0.206186 0.000000 0.000000 0.000000 0.048690 0.000000 0.000000 0.000000 0.023626 0.00000 0.00000 0.00000 3.54356 2.42580 25.62398 1.50364 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0.51345 0.48472 24.73122 6.32584 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.01032 2.96436 19.97189 1.75589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.49882 3.47563 15.80542 1.70748 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0000-0002-2652-4916 Durvanger, Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 4.850 20.538 42.326 4216.063 C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N O N 8 N N N 9 N O N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N N N 19 S C N 20 N C N 21 N O N 22 N C N 23 N C N 24 N C N 25 N O N 26 N N N 27 N O N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 S C N 43 N C N 44 N C N 45 N C N 46 N O N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N N N 61 S C N 62 N C N 63 N O N 64 N C N 65 N C N 66 N C N 67 N C N 68 N O N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N N N 83 S C N 84 N C N 85 N O N 86 N C Y 87 N C Y 88 N C Y 89 N C Y 90 N C Y 91 N C Y 92 N C N 93 N O N 94 N O N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N doub N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing Y 89 N doub Y 90 N sing Y 91 N sing N 92 N sing Y 93 N doub N 94 N sing Y 95 N doub N 96 N sing Y 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing GE Chemistry 0947-6539 31 e202404669 e202404669 10.1002/chem.202404669 40197673 Chemical Evolution of Early Macromolecules: From Prebiotic Oligopeptides to Self-Organizing Biosystems via Amyloid Formation. 2025 0009-0003-9246-2228 0000-0002-9721-953X 0000-0002-2652-4916 0000-0001-8239-3933 0000-0001-5007-4807 0000-0001-9456-8876 0000-0002-8815-2783 0000-0003-1252-6416 10.2210/pdb9gj3/pdb pdb_00009gj3 100 1 N PIXEL 2021-10-07 RIGAKU HyPix-6000HE SINGLE WAVELENGTH M x-ray 1 1.54184 1.0 1.54184 ROTATING ANODE RIGAKU PhotonJet-R 812.910 Peptide LYIQNY 1 syn polymer no no LYIQNY LYIQNY A polypeptide(L) n n n n n n 1 EVAPORATION, RECRYSTALLIZATION water (containing 0.1% TFA), 310K 310 repository Initial release 1 0 2025-07-09 Hungary Hungarian National Research, Development and Innovation Office 2018-1.2.1-NKP-2018-00005 European Union European Regional Development Fund VEKOP-2.3.2-16-2017-00014, VEKOP-2.3.3-15-2017-00018 Hungary Hungarian National Research, Development and Innovation Office Thematic Excellence Program Synth+ perczel.andras@ttk.elte.hu 0000-0003-1252-6416 Andras Perczel principal investigator/group leader N PDBE Y PDBE 2024-08-21 REL REL 32630 synthetic construct sample 1 6 N ideal 5 residue beta strand Other in silico model LEU 1 n 1 LEU 1 A TYR 2 n 2 TYR 2 A ILE 3 n 3 ILE 3 A GLN 4 n 4 GLN 4 A ASN 5 n 5 ASN 5 A TYR 6 n 6 TYR 6 A author_defined_assembly 1 monomeric none 0 0 1040 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 5.41 0.1097 0.1004 0.1014 1.50 21.16 87 762 849 10.25 100.00 0.0000 1 FREE R-VALUE 1.36 MOLECULAR REPLACEMENT 5.7338 0.9000 1.1100 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 1.50 21.16 0 58 0 0 58 0.0120 59 1.3870 80 0.0800 8 0.0098 10 16.4419 21 0.1097 0.1004 21.16 87 762 100.00 7.26 1.50 21.17 9GJ3 849 0.995 0.120 1 8.4 4.49 100 1.50 1.55 2.4 86 0.864 0.432 1 refinement PHENIX 1.20.1_4487 refinement BUSTER data reduction CrysalisPro data scaling CrysalisPro phasing PHASER 19 orthorhombic P 21 21 21 P 2ac 2ab x,y,z x+1/2,-y+1/2,-z -x,y+1/2,-z+1/2 -x+1/2,-y,z+1/2 N Structure of the amyloid-forming peptide LYIQNY 1 N N PROTEIN FIBRIL amyloid, PROTEIN FIBRIL 9GJ3 PDB 1 1 9GJ3 1 6 9GJ3 1 6 9GJ3 A 1 1 6 19 P 21 21 21 P 2ac 2ab