0.015778 0.009109 0.000000 0.000000 0.018218 0.000000 0.000000 0.000000 0.014055 0.00000 0.00000 0.00000 Gao, A.M. Zhoiu, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 63.381 63.381 71.150 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 R C N 85 N O N 86 R C N 87 N N N 88 N C N 89 N O N 90 N N N 91 N C N 92 N N N 93 N C N 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 R C N 111 N C N 112 N O N 113 N C N 114 N S N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N O N 124 N P N 125 N O N 126 N O N 127 N O N 128 N C N 129 R C N 130 N O N 131 S C N 132 N O N 133 N C N 134 R C Y 135 N N Y 136 N C Y 137 N N Y 138 N C Y 139 N C N 140 N N Y 141 N N Y 142 N C Y 143 N N Y 144 N C N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N P N 161 N O N 162 N O N 163 N O N 164 N C N 165 R C N 166 N O N 167 S C N 168 N O N 169 N C N 170 R C N 171 N N N 172 N C N 173 N O N 174 N N N 175 N C N 176 N N N 177 N C N 178 N C N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N O N 194 N P N 195 N O N 196 N O N 197 N O N 198 N C N 199 R C N 200 N O N 201 S C N 202 N O N 203 N C N 204 R C Y 205 N N Y 206 N C Y 207 N N Y 208 N C N 209 N C N 210 N O N 211 N N N 212 N C N 213 N N N 214 N N Y 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N O N 231 N P N 232 N O N 233 N O N 234 N O N 235 N C N 236 R C N 237 N O N 238 S C N 239 N O N 240 R C N 241 N O N 242 R C Y 243 N N Y 244 N C Y 245 N N Y 246 N C N 247 N C N 248 N O N 249 N N N 250 N C N 251 N N N 252 N N Y 253 N C N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C N 273 N C N 274 N C N 275 N O N 276 N N N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N C N 294 N C N 295 N O N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 N C N 309 N C N 310 N O N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N O N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 S C N 325 N C N 326 N C N 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C N 347 N C N 348 N C N 349 N C N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N N N 365 S C N 366 N C N 367 N O N 368 N C N 369 N C N 370 N C N 371 N C N 372 N N N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 N C N 394 N C N 395 N C N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N N N 407 S C N 408 N C N 409 N O N 410 N C N 411 N O N 412 N O N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 R C N 425 N O N 426 N C N 427 N O N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N N N 438 S C N 439 N C N 440 N O N 441 N C Y 442 N C Y 443 N C Y 444 N C Y 445 N N Y 446 N C Y 447 N C Y 448 N C Y 449 N C Y 450 N C N 451 N O N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N N N 465 S C N 466 N C N 467 N O N 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C N 475 N O N 476 N O N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N O N 489 N P N 490 N O N 491 N O N 492 N O N 493 N C N 494 R C N 495 N O N 496 S C N 497 N O N 498 R C N 499 N O N 500 R C N 501 N N N 502 N C N 503 N O N 504 N N N 505 N C N 506 N O N 507 N C N 508 N C N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N N N 523 S C N 524 N C N 525 N O N 526 N C N 527 N C N 528 N C N 529 N O N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing Y 142 N sing Y 143 N sing Y 144 N doub N 145 N sing Y 146 N sing Y 147 N sing Y 148 N doub N 149 N sing Y 150 N doub N 151 N sing N 152 N sing Y 153 N sing Y 154 N doub N 155 N sing Y 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing Y 215 N sing Y 216 N sing Y 217 N doub N 218 N sing Y 219 N sing N 220 N sing Y 221 N doub N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N sing Y 256 N sing Y 257 N doub N 258 N sing Y 259 N sing N 260 N sing Y 261 N doub N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N doub N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N doub N 438 N sing N 439 N sing N 440 N sing N 441 N sing Y 442 N doub Y 443 N sing Y 444 N sing N 445 N sing Y 446 N doub Y 447 N sing Y 448 N sing N 449 N sing Y 450 N sing Y 451 N doub N 452 N sing Y 453 N doub N 454 N sing Y 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N doub N 466 N sing N 467 N sing N 468 N sing N 469 N sing Y 470 N doub Y 471 N sing Y 472 N sing N 473 N sing Y 474 N doub N 475 N sing Y 476 N doub N 477 N sing Y 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N doub N 510 N sing N 511 N sing N 512 N sing N 513 N doub N 514 N sing N 515 N doub N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N doub N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing US Mol.Cell MOCEFL 2168 1097-2765 85 1790 1805.e7 10.1016/j.molcel.2025.04.004 40267921 ZBP1 senses spliceosome stress through Z-RNA:DNA hybrid recognition. 2025 10.2210/pdb9j8g/pdb pdb_00009j8g 100 1 N PIXEL 2024-05-11 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.97907 1.0 BL19U1 SSRF 0.97907 SYNCHROTRON SSRF BEAMLINE BL19U1 6556.586 Z-DNA-binding protein 1 1 man polymer 1778.208 DNA (5'-D(P*CP*AP*CP*GP*CP*A)-3') 1 syn polymer 1908.173 RNA (5'-R(P*UP*GP*CP*GP*UP*G)-3') 1 syn polymer 18.015 water 36 nat water DNA-dependent activator of IFN-regulatory factors,DAI,Tumor stroma and activated macrophage protein DLM-1 no no DNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSIGG DNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSIGG A polypeptide(L) no no (DC)(DA)(DC)(DG)(DC)(DA) CACGCA C polydeoxyribonucleotide no no UGCGUG UGCGUG B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse sample 1 59 Zbp1, Dlm1 10090 Mus musculus 562 Escherichia coli Biological sequence 1 2.01 38.92 VAPOR DIFFUSION, HANGING DROP PEG 4000 278 5.418 1 28 B 1 B 6 -2.669 B_U1:G6_B 1 -7.073 -0.286 0.133 -0.185 0.800 1 28 B 2 B 5 0.025 B_G2:U5_B 2 -3.704 0.322 0.598 -0.528 11.146 1 19 B 3 B 4 0.522 B_C3:G4_B 3 -3.209 -0.456 0.454 -0.395 -11.146 1 19 B 4 B 3 0.522 B_G4:C3_B 4 -3.209 0.456 0.454 -0.395 -0.800 1 28 B 5 B 2 0.025 B_U5:G2_B 5 -3.704 -0.322 0.598 -0.528 -5.418 1 28 B 6 B 1 -2.669 B_G6:U1_B 6 -7.073 0.286 0.133 -0.185 -2.786 1 C 201 C 206 -6.228 C_DC201:DA206_C 7 -9.966 0.272 0.136 0.012 1.252 1 C 202 C 205 -0.597 C_DA202:DC205_C 8 -7.239 0.756 -0.426 -0.266 11.711 1 19 C 203 C 204 -5.766 C_DC203:DG204_C 9 -3.975 -0.475 -0.735 0.202 -11.711 1 19 C 204 C 203 -5.766 C_DG204:DC203_C 10 -3.975 0.475 -0.735 0.202 -1.252 1 C 205 C 202 -0.597 C_DC205:DA202_C 11 -7.239 -0.756 -0.426 -0.266 2.786 1 C 206 C 201 -6.228 C_DA206:DC201_C 12 -9.966 -0.272 0.136 0.012 5.320 -10.998 B B 1 2 27.639 B B 6 5 3.620 -5.061 0.084 4.714 BB_U1G2:U5G6_BB 1 -2.122 -11.589 -9.534 -13.126 -4.372 2.699 -51.519 B B 2 3 14.538 B B 5 4 3.098 -12.524 -0.097 -1.401 BB_G2C3:G4U5_BB 2 1.459 1.693 -50.055 2.380 -0.022 6.588 -13.185 B B 3 4 41.413 B B 4 3 4.042 -8.711 0.000 5.383 BB_C3G4:C3G4_BB 3 0.000 0.000 -9.908 -6.034 0.000 2.699 -51.519 B B 4 5 14.538 B B 3 2 3.098 -12.524 0.097 -1.401 BB_G4U5:G2C3_BB 4 -1.459 -1.693 -50.055 2.380 0.022 5.320 -10.998 B B 5 6 27.639 B B 2 1 3.620 -5.061 -0.084 4.714 BB_U5G6:U1G2_BB 5 2.122 11.589 -9.534 -13.126 4.372 5.459 -14.242 C C 201 202 52.955 C C 206 205 3.231 -11.127 0.223 4.779 CC_DC201DA202:DC205DA206_CC 6 4.103 19.528 -7.901 -1.704 7.379 2.789 -50.565 C C 202 203 14.061 C C 205 204 3.159 -11.912 -0.123 -1.329 CC_DA202DC203:DG204DC205_CC 7 0.874 1.032 -49.225 2.334 -0.087 6.677 -12.838 C C 203 204 44.318 C C 204 203 3.815 -8.959 0.000 5.657 CC_DC203DG204:DC203DG204_CC 8 0.000 0.000 -9.204 -6.273 0.000 2.789 -50.565 C C 204 205 14.061 C C 203 202 3.159 -11.912 0.123 -1.329 CC_DG204DC205:DA202DC203_CC 9 -0.874 -1.032 -49.225 2.334 0.087 5.459 -14.242 C C 205 206 52.955 C C 202 201 3.231 -11.127 -0.223 4.779 CC_DC205DA206:DC201DA202_CC 10 -4.103 -19.528 -7.901 -1.704 -7.379 repository Initial release 1 0 2025-06-25 China National Science Foundation (NSF, China) chunzhou@zju.edu.cn 0000-0002-9257-468X Chun Zhou principal investigator/group leader N PDBJ Y PDBC 2024-08-21 REL REL HOH water 9606 Homo sapiens sample 1 6 9606 Homo sapiens sample 1 6 N 1j75 PDB experimental model HOH 1 4 HOH HOH 101 A HOH 21 4 HOH HOH 102 A HOH 7 4 HOH HOH 103 A HOH 6 4 HOH HOH 104 A HOH 13 4 HOH HOH 105 A HOH 17 4 HOH HOH 106 A HOH 8 4 HOH HOH 107 A HOH 9 4 HOH HOH 108 A HOH 4 4 HOH HOH 109 A HOH 5 4 HOH HOH 110 A HOH 11 4 HOH HOH 111 A HOH 22 4 HOH HOH 112 A HOH 33 4 HOH HOH 113 A HOH 30 4 HOH HOH 114 A HOH 32 4 HOH HOH 115 A HOH 10 4 HOH HOH 116 A HOH 31 4 HOH HOH 117 A HOH 12 4 HOH HOH 118 A HOH 35 4 HOH HOH 119 A HOH 37 4 HOH HOH 120 A HOH 14 4 HOH HOH 301 C HOH 24 4 HOH HOH 302 C HOH 29 4 HOH HOH 303 C HOH 18 4 HOH HOH 304 C HOH 26 4 HOH HOH 305 C HOH 20 4 HOH HOH 306 C HOH 2 4 HOH HOH 101 B HOH 23 4 HOH HOH 102 B HOH 36 4 HOH HOH 103 B HOH 19 4 HOH HOH 104 B HOH 16 4 HOH HOH 105 B HOH 28 4 HOH HOH 106 B HOH 15 4 HOH HOH 107 B HOH 3 4 HOH HOH 108 B HOH 27 4 HOH HOH 109 B HOH 25 4 HOH HOH 110 B ASP 12 n 1 ASP 12 A ASN 13 n 2 ASN 13 A LEU 14 n 3 LEU 14 A GLU 15 n 4 GLU 15 A GLN 16 n 5 GLN 16 A LYS 17 n 6 LYS 17 A ILE 18 n 7 ILE 18 A LEU 19 n 8 LEU 19 A GLN 20 n 9 GLN 20 A VAL 21 n 10 VAL 21 A LEU 22 n 11 LEU 22 A SER 23 n 12 SER 23 A ASP 24 n 13 ASP 24 A ASP 25 n 14 ASP 25 A GLY 26 n 15 GLY 26 A GLY 27 n 16 GLY 27 A PRO 28 n 17 PRO 28 A VAL 29 n 18 VAL 29 A LYS 30 n 19 LYS 30 A ILE 31 n 20 ILE 31 A GLY 32 n 21 GLY 32 A GLN 33 n 22 GLN 33 A LEU 34 n 23 LEU 34 A VAL 35 n 24 VAL 35 A LYS 36 n 25 LYS 36 A LYS 37 n 26 LYS 37 A CYS 38 n 27 CYS 38 A GLN 39 n 28 GLN 39 A VAL 40 n 29 VAL 40 A PRO 41 n 30 PRO 41 A LYS 42 n 31 LYS 42 A LYS 43 n 32 LYS 43 A THR 44 n 33 THR 44 A LEU 45 n 34 LEU 45 A ASN 46 n 35 ASN 46 A GLN 47 n 36 GLN 47 A VAL 48 n 37 VAL 48 A LEU 49 n 38 LEU 49 A TYR 50 n 39 TYR 50 A ARG 51 n 40 ARG 51 A LEU 52 n 41 LEU 52 A LYS 53 n 42 LYS 53 A LYS 54 n 43 LYS 54 A GLU 55 n 44 GLU 55 A ASP 56 n 45 ASP 56 A ARG 57 n 46 ARG 57 A VAL 58 n 47 VAL 58 A SER 59 n 48 SER 59 A SER 60 n 49 SER 60 A PRO 61 n 50 PRO 61 A GLU 62 n 51 GLU 62 A PRO 63 n 52 PRO 63 A ALA 64 n 53 ALA 64 A THR 65 n 54 THR 65 A TRP 66 n 55 TRP 66 A SER 67 n 56 SER 67 A ILE 68 n 57 ILE 68 A GLY 69 n 58 GLY 69 A n 59 70 A DC 201 n 1 DC 201 C DA 202 n 2 DA 202 C DC 203 n 3 DC 203 C DG 204 n 4 DG 204 C DC 205 n 5 DC 205 C DA 206 n 6 DA 206 C U 1 n 1 U 1 B G 2 n 2 G 2 B C 3 n 3 C 3 B G 4 n 4 G 4 B U 5 n 5 U 5 B G 6 n 6 G 6 B 8.3882 1.7170 6.0715 1.1714 1.3551 5.9131 -0.2473 0.4606 1.0268 0.0794 -0.1860 0.1513 -0.7977 0.1048 0.2010 0.3672 -0.0841 -0.0274 0.3508 0.0474 0.3795 refined 4.1753 -13.3392 -0.3666 X-RAY DIFFRACTION 6.7102 -0.7417 0.0404 0.9453 -0.4575 5.7065 0.0780 -0.1696 0.2364 0.1718 -0.1286 -0.1278 -0.0549 -0.3298 -0.0404 0.2400 -0.0921 0.0190 0.3776 -0.0102 0.3144 refined 2.9999 -17.7006 7.9686 X-RAY DIFFRACTION 9.2684 1.4651 -3.7800 4.5703 -1.1911 5.5258 -0.2976 0.7228 -0.3319 -0.6279 0.0249 0.4194 0.6939 -0.6533 0.2998 0.4331 -0.1694 -0.0499 0.3691 -0.0284 0.2590 refined 1.7858 -25.2894 -1.3956 X-RAY DIFFRACTION 4.8000 0.8679 -1.7751 7.2736 -2.0139 7.2311 -0.1188 0.1906 0.0864 -0.7381 -0.2002 -0.9070 0.4669 0.9233 0.2847 0.3328 -0.0409 0.0609 0.4157 0.0043 0.3467 refined 10.8799 -23.0860 0.1486 X-RAY DIFFRACTION 1.0202 -0.3201 -0.9815 1.9759 -0.6638 1.6334 -0.0513 -0.2177 -0.0805 0.4032 -0.2910 -0.4008 0.1077 0.2815 0.3310 0.2874 -0.0728 -0.0250 0.4231 -0.0086 0.2979 refined 1.2433 -33.9582 4.4329 X-RAY DIFFRACTION 0.5316 -0.3188 -0.7741 3.1415 -0.9395 1.7694 -0.2646 0.4457 -0.2346 0.1024 -0.2678 0.3317 0.1770 -0.2797 0.2799 0.4601 -0.2200 0.0036 0.4516 -0.0848 0.3107 refined 0.3391 -33.9416 4.2531 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' and (resid 12 through 25 ) X-RAY DIFFRACTION 2 chain 'A' and (resid 26 through 41 ) X-RAY DIFFRACTION 3 chain 'A' and (resid 42 through 54 ) X-RAY DIFFRACTION 4 chain 'A' and (resid 55 through 69 ) X-RAY DIFFRACTION 5 chain 'C' and (resid 201 through 206 ) X-RAY DIFFRACTION 6 chain 'B' and (resid 1 through 6 ) author_defined_assembly 6 hexameric gel filtration 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 10_445 -y-1,-x-1,-z+1/6 crystal symmetry operation -31.6905000000 -54.8895561173 11.8583333333 A N VAL 29 A N VAL 18 A O TRP 66 A O TRP 55 A O SER 67 A O SER 56 A N SER 59 A N SER 48 1 A HOH 116 D HOH 1 A CG ASP 12 A CG ASP 1 1 Y 1 A OD1 ASP 12 A OD1 ASP 1 1 Y 1 A OD2 ASP 12 A OD2 ASP 1 1 Y 1 A CD LYS 42 A CD LYS 31 1 Y 1 A CE LYS 42 A CE LYS 31 1 Y 1 A NZ LYS 42 A NZ LYS 31 1 Y 1 A GLY 70 A GLY 59 1 Y 1 C C O3' C3' DC DC 201 201 -0.038 0.006 1.419 1.381 A A N 0.2344 0.2008 0.2025 1.80 43.46 728 14810 4.92 99.89 0.22 1 FREE R-VALUE 1.35 MOLECULAR REPLACEMENT 32.29 0.90 1.10 ML FLAT BULK SOLVENT MODEL 1.80 43.46 36 735 0 250 449 0.008 1.035 20.604 186 0.066 126 0.007 90 0.3186 0.2794 1.94 146 2787 99.00 0.2956 0.2368 2.13 128 2833 100.00 0.2694 0.2318 2.44 154 2834 100.00 0.2677 0.2243 3.08 145 2808 100.00 0.2011 0.1694 43.46 155 2820 100.00 1.8 43.46 9J8G 14810 0.999 0.09103 1 16.17 16.7 99.89 0.8394 1.8 1.94 1580 0.811 1 refinement PHENIX (1.21rc1_4924: ???) data reduction XDS data scaling Aimless phasing PHASER N mouse zbp1 hybrid complex 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N A ASP 12 A ASP 1 HELX_P A GLY 26 A GLY 15 1 AA1 15 A ILE 31 A ILE 20 HELX_P A GLN 39 A GLN 28 1 AA2 9 A PRO 41 A PRO 30 HELX_P A GLU 55 A GLU 44 1 AA3 15 hydrog TYPE_28_PAIR B B B U 1 C N3 U 1 1_555 B G 6 C O6 G 6 10_445 hydrog TYPE_28_PAIR B B B U 1 C O2 U 1 1_555 B G 6 C N1 G 6 10_445 hydrog TYPE_28_PAIR B B B G 2 C N1 G 2 1_555 B U 5 C O2 U 5 10_445 hydrog TYPE_28_PAIR B B B G 2 C O6 G 2 1_555 B U 5 C N3 U 5 10_445 hydrog WATSON-CRICK B B B C 3 C N3 C 3 1_555 B G 4 C N1 G 4 10_445 hydrog WATSON-CRICK B B B C 3 C N4 C 3 1_555 B G 4 C O6 G 4 10_445 hydrog WATSON-CRICK B B B C 3 C O2 C 3 1_555 B G 4 C N2 G 4 10_445 hydrog WATSON-CRICK B B B G 4 C N1 G 4 1_555 B C 3 C N3 C 3 10_445 hydrog WATSON-CRICK B B B G 4 C N2 G 4 1_555 B C 3 C O2 C 3 10_445 hydrog WATSON-CRICK B B B G 4 C O6 G 4 1_555 B C 3 C N4 C 3 10_445 hydrog TYPE_28_PAIR B B B U 5 C N3 U 5 1_555 B G 2 C O6 G 2 10_445 hydrog TYPE_28_PAIR B B B U 5 C O2 U 5 1_555 B G 2 C N1 G 2 10_445 hydrog TYPE_28_PAIR B B B G 6 C N1 G 6 1_555 B U 1 C O2 U 1 10_445 hydrog TYPE_28_PAIR B B B G 6 C O6 G 6 1_555 B U 1 C N3 U 1 10_445 hydrog DC-DA MISPAIR A A C DC 201 B N4 DC 1 1_555 C DA 206 B N1 DA 6 10_445 hydrog DA-DC MISPAIR A A C DA 202 B N6 DA 2 1_555 C DC 205 B N3 DC 5 10_445 hydrog WATSON-CRICK A A C DC 203 B N3 DC 3 1_555 C DG 204 B N1 DG 4 10_445 hydrog WATSON-CRICK A A C DC 203 B N4 DC 3 1_555 C DG 204 B O6 DG 4 10_445 hydrog WATSON-CRICK A A C DC 203 B O2 DC 3 1_555 C DG 204 B N2 DG 4 10_445 hydrog WATSON-CRICK A A C DG 204 B N1 DG 4 1_555 C DC 203 B N3 DC 3 10_445 hydrog WATSON-CRICK A A C DG 204 B N2 DG 4 1_555 C DC 203 B O2 DC 3 10_445 hydrog WATSON-CRICK A A C DG 204 B O6 DG 4 1_555 C DC 203 B N4 DC 3 10_445 hydrog DC-DA MISPAIR A A C DC 205 B N3 DC 5 1_555 C DA 202 B N6 DA 2 10_445 hydrog DA-DC MISPAIR A A C DA 206 B N1 DA 6 1_555 C DC 201 B N4 DC 1 10_445 DNA BINDING PROTEIN/DNA/RNA zbp1, DNA BINDING PROTEIN/DNA/RNA, DNA BINDING PROTEIN-DNA-RNA complex ZBP1_MOUSE UNP 1 12 Q9QY24 DNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSIGG 9J8G PDB 2 1 9J8G 9J8G PDB 3 1 9J8G 12 70 9J8G 12 70 Q9QY24 A 1 1 59 201 206 9J8G 201 206 9J8G C 2 1 6 1 6 9J8G 1 6 9J8G B 3 1 6 3 anti-parallel anti-parallel A VAL 29 A VAL 18 A LYS 30 A LYS 19 A THR 65 A THR 54 A ILE 68 A ILE 57 A VAL 58 A VAL 47 A GLU 62 A GLU 51 179 P 65 2 2