76 3 HOH HOH 385 A HOH 179 3 HOH HOH 386 A HOH 124 3 HOH HOH 387 A HOH 118 3 HOH HOH 388 A HOH 93 3 HOH HOH 389 A HOH 39 3 HOH HOH 390 A HOH 85 3 HOH HOH 391 A HOH 144 3 HOH HOH 392 A HOH 80 3 HOH HOH 393 A HOH 127 3 HOH HOH 394 A HOH 128 3 HOH HOH 395 A HOH 114 3 HOH HOH 396 A HOH 99 3 HOH HOH 397 A HOH 172 3 HOH HOH 398 A HOH 154 3 HOH HOH 399 A HOH 50 3 HOH HOH 400 A HOH 164 3 HOH HOH 401 A HOH 150 3 HOH HOH 402 A HOH 111 3 HOH HOH 403 A HOH 29 3 HOH HOH 404 A HOH 139 3 HOH HOH 405 A HOH 61 3 HOH HOH 406 A HOH 65 3 HOH HOH 407 A HOH 138 3 HOH HOH 301 B HOH 165 3 HOH HOH 302 B HOH 113 3 HOH HOH 303 B HOH 143 3 HOH HOH 304 B HOH 115 3 HOH HOH 305 B HOH 32 3 HOH HOH 306 B HOH 153 3 HOH HOH 307 B HOH 81 3 HOH HOH 308 B HOH 9 3 HOH HOH 309 B HOH 88 3 HOH HOH 310 B HOH 145 3 HOH HOH 311 B HOH 129 3 HOH HOH 312 B HOH 83 3 HOH HOH 313 B HOH 13 3 HOH HOH 314 B HOH 75 3 HOH HOH 315 B HOH 166 3 HOH HOH 316 B HOH 12 3 HOH HOH 317 B HOH 94 3 HOH HOH 318 B HOH 64 3 HOH HOH 319 B HOH 90 3 HOH HOH 320 B HOH 31 3 HOH HOH 321 B HOH 21 3 HOH HOH 322 B HOH 84 3 HOH HOH 323 B HOH 6 3 HOH HOH 324 B HOH 92 3 HOH HOH 325 B HOH 34 3 HOH HOH 326 B HOH 49 3 HOH HOH 327 B HOH 33 3 HOH HOH 328 B HOH 89 3 HOH HOH 329 B HOH 7 3 HOH HOH 330 B HOH 67 3 HOH HOH 331 B HOH 8 3 HOH HOH 332 B HOH 11 3 HOH HOH 333 B HOH 130 3 HOH HOH 334 B HOH 48 3 HOH HOH 335 B HOH 168 3 HOH HOH 336 B HOH 43 3 HOH HOH 337 B HOH 66 3 HOH HOH 338 B HOH 72 3 HOH HOH 339 B HOH 16 3 HOH HOH 340 B HOH 134 3 HOH HOH 341 B HOH 71 3 HOH HOH 342 B HOH 131 3 HOH HOH 343 B HOH 46 3 HOH HOH 344 B HOH 36 3 HOH HOH 345 B HOH 73 3 HOH HOH 346 B HOH 70 3 HOH HOH 347 B HOH 101 3 HOH HOH 348 B HOH 78 3 HOH HOH 349 B HOH 103 3 HOH HOH 350 B HOH 178 3 HOH HOH 351 B HOH 96 3 HOH HOH 352 B HOH 174 3 HOH HOH 353 B HOH 95 3 HOH HOH 354 B HOH 120 3 HOH HOH 355 B HOH 53 3 HOH HOH 356 B HOH 152 3 HOH HOH 357 B HOH 162 3 HOH HOH 358 B HOH 171 3 HOH HOH 359 B HOH 180 3 HOH HOH 360 B HOH 137 3 HOH HOH 361 B HOH 175 3 HOH HOH 362 B HOH 169 3 HOH HOH 363 B HOH 155 3 HOH HOH 364 B HOH 105 3 HOH HOH 365 B HOH 132 3 HOH HOH 366 B HOH 110 3 HOH HOH 367 B HOH 121 3 HOH HOH 368 B HOH 108 3 HOH HOH 369 B HOH 116 3 HOH HOH 370 B HOH 117 3 HOH HOH 371 B n 1 43 A n 2 44 A n 3 45 A n 4 46 A n 5 47 A n 6 48 A n 7 49 A n 8 50 A GLU 51 n 9 GLU 51 A PRO 52 n 10 PRO 52 A ALA 53 n 11 ALA 53 A ARG 54 n 12 ARG 54 A VAL 55 n 13 VAL 55 A ARG 56 n 14 ARG 56 A CYS 57 n 15 CYS 57 A SER 58 n 16 SER 58 A HIS 59 n 17 HIS 59 A LEU 60 n 18 LEU 60 A LEU 61 n 19 LEU 61 A VAL 62 n 20 VAL 62 A LYS 63 n 21 LYS 63 A HIS 64 n 22 HIS 64 A SER 65 n 23 SER 65 A GLN 66 n 24 GLN 66 A SER 67 n 25 SER 67 A ARG 68 n 26 ARG 68 A ARG 69 n 27 ARG 69 A PRO 70 n 28 PRO 70 A SER 71 n 29 SER 71 A SER 72 n 30 SER 72 A TRP 73 n 31 TRP 73 A ARG 74 n 32 ARG 74 A GLN 75 n 33 GLN 75 A GLU 76 n 34 GLU 76 A GLN 77 n 35 GLN 77 A ILE 78 n 36 ILE 78 A THR 79 n 37 THR 79 A ARG 80 n 38 ARG 80 A THR 81 n 39 THR 81 A GLN 82 n 40 GLN 82 A GLU 83 n 41 GLU 83 A GLU 84 n 42 GLU 84 A ALA 85 n 43 ALA 85 A LEU 86 n 44 LEU 86 A GLU 87 n 45 GLU 87 A LEU 88 n 46 LEU 88 A ILE 89 n 47 ILE 89 A ASN 90 n 48 ASN 90 A GLY 91 n 49 GLY 91 A TYR 92 n 50 TYR 92 A ILE 93 n 51 ILE 93 A GLN 94 n 52 GLN 94 A LYS 95 n 53 LYS 95 A ILE 96 n 54 ILE 96 A LYS 97 n 55 LYS 97 A SER 98 n 56 SER 98 A GLY 99 n 57 GLY 99 A GLU 100 n 58 GLU 100 A GLU 101 n 59 GLU 101 A ASP 102 n 60 ASP 102 A PHE 103 n 61 PHE 103 A GLU 104 n 62 GLU 104 A SER 105 n 63 SER 105 A LEU 106 n 64 LEU 106 A ALA 107 n 65 ALA 107 A SER 108 n 66 SER 108 A GLN 109 n 67 GLN 109 A PHE 110 n 68 PHE 110 A SER 111 n 69 SER 111 A ASP 112 n 70 ASP 112 A CYS 113 n 71 CYS 113 A SER 114 n 72 SER 114 A SER 115 n 73 SER 115 A ALA 116 n 74 ALA 116 A LYS 117 n 75 LYS 117 A ALA 118 n 76 ALA 118 A ARG 119 n 77 ARG 119 A GLY 120 n 78 GLY 120 A ASP 121 n 79 ASP 121 A LEU 122 n 80 LEU 122 A GLY 123 n 81 GLY 123 A ALA 124 n 82 ALA 124 A PHE 125 n 83 PHE 125 A SER 126 n 84 SER 126 A ARG 127 n 85 ARG 127 A GLY 128 n 86 GLY 128 A GLN 129 n 87 GLN 129 A MET 130 n 88 MET 130 A GLN 131 n 89 GLN 131 A LYS 132 n 90 LYS 132 A PRO 133 n 91 PRO 133 A PHE 134 n 92 PHE 134 A GLU 135 n 93 GLU 135 A ASP 136 n 94 ASP 136 A ALA 137 n 95 ALA 137 A SER 138 n 96 SER 138 A PHE 139 n 97 PHE 139 A ALA 140 n 98 ALA 140 A LEU 141 n 99 LEU 141 A ARG 142 n 100 ARG 142 A THR 143 n 101 THR 143 A GLY 144 n 102 GLY 144 A GLU 145 n 103 GLU 145 A MET 146 n 104 MET 146 A SER 147 n 105 SER 147 A GLY 148 n 106 GLY 148 A PRO 149 n 107 PRO 149 A VAL 150 n 108 VAL 150 A PHE 151 n 109 PHE 151 A THR 152 n 110 THR 152 A ASP 153 n 111 ASP 153 A SER 154 n 112 SER 154 A GLY 155 n 113 GLY 155 A ILE 156 n 114 ILE 156 A HIS 157 n 115 HIS 157 A ILE 158 n 116 ILE 158 A ILE 159 n 117 ILE 159 A LEU 160 n 118 LEU 160 A ARG 161 n 119 ARG 161 A THR 162 n 120 THR 162 A GLU 163 n 121 GLU 163 A n 1 43 B n 2 44 B n 3 45 B n 4 46 B n 5 47 B GLY 48 n 6 GLY 48 B GLN 49 n 7 GLN 49 B GLY 50 n 8 GLY 50 B GLU 51 n 9 GLU 51 B PRO 52 n 10 PRO 52 B ALA 53 n 11 ALA 53 B ARG 54 n 12 ARG 54 B VAL 55 n 13 VAL 55 B ARG 56 n 14 ARG 56 B CYS 57 n 15 CYS 57 B SER 58 n 16 SER 58 B HIS 59 n 17 HIS 59 B LEU 60 n 18 LEU 60 B LEU 61 n 19 LEU 61 B VAL 62 n 20 VAL 62 B LYS 63 n 21 LYS 63 B HIS 64 n 22 HIS 64 B SER 65 n 23 SER 65 B GLN 66 n 24 GLN 66 B SER 67 n 25 SER 67 B ARG 68 n 26 ARG 68 B ARG 69 n 27 ARG 69 B PRO 70 n 28 PRO 70 B SER 71 n 29 SER 71 B SER 72 n 30 SER 72 B TRP 73 n 31 TRP 73 B ARG 74 n 32 ARG 74 B GLN 75 n 33 GLN 75 B GLU 76 n 34 GLU 76 B GLN 77 n 35 GLN 77 B ILE 78 n 36 ILE 78 B THR 79 n 37 THR 79 B ARG 80 n 38 ARG 80 B THR 81 n 39 THR 81 B GLN 82 n 40 GLN 82 B GLU 83 n 41 GLU 83 B GLU 84 n 42 GLU 84 B ALA 85 n 43 ALA 85 B LEU 86 n 44 LEU 86 B GLU 87 n 45 GLU 87 B LEU 88 n 46 LEU 88 B ILE 89 n 47 ILE 89 B ASN 90 n 48 ASN 90 B GLY 91 n 49 GLY 91 B TYR 92 n 50 TYR 92 B ILE 93 n 51 ILE 93 B GLN 94 n 52 GLN 94 B LYS 95 n 53 LYS 95 B ILE 96 n 54 ILE 96 B LYS 97 n 55 LYS 97 B SER 98 n 56 SER 98 B GLY 99 n 57 GLY 99 B GLU 100 n 58 GLU 100 B GLU 101 n 59 GLU 101 B ASP 102 n 60 ASP 102 B PHE 103 n 61 PHE 103 B GLU 104 n 62 GLU 104 B SER 105 n 63 SER 105 B LEU 106 n 64 LEU 106 B ALA 107 n 65 ALA 107 B SER 108 n 66 SER 108 B GLN 109 n 67 GLN 109 B PHE 110 n 68 PHE 110 B SER 111 n 69 SER 111 B ASP 112 n 70 ASP 112 B CYS 113 n 71 CYS 113 B SER 114 n 72 SER 114 B SER 115 n 73 SER 115 B ALA 116 n 74 ALA 116 B LYS 117 n 75 LYS 117 B ALA 118 n 76 ALA 118 B ARG 119 n 77 ARG 119 B GLY 120 n 78 GLY 120 B ASP 121 n 79 ASP 121 B LEU 122 n 80 LEU 122 B GLY 123 n 81 GLY 123 B ALA 124 n 82 ALA 124 B PHE 125 n 83 PHE 125 B SER 126 n 84 SER 126 B ARG 127 n 85 ARG 127 B GLY 128 n 86 GLY 128 B GLN 129 n 87 GLN 129 B MET 130 n 88 MET 130 B GLN 131 n 89 GLN 131 B LYS 132 n 90 LYS 132 B PRO 133 n 91 PRO 133 B PHE 134 n 92 PHE 134 B GLU 135 n 93 GLU 135 B ASP 136 n 94 ASP 136 B ALA 137 n 95 ALA 137 B SER 138 n 96 SER 138 B PHE 139 n 97 PHE 139 B ALA 140 n 98 ALA 140 B LEU 141 n 99 LEU 141 B ARG 142 n 100 ARG 142 B THR 143 n 101 THR 143 B GLY 144 n 102 GLY 144 B GLU 145 n 103 GLU 145 B MET 146 n 104 MET 146 B SER 147 n 105 SER 147 B GLY 148 n 106 GLY 148 B PRO 149 n 107 PRO 149 B VAL 150 n 108 VAL 150 B PHE 151 n 109 PHE 151 B THR 152 n 110 THR 152 B ASP 153 n 111 ASP 153 B SER 154 n 112 SER 154 B GLY 155 n 113 GLY 155 B ILE 156 n 114 ILE 156 B HIS 157 n 115 HIS 157 B ILE 158 n 116 ILE 158 B ILE 159 n 117 ILE 159 B LEU 160 n 118 LEU 160 B ARG 161 n 119 ARG 161 B THR 162 n 120 THR 162 B GLU 163 n 121 GLU 163 B author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric none 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 122 A O LEU 80 A N CYS 57 A N CYS 15 A N VAL 62 A N VAL 20 A O ILE 156 A O ILE 114 A O HIS 157 A O HIS 115 A N VAL 150 A N VAL 108 B O LEU 122 B O LEU 80 B N CYS 57 B N CYS 15 B N SER 58 B N SER 16 B O LEU 160 B O LEU 118 B O HIS 157 B O HIS 115 B N VAL 150 B N VAL 108 1 A HOH 404 E HOH 1 A CZ ARG 68 A CZ ARG 26 1 Y 1 A NH1 ARG 68 A NH1 ARG 26 1 Y 1 A NH2 ARG 68 A NH2 ARG 26 1 Y 1 A CD LYS 117 A CD LYS 75 1 Y 1 A CE LYS 117 A CE LYS 75 1 Y 1 A NZ LYS 117 A NZ LYS 75 1 Y 1 B CD LYS 117 B CD LYS 75 1 Y 1 B CE LYS 117 B CE LYS 75 1 Y 1 B NZ LYS 117 B NZ LYS 75 1 Y 1 A GLY 43 A GLY 1 1 Y 1 A PRO 44 A PRO 2 1 Y 1 A GLY 45 A GLY 3 1 Y 1 A LYS 46 A LYS 4 1 Y 1 A ASN 47 A ASN 5 1 Y 1 A GLY 48 A GLY 6 1 Y 1 A GLN 49 A GLN 7 1 Y 1 A GLY 50 A GLY 8 1 Y 1 B GLY 43 B GLY 1 1 Y 1 B PRO 44 B PRO 2 1 Y 1 B GLY 45 B GLY 3 1 Y 1 B LYS 46 B LYS 4 1 Y 1 B ASN 47 B ASN 5 1 Y 1 A A N O GLU HOH 51 301 2.17 1 B GLN 49 51.60 -155.08 24.76 0.2104 0.1827 0.1841 1.52 34.95 1597 30836 32433 4.92 98.07 0.1848 1 FREE R-VALUE 1.34 MOLECULAR REPLACEMENT 23.4167 0.9000 1.1100 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 1.52 34.95 178 2000 32 0 1790 0.0106 1856 1.0972 2493 0.0565 262 0.0106 334 18.0102 719 0.3247 0.2731 1.57 156 2726 96.61 0.3088 0.2563 1.63 123 2739 96.95 0.2865 0.2566 1.69 124 2771 97.12 0.2663 0.2323 1.77 148 2777 97.60 0.2266 0.2093 1.86 170 2764 97.90 0.2208 0.1900 1.98 144 2806 98.27 0.2013 0.1881 2.13 164 2768 98.46 0.2069 0.1719 2.34 130 2865 98.68 0.2149 0.1858 2.68 136 2827 99.13 0.1943 0.1742 3.38 157 2849 99.18 0.1840 0.1559 34.95 145 2944 98.85 18.91 1.52 34.95 9JJS 32433 0.994 0.999 0.08585 0.04265 0.09629 1 10.70 5.0 98.06 1.52 1.574 3188 0.73 0.919 1 data reduction XDS data scaling Aimless phasing MOLREP refinement PHENIX 1.19.2_4158 5 monoclinic C 1 2 1 C 2y x,y,z -x,y,-z x+1/2,y+1/2,z -x+1/2,y+1/2,-z N Crystal Structure of human Pin1 catalytic domain in complex with a covalent inhibitor 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A THR 81 A THR 39 HELX_P A GLY 99 A GLY 57 1 AA1 19 A ASP 102 A ASP 60 HELX_P A SER 111 A SER 69 1 AA2 10 A CYS 113 A CYS 71 HELX_P A ARG 119 A ARG 77 5 AA3 7 A GLN 131 A GLN 89 HELX_P A LEU 141 A LEU 99 1 AA4 11 B THR 81 B THR 39 HELX_P B SER 98 B SER 56 1 AA5 18 B ASP 102 B ASP 60 HELX_P B SER 111 B SER 69 1 AA6 10 B CYS 113 B CYS 71 HELX_P B ARG 119 B ARG 77 5 AA7 7 B GLN 131 B GLN 89 HELX_P B ALA 140 B ALA 98 1 AA8 10 covale 1.833 none A CYS 113 A SG CYS 71 1_555 A A1D9T 200 C C4 A1D9T 1_555 covale 1.831 none B CYS 113 B SG CYS 71 1_555 B A1D9T 200 D C4 A1D9T 1_555 ISOMERASE human Pin1 catalytic domain; Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1; covalent inhibitor, ISOMERASE PIN1_HUMAN UNP 1 45 Q13526 GKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGA FSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 45 163 9JJS 45 163 Q13526 A 1 3 121 45 163 9JJS 45 163 Q13526 B 1 3 121 1 expression tag GLY 43 9JJS A Q13526 UNP 1 1 expression tag PRO 44 9JJS A Q13526 UNP 2 1 LYS conflict GLN 77 9JJS A Q13526 UNP 77 35 1 LYS conflict GLN 82 9JJS A Q13526 UNP 82 40 2 expression tag GLY 43 9JJS B Q13526 UNP 1 2 expression tag PRO 44 9JJS B Q13526 UNP 2 2 LYS conflict GLN 77 9JJS B Q13526 UNP 77 35 2 LYS conflict GLN 82 9JJS B Q13526 UNP 82 40 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASP 121 A ASP 79 A PHE 125 A PHE 83 A VAL 55 A VAL 13 A VAL 62 A VAL 20 A GLY 155 A GLY 113 A GLU 163 A GLU 121 A VAL 150 A VAL 108 A THR 152 A THR 110 B ASP 121 B ASP 79 B PHE 125 B PHE 83 B VAL 55 B VAL 13 B VAL 62 B VAL 20 B GLY 155 B GLY 113 B GLU 163 B GLU 121 B VAL 150 B VAL 108 B THR 152 B THR 110 5 C 1 2 1 C 2y