0.020239 0.000000 0.000000 0.000000 0.014686 0.000000 0.000000 0.000000 0.010067 0.00000 0.00000 0.00000 Huang, L. Lilley, D.M.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 49.409 68.094 99.339 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C9 H13 Br N3 O8 P 402.093 n 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C N 86 N N N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N C N 93 N C N 94 N BR N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 R C N 119 N O N 120 R C Y 121 N N Y 122 N C Y 123 N N Y 124 N C N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N N Y 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N O N 147 N H N 148 N H N 149 N K N 150 N MG N 151 N O N 152 N P N 153 N O N 154 N O N 155 N O N 156 N C N 157 R C N 158 N O N 159 S C N 160 N O N 161 R C N 162 N O N 163 R C N 164 N N N 165 N C N 166 N O N 167 N N N 168 N C N 169 N O N 170 N C N 171 N C N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing Y 136 N sing Y 137 N sing Y 138 N doub N 139 N sing Y 140 N sing N 141 N sing Y 142 N doub N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N doub N 187 N sing N 188 N sing To Be Published 0353 Structural basis for tRNA-mimicking by salivarius-1 RNA motif 10.2210/pdb9g4q/pdb pdb_00009g4q 100 1 N PIXEL 2018-11-29 DECTRIS EIGER X 16M SINGLE WAVELENGTH M x-ray 1 0.9198 1.0 I04 Diamond 0.9198 SYNCHROTRON DIAMOND BEAMLINE I04 16822.797 RNA (52-MER) 2 syn polymer 24.305 MAGNESIUM ION 2 syn non-polymer 39.098 POTASSIUM ION 4 syn non-polymer 18.015 water 44 nat water no yes C(CBV)UUGCAUCCACAUGAUUUGAGAUGGUCACACGUUUUGAGGGCGUGGUAAGG CCUUGCAUCCACAUGAUUUGAGAUGGUCACACGUUUUGAGGGCGUGGUAAGG A,B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.46 50.02 VAPOR DIFFUSION, HANGING DROP 6.0 0.04 M Magnesium Acetate, 0.05 M Sodium Cacodylate pH 6.0, 30% v/v 2-Methyl-2,4-pentanediol 290 -10.664 1 19 A 22 A 12 2.940 A_G22:C12_A 1 -14.081 -0.285 -0.122 -0.257 -1.108 1 20 A 24 A 11 10.113 A_U24:A11_A 2 -3.930 -0.163 -0.147 -0.189 -3.031 1 19 A 25 A 10 2.674 A_G25:C10_A 3 -2.174 -0.217 0.043 -0.244 -6.229 1 19 A 26 A 9 1.298 A_G26:C9_A 4 -5.569 -0.040 -0.299 -0.033 14.709 3 23 A 27 A 7 -73.788 A_U27:A7_A 5 -10.640 -0.762 -0.846 3.529 19.080 1 19 A 28 A 40 3.048 A_C28:G40_A 6 -9.941 0.157 -0.755 -0.279 13.436 6 A 18 A 38 -109.231 A_U18:G38_A 7 15.440 0.401 0.536 -5.750 5.897 1 20 A 21 A 37 6.925 A_A21:U37_A 8 -12.901 0.308 0.544 -0.106 14.390 6 A 36 A 20 -110.223 A_U36:G20_A 9 21.535 0.176 0.434 -5.718 11.099 3 23 A 39 A 19 63.901 A_A39:U19_A 10 5.843 0.650 -0.728 -3.620 4.842 1 28 A 35 A 41 -15.050 A_U35:G41_A 11 0.728 2.400 -0.189 -0.582 -10.831 1 28 A 34 A 42 -1.614 A_U34:G42_A 12 -12.505 2.274 0.478 -0.675 -6.386 1 19 A 33 A 43 0.814 A_G33:C43_A 13 -17.446 -0.181 0.052 -0.235 11.199 1 19 A 32 A 44 3.466 A_C32:G44_A 14 -15.154 0.155 -0.230 -0.102 -0.049 1 20 A 31 A 45 4.035 A_A31:U45_A 15 -4.997 0.045 0.099 -0.167 -3.208 1 19 A 30 A 46 5.854 A_C30:G46_A 16 -4.893 -0.145 -0.218 -0.080 0.255 1 19 A 6 A 47 -1.720 A_C6:G47_A 17 -10.391 0.335 0.412 0.010 1.616 1 28 A 5 A 48 -0.782 A_G5:U48_A 18 -16.212 -2.176 0.532 -0.584 1.980 1 20 A 4 A 49 -0.243 A_U4:A49_A 19 -19.016 0.146 0.179 -0.277 -3.424 1 20 A 3 A 50 1.437 A_U3:A50_A 20 -14.699 0.076 0.444 -0.142 1.534 1 19 A 2 A 51 -1.538 A_CBV2:G51_A 21 -20.707 0.148 0.085 -0.142 6.314 1 19 A 1 A 52 -0.708 A_C1:G52_A 22 -18.325 0.237 0.111 -0.043 -8.310 1 19 B 52 B 1 -0.528 B_G52:C1_B 23 -13.710 -0.152 0.084 -0.105 -6.220 1 19 B 51 B 2 -1.782 B_G51:CBV2_B 24 -15.539 -0.021 -0.200 -0.296 3.435 1 20 B 50 B 3 2.180 B_A50:U3_B 25 -12.977 -0.180 0.237 -0.070 -3.993 1 20 B 49 B 4 3.024 B_A49:U4_B 26 -16.380 -0.071 -0.067 -0.296 -0.283 1 28 B 48 B 5 2.049 B_U48:G5_B 27 -18.532 2.260 0.316 -0.543 -0.277 1 19 B 47 B 6 -1.821 B_G47:C6_B 28 -15.150 -0.206 0.233 -0.050 5.589 1 19 B 46 B 30 1.922 B_G46:C30_B 29 -10.058 -0.055 0.627 -0.470 0.598 1 20 B 45 B 31 -2.703 B_U45:A31_B 30 -5.795 0.441 0.124 -0.177 -10.303 1 19 B 44 B 32 2.640 B_G44:C32_B 31 -13.499 -0.494 -0.004 -0.152 6.294 1 19 B 43 B 33 1.190 B_C43:G33_B 32 -20.362 0.386 0.063 -0.204 9.962 1 28 B 42 B 34 -1.983 B_G42:U34_B 33 -15.754 -2.326 0.367 -0.611 -3.911 1 28 B 41 B 35 -13.759 B_G41:U35_B 34 -2.260 -2.495 -0.042 -0.761 -10.817 3 23 B 19 B 39 -66.577 B_U19:A39_B 35 -6.596 -0.950 0.693 3.728 -14.217 6 B 20 B 36 109.726 B_G20:U36_B 36 -22.378 -0.308 -0.505 5.648 -7.208 1 19 B 22 B 12 7.176 B_G22:C12_B 37 -16.324 -0.265 0.037 -0.182 7.437 1 20 B 24 B 11 13.040 B_U24:A11_B 38 -1.563 -0.406 -0.569 0.237 1.751 1 19 B 25 B 10 6.332 B_G25:C10_B 39 -5.634 0.148 -0.379 -0.188 -9.270 1 19 B 26 B 9 -0.985 B_G26:C9_B 40 -5.862 0.587 -0.777 0.051 1.145 3 23 B 27 B 7 -70.061 B_U27:A7_B 41 -8.605 -0.645 -0.155 3.915 8.295 1 19 B 28 B 40 -0.815 B_C28:G40_B 42 -10.846 0.003 -0.334 -0.289 9.553 6 B 18 B 38 -109.602 B_U18:G38_B 43 16.298 0.328 0.742 -5.580 7.085 1 20 B 21 B 37 4.830 B_A21:U37_B 44 -9.153 0.326 0.657 -0.470 2.545 49.456 A A 22 24 14.268 A A 12 11 2.753 11.830 -1.811 -1.021 AA_G22U24:A11C12_AA 1 -2.796 3.373 48.030 -1.943 1.993 2.655 32.139 A A 24 25 16.974 A A 11 10 3.218 9.261 -1.128 -1.814 AA_U24G25:C10A11_AA 2 -2.518 4.614 30.709 -4.801 1.622 2.792 31.924 A A 25 26 15.627 A A 10 9 3.340 8.479 0.715 -1.897 AA_G25G26:C9C10_AA 3 3.635 -6.700 30.596 -4.923 -0.667 2.822 58.991 A A 26 27 3.730 A A 9 7 2.997 3.670 -0.501 -3.315 AA_G26U27:A7C9_AA 4 -2.624 2.667 58.833 -3.534 0.389 1.713 10.932 A A 27 28 54.520 A A 7 40 2.937 8.175 0.963 0.070 AA_U27C28:G40A7_AA 5 5.887 -39.262 4.250 -12.769 4.405 -1.511 168.187 A A 18 21 6.395 A A 38 37 -3.566 12.287 0.560 -3.203 AA_U18A21:U37G38_AA 6 165.904 -86.346 59.895 -1.502 -1.747 -3.458 52.058 A A 36 39 -10.213 A A 20 19 -2.998 -8.790 1.082 1.983 AA_U36A39:U19G20_AA 7 -16.459 19.123 48.819 1.659 -0.109 -3.269 -138.241 A A 39 35 0.733 A A 19 41 -3.266 -1.370 0.115 -0.739 AA_A39U35:G41U19_AA 8 -1.654 -0.885 -138.233 0.387 0.071 -2.370 -36.259 A A 35 34 6.094 A A 41 42 -2.792 -3.738 0.638 1.301 AA_U35U34:G42G41_AA 9 -10.144 -16.535 -34.661 -2.515 2.173 -3.152 -46.654 A A 34 33 7.172 A A 42 43 -3.300 -5.666 0.189 1.141 AA_U34G33:C43G42_AA 10 1.675 2.121 -46.299 -1.910 0.099 -2.611 -34.421 A A 33 32 24.386 A A 43 44 -3.597 -14.021 0.022 1.716 AA_G33C32:G44C43_AA 11 2.584 4.494 -31.411 -5.075 -0.363 -2.730 -30.636 A A 32 31 13.104 A A 44 45 -3.056 -6.851 -0.010 1.059 AA_C32A31:U45G44_AA 12 -3.721 -7.118 -29.650 -3.220 0.642 -2.569 -30.161 A A 31 30 15.915 A A 45 46 -3.122 -8.180 0.764 1.769 AA_A31C30:G46U45_AA 13 1.235 2.402 -29.030 -4.877 1.245 -2.700 -44.191 A A 30 6 6.921 A A 46 47 -3.033 -5.192 1.105 2.028 AA_C30C6:G47G46_AA 14 -3.335 -4.447 -43.779 -3.123 1.744 -3.099 -44.849 A A 6 5 6.534 A A 47 48 -3.240 -4.976 0.070 1.173 AA_C6G5:U48G47_AA 15 0.318 0.418 -44.585 -1.976 0.064 -2.067 -28.706 A A 5 4 21.168 A A 48 49 -2.855 -10.195 -0.252 1.413 AA_G5U4:A49U48_AA 16 5.948 12.349 -26.213 -4.660 -1.564 -2.814 -33.912 A A 4 3 9.411 A A 49 50 -3.018 -5.461 0.087 0.977 AA_U4U3:A50A49_AA 17 -2.568 -4.425 -33.386 -2.462 0.519 -2.693 -33.682 A A 3 2 17.047 A A 50 51 -3.248 -9.735 -0.136 1.433 AA_U3CBV2:G51A50_AA 18 2.597 4.548 -32.181 -3.948 -0.628 -2.998 -35.527 A A 2 1 11.057 A A 51 52 -3.322 -6.709 0.201 1.472 AA_CBV2C1:G52G51_AA 19 0.213 0.351 -34.907 -3.368 0.300 -2.718 -32.666 A B 1 52 8.334 A B 52 1 -2.909 -4.672 0.179 1.179 AB_C1G52:C1G52_BA 20 0.223 0.398 -32.339 -2.796 0.285 -2.919 -33.661 B B 52 51 9.921 B B 1 2 -3.271 -5.716 -0.308 1.739 BB_G52G51:CBV2C1_BB 21 1.731 3.004 -33.142 -3.892 -0.802 -2.963 -33.417 B B 51 50 15.987 B B 2 3 -3.498 -9.072 0.144 1.456 BB_G51A50:U3CBV2_BB 22 -2.939 -5.179 -32.065 -4.048 0.741 -2.764 -32.141 B B 50 49 9.115 B B 3 4 -2.985 -5.021 -0.062 1.130 BB_A50A49:U4U3_BB 23 2.696 4.895 -31.645 -2.837 -0.539 -1.867 -29.636 B B 49 48 28.594 B B 4 5 -2.965 -13.966 0.260 1.401 BB_A49U48:G5U4_BB 24 -5.772 -11.818 -25.568 -5.085 1.478 -3.061 -44.694 B B 48 47 8.196 B B 5 6 -3.237 -6.214 -0.383 1.151 BB_U48G47:C6G5_BB 25 -0.502 -0.662 -44.279 -2.062 -0.459 -3.198 -39.228 B B 47 46 3.661 B B 6 30 -3.302 -2.455 -0.613 2.147 BB_G47G46:C30C6_BB 26 -2.434 -3.629 -39.081 -3.490 -0.623 -2.037 -30.437 B B 46 45 19.384 B B 30 31 -2.807 -9.986 -0.657 1.747 BB_G46U45:A31C30_BB 27 2.414 4.685 -28.690 -4.853 -1.620 -2.870 -34.333 B B 45 44 6.503 B B 31 32 -3.008 -3.829 0.392 1.271 BB_U45G44:C32A31_BB 28 1.912 3.247 -34.073 -2.694 0.395 -2.570 -33.097 B B 44 43 22.533 B B 32 33 -3.463 -12.532 -0.116 1.752 BB_G44C43:G33C32_BB 29 0.242 0.435 -30.693 -5.104 -0.243 -3.078 -47.447 B B 43 42 9.686 B B 33 34 -3.260 -7.763 -0.138 0.930 BB_C43G42:U34G33_BB 30 -0.163 -0.204 -46.844 -1.767 -0.159 -2.476 -36.398 B B 42 41 8.171 B B 34 35 -2.851 -5.045 -0.386 1.405 BB_G42G41:U35U34_BB 31 8.442 13.674 -35.087 -2.832 -1.593 -0.269 -179.070 B B 41 19 -82.940 B B 35 39 -0.554 165.679 3.119 0.660 BB_G41U19:A39U35_BB 32 -64.759 -32.418 -127.843 -0.241 1.594 3.481 -51.111 B B 19 20 -9.487 B B 39 36 3.082 8.023 -0.982 -1.904 BB_U19G20:U36A39_BB 33 16.640 19.676 -47.867 1.627 0.063 2.334 47.097 B B 22 24 14.188 B B 12 11 2.628 11.238 -1.784 -0.827 BB_G22U24:A11C12_BB 34 1.109 -1.400 45.798 -1.745 2.303 2.684 32.719 B B 24 25 22.005 B B 11 10 3.442 12.116 -0.902 -1.469 BB_U24G25:C10A11_BB 35 -0.228 0.414 30.450 -4.643 1.563 2.671 33.492 B B 25 26 21.486 B B 10 9 3.546 12.109 0.266 -1.861 BB_G25G26:C9C10_BB 36 2.007 -3.560 31.223 -5.196 -0.137 3.034 56.765 B B 26 27 2.434 B B 9 7 3.130 2.309 -0.536 -3.609 BB_G26U27:A7C9_BB 37 -7.250 7.645 56.295 -3.917 0.183 2.179 9.232 B B 27 28 34.378 B B 7 40 3.022 4.508 0.970 0.117 BB_U27C28:G40A7_BB 38 6.821 -52.022 4.291 -10.034 10.261 -1.373 166.472 B B 18 21 8.797 B B 38 37 -3.700 16.796 0.876 -3.126 BB_U18A21:U37G38_BB 39 163.539 -85.655 59.592 -1.423 -1.908 repository Initial release 1 0 2025-07-30 United Kingdom Cancer Research UK A18604 China National Natural Science Foundation of China (NSFC) 32171191 huanglin36@mail.sysu.edu.cn 0000-0002-2121-365X Lin Huang principal investigator/group leader d.m.j.lilley@dundee.ac.uk 0000-0001-6882-2818 David Lilley M.J principal investigator/group leader N PDBE Y PDBE 2024-07-16 REL REL CBV CBV SUBJECT OF INVESTIGATION K K SUBJECT OF INVESTIGATION MG MG SUBJECT OF INVESTIGATION MG MAGNESIUM ION K POTASSIUM ION HOH water 362948 Ligilactobacillus salivarius UCC118 sample 1 52 Y N MG 201 2 MG MG 201 A K 202 3 K K 202 A K 101 3 K K 101 B K 102 3 K K 102 B K 103 3 K K 103 B MG 104 2 MG MG 104 B HOH 301 4 HOH HOH 301 A HOH 302 4 HOH HOH 302 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A HOH 306 4 HOH HOH 306 A HOH 307 4 HOH HOH 307 A HOH 308 4 HOH HOH 308 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 311 4 HOH HOH 311 A HOH 312 4 HOH HOH 312 A HOH 313 4 HOH HOH 313 A HOH 314 4 HOH HOH 314 A HOH 315 4 HOH HOH 315 A HOH 316 4 HOH HOH 316 A HOH 317 4 HOH HOH 317 A HOH 318 4 HOH HOH 318 A HOH 319 4 HOH HOH 319 A HOH 320 4 HOH HOH 320 A HOH 321 4 HOH HOH 321 A HOH 322 4 HOH HOH 322 A HOH 201 4 HOH HOH 201 B HOH 202 4 HOH HOH 202 B HOH 203 4 HOH HOH 203 B HOH 204 4 HOH HOH 204 B HOH 205 4 HOH HOH 205 B HOH 206 4 HOH HOH 206 B HOH 207 4 HOH HOH 207 B HOH 208 4 HOH HOH 208 B HOH 209 4 HOH HOH 209 B HOH 210 4 HOH HOH 210 B HOH 211 4 HOH HOH 211 B HOH 212 4 HOH HOH 212 B HOH 213 4 HOH HOH 213 B HOH 214 4 HOH HOH 214 B HOH 215 4 HOH HOH 215 B HOH 216 4 HOH HOH 216 B HOH 217 4 HOH HOH 217 B HOH 218 4 HOH HOH 218 B HOH 219 4 HOH HOH 219 B HOH 220 4 HOH HOH 220 B HOH 221 4 HOH HOH 221 B HOH 222 4 HOH HOH 222 B C 1 n 1 C 1 A CBV 2 n 2 CBV 2 A U 3 n 3 U 3 A U 4 n 4 U 4 A G 5 n 5 G 5 A C 6 n 6 C 6 A A 7 n 7 A 7 A U 8 n 8 U 8 A C 9 n 9 C 9 A C 10 n 10 C 10 A A 11 n 11 A 11 A C 12 n 12 C 12 A A 13 n 13 A 13 A U 14 n 14 U 14 A G 15 n 15 G 15 A A 16 n 16 A 16 A U 17 n 17 U 17 A U 18 n 18 U 18 A U 19 n 19 U 19 A G 20 n 20 G 20 A A 21 n 21 A 21 A G 22 n 22 G 22 A A 23 n 23 A 23 A U 24 n 24 U 24 A G 25 n 25 G 25 A G 26 n 26 G 26 A U 27 n 27 U 27 A C 28 n 28 C 28 A A 29 n 29 A 29 A C 30 n 30 C 30 A A 31 n 31 A 31 A C 32 n 32 C 32 A G 33 n 33 G 33 A U 34 n 34 U 34 A U 35 n 35 U 35 A U 36 n 36 U 36 A U 37 n 37 U 37 A G 38 n 38 G 38 A A 39 n 39 A 39 A G 40 n 40 G 40 A G 41 n 41 G 41 A G 42 n 42 G 42 A C 43 n 43 C 43 A G 44 n 44 G 44 A U 45 n 45 U 45 A G 46 n 46 G 46 A G 47 n 47 G 47 A U 48 n 48 U 48 A A 49 n 49 A 49 A A 50 n 50 A 50 A G 51 n 51 G 51 A G 52 n 52 G 52 A C 1 n 1 C 1 B CBV 2 n 2 CBV 2 B U 3 n 3 U 3 B U 4 n 4 U 4 B G 5 n 5 G 5 B C 6 n 6 C 6 B A 7 n 7 A 7 B U 8 n 8 U 8 B C 9 n 9 C 9 B C 10 n 10 C 10 B A 11 n 11 A 11 B C 12 n 12 C 12 B A 13 n 13 A 13 B U 14 n 14 U 14 B G 15 n 15 G 15 B A 16 n 16 A 16 B U 17 n 17 U 17 B U 18 n 18 U 18 B U 19 n 19 U 19 B G 20 n 20 G 20 B A 21 n 21 A 21 B G 22 n 22 G 22 B A 23 n 23 A 23 B U 24 n 24 U 24 B G 25 n 25 G 25 B G 26 n 26 G 26 B U 27 n 27 U 27 B C 28 n 28 C 28 B A 29 n 29 A 29 B C 30 n 30 C 30 B A 31 n 31 A 31 B C 32 n 32 C 32 B G 33 n 33 G 33 B U 34 n 34 U 34 B U 35 n 35 U 35 B U 36 n 36 U 36 B U 37 n 37 U 37 B G 38 n 38 G 38 B A 39 n 39 A 39 B G 40 n 40 G 40 B G 41 n 41 G 41 B G 42 n 42 G 42 B C 43 n 43 C 43 B G 44 n 44 G 44 B U 45 n 45 U 45 B G 46 n 46 G 46 B G 47 n 47 G 47 B U 48 n 48 U 48 B A 49 n 49 A 49 B A 50 n 50 A 50 B G 51 n 51 G 51 B G 52 n 52 G 52 B 1.4215 -0.4841 -0.4312 0.7923 1.6257 3.5756 -0.2517 0.0409 -0.4154 0.2263 -0.2206 -0.0317 1.5245 -0.2903 0.4485 0.6390 -0.0281 0.0522 0.4534 -0.0531 0.4785 refined 19.1963 21.9590 46.0280 X-RAY DIFFRACTION 2.3470 0.8547 -1.9127 1.4051 -0.0471 2.9810 -0.0177 -0.2833 0.0264 -0.1165 -0.0042 0.1205 0.6386 0.0607 0.0937 0.4988 -0.0959 0.0062 0.4521 -0.0189 0.3723 refined 17.4873 29.0272 57.8132 X-RAY DIFFRACTION 2.7646 0.3669 0.7166 3.0328 0.7271 5.2893 0.0415 -0.1691 0.1052 -0.2281 -1.5775 -1.9983 1.3296 1.5780 1.5208 1.3632 0.4406 0.1675 1.2618 0.3222 1.0039 refined 28.4296 14.8488 57.6949 X-RAY DIFFRACTION 1.8433 0.4242 -1.3687 0.2178 0.0102 2.6552 0.0081 -0.0720 -0.1683 0.0653 0.1262 -0.1561 0.4180 0.6255 -0.0399 0.4234 0.0384 -0.0204 0.4639 -0.0138 0.3811 refined 25.2716 31.0498 39.8728 X-RAY DIFFRACTION 3.0032 -0.4764 -0.1687 1.0181 0.8407 1.3157 0.7434 -0.6081 0.0729 0.1462 -0.4520 -0.0426 -0.1754 -0.2480 0.1810 0.4505 -0.0449 -0.0172 0.6764 -0.0145 0.5178 refined 19.1734 30.1320 6.7926 X-RAY DIFFRACTION 1.2690 0.1653 -0.4581 0.1239 -0.4488 1.2385 -0.1647 -0.3042 0.3358 0.1457 0.0335 0.1412 -0.5909 0.1689 0.1651 0.4659 0.0001 -0.0664 0.6198 0.0797 0.5082 refined 29.7965 31.4620 -13.0058 X-RAY DIFFRACTION 1.8905 -0.4728 1.0154 0.0898 -0.2502 0.5301 -0.1873 1.0765 -0.1551 -0.1070 -0.0960 -0.3596 0.1383 0.4458 0.3066 0.4954 -0.0037 0.0026 0.8833 0.0386 0.4764 refined 28.3225 35.0623 -28.6142 X-RAY DIFFRACTION 2.2434 0.3179 1.3083 2.9276 -2.4139 4.3372 0.0293 0.7204 -0.1742 -0.4010 -0.2229 -0.1790 0.1140 0.7046 0.0837 0.3620 -0.0100 0.0005 0.5081 -0.0498 0.3747 refined 18.0014 30.9355 -22.5232 X-RAY DIFFRACTION 2.4145 -1.1313 -1.5311 2.4662 -0.1188 1.3269 -0.1548 0.9170 -1.2745 -0.4040 -0.4860 0.6384 0.6973 -0.3720 0.6492 0.6155 0.1905 0.0218 0.9423 0.0298 0.8098 refined 35.1772 25.2094 -22.3813 X-RAY DIFFRACTION 2.3799 0.7178 -1.9578 1.0409 -1.2066 1.9954 -0.4025 -0.4377 -0.5097 0.2849 0.0325 -0.3140 0.3102 0.5086 0.2654 0.5243 0.0350 -0.0376 0.5552 0.1045 0.5815 refined 28.7095 21.3976 -5.1398 X-RAY DIFFRACTION 2.4260 -0.4872 -1.1094 0.7630 -0.7389 1.7663 -0.0799 -0.0318 -0.5331 -0.0490 -0.0039 0.0990 0.4072 -0.2859 -0.0072 0.4334 -0.0332 -0.0030 0.4728 -0.0492 0.4856 refined 13.7829 21.6123 -14.1885 X-RAY DIFFRACTION 2.8967 -0.3477 -1.1887 0.7083 -0.5470 2.0313 0.2163 -0.9720 -0.2386 0.1952 0.0911 -0.3107 0.1806 0.2444 -0.0759 0.4042 0.0263 -0.0431 0.5925 0.0464 0.4485 refined 18.5904 25.8990 4.7270 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 CHAIN 'B' AND (RESID 1 THROUGH 16 ) X-RAY DIFFRACTION 2 CHAIN 'B' AND (RESID 17 THROUGH 21 ) X-RAY DIFFRACTION 3 CHAIN 'B' AND (RESID 22 THROUGH 26 ) X-RAY DIFFRACTION 4 CHAIN 'B' AND (RESID 27 THROUGH 52 ) X-RAY DIFFRACTION 5 CHAIN 'A' AND (RESID 1 THROUGH 6 ) X-RAY DIFFRACTION 6 CHAIN 'A' AND (RESID 7 THROUGH 11 ) X-RAY DIFFRACTION 7 CHAIN 'A' AND (RESID 12 THROUGH 16 ) X-RAY DIFFRACTION 8 CHAIN 'A' AND (RESID 17 THROUGH 21 ) X-RAY DIFFRACTION 9 CHAIN 'A' AND (RESID 22 THROUGH 26 ) X-RAY DIFFRACTION 10 CHAIN 'A' AND (RESID 27 THROUGH 31 ) X-RAY DIFFRACTION 11 CHAIN 'A' AND (RESID 32 THROUGH 41 ) X-RAY DIFFRACTION 12 CHAIN 'A' AND (RESID 42 THROUGH 52 ) author_and_software_defined_assembly PISA 2 dimeric none 2610 -17 16990 A G 33 A O6 G 33 1_555 A K 202 D K K 1_555 A U 34 A O4 U 34 1_555 76.0 A G 33 A O6 G 33 1_555 A K 202 D K K 1_555 A G 42 A O6 G 42 1_555 71.4 A U 34 A O4 U 34 1_555 A K 202 D K K 1_555 A G 42 A O6 G 42 1_555 78.5 A G 41 A OP1 G 41 1_555 A MG 201 C MG MG 1_555 A G 42 A OP2 G 42 1_555 83.7 A G 41 A OP1 G 41 1_555 A MG 201 C MG MG 1_555 A HOH 303 I O HOH 1_555 54.7 A G 42 A OP2 G 42 1_555 A MG 201 C MG MG 1_555 A HOH 303 I O HOH 1_555 135.4 A G 41 A OP1 G 41 1_555 A MG 201 C MG MG 1_555 A HOH 308 I O HOH 1_555 66.0 A G 42 A OP2 G 42 1_555 A MG 201 C MG MG 1_555 A HOH 308 I O HOH 1_555 64.8 A HOH 303 I O HOH 1_555 A MG 201 C MG MG 1_555 A HOH 308 I O HOH 1_555 105.1 B U 4 B O4 U 4 1_555 B K 103 G K K 1_555 B G 5 B O6 G 5 1_555 82.1 B U 4 B O4 U 4 1_555 B K 103 G K K 1_555 B G 47 B O6 G 47 1_555 147.2 B G 5 B O6 G 5 1_555 B K 103 G K K 1_555 B G 47 B O6 G 47 1_555 65.1 B U 4 B O4 U 4 1_555 B K 103 G K K 1_555 B U 48 B O4 U 48 1_555 102.3 B G 5 B O6 G 5 1_555 B K 103 G K K 1_555 B U 48 B O4 U 48 1_555 82.9 B G 47 B O6 G 47 1_555 B K 103 G K K 1_555 B U 48 B O4 U 48 1_555 74.7 B U 4 B O4 U 4 1_555 B K 103 G K K 1_555 B HOH 211 J O HOH 1_555 69.1 B G 5 B O6 G 5 1_555 B K 103 G K K 1_555 B HOH 211 J O HOH 1_555 73.5 B G 47 B O6 G 47 1_555 B K 103 G K K 1_555 B HOH 211 J O HOH 1_555 100.0 B U 48 B O4 U 48 1_555 B K 103 G K K 1_555 B HOH 211 J O HOH 1_555 155.6 B U 4 B O4 U 4 1_555 B K 103 G K K 1_555 B HOH 220 J O HOH 1_555 66.6 B G 5 B O6 G 5 1_555 B K 103 G K K 1_555 B HOH 220 J O HOH 1_555 135.2 B G 47 B O6 G 47 1_555 B K 103 G K K 1_555 B HOH 220 J O HOH 1_555 138.7 B U 48 B O4 U 48 1_555 B K 103 G K K 1_555 B HOH 220 J O HOH 1_555 74.1 B HOH 211 J O HOH 1_555 B K 103 G K K 1_555 B HOH 220 J O HOH 1_555 119.3 B G 33 B O6 G 33 1_555 B K 102 F K K 1_555 B U 34 B O4 U 34 1_555 73.0 B G 33 B O6 G 33 1_555 B K 102 F K K 1_555 B G 42 B O6 G 42 1_555 63.7 B U 34 B O4 U 34 1_555 B K 102 F K K 1_555 B G 42 B O6 G 42 1_555 76.8 B G 41 B OP1 G 41 1_555 B MG 104 H MG MG 1_555 B G 42 B OP2 G 42 1_555 84.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B C8 A 23 B C8 A 23 1 Y 1 B N7 A 23 B N7 A 23 1 Y 1 B C5 A 23 B C5 A 23 1 Y 1 B C6 A 23 B C6 A 23 1 Y 1 B N6 A 23 B N6 A 23 1 Y 1 B N1 A 23 B N1 A 23 1 Y 1 B C2 A 23 B C2 A 23 1 Y 1 B N3 A 23 B N3 A 23 1 Y 1 B C4 A 23 B C4 A 23 1 Y 1 B B OP1 O U HOH 8 201 1.86 1 A A O O HOH HOH 304 322 2.19 1 -21.01 2.20 105.20 84.19 A A A O3' P OP2 CBV U U 2 3 3 Y 1 -23.52 2.20 105.20 81.68 A A A O3' P OP1 CBV U U 2 3 3 Y 1 10.78 1.50 119.60 130.38 A A A OP1 P OP2 U U U 3 3 3 N 1 -21.52 2.20 105.20 83.68 B B B O3' P OP2 CBV U U 2 3 3 Y 1 -23.53 2.20 105.20 81.67 B B B O3' P OP1 CBV U U 2 3 3 Y 1 10.27 1.50 119.60 129.87 B B B OP1 P OP2 U U U 3 3 3 N 0.255 0.225 0.226 1.99 44.24 2245 44110 5.090 99.3 0.320 1 FREE R-VALUE 1.330 SAD 37.260 0.90 1.11 1.99 44.24 44 2257 6 2207 0 0.002 2465 1.020 3841 14.753 1239 0.127 516 0.002 103 0.4118 0.4148 2.0330 120 2596 98.00 0.3790 0.3955 2.0802 156 2607 100.00 0.4406 0.3599 2.1323 140 2644 100.00 0.3402 0.3370 2.1899 117 2634 100.00 0.3608 0.3322 2.2544 144 2637 99.00 0.4144 0.3337 2.3271 121 2637 100.00 0.4275 0.3190 2.4103 159 2632 100.00 0.3603 0.3444 2.5068 128 2632 100.00 0.2942 0.3041 2.6208 133 2637 100.00 0.3802 0.3123 2.7590 127 2628 100.00 0.3097 0.2965 2.9318 134 2641 100.00 0.2892 0.2426 3.1581 126 2643 99.00 0.2535 0.2010 3.4758 179 2566 99.00 0.2123 0.1755 3.9785 152 2622 100.00 0.1801 0.1503 5.0114 170 2624 100.00 0.1979 0.1631 44.24 139 2485 95.00 1.99 56.17 9G4Q 44110 1.4 1.00 0.109 0.022 1 15.6 25.3 100 3.504 1.99 2.02 1125 0.680 0.697 1 25.8 98.51 data reduction xia2 data scaling xia2 phasing PHENIX refinement PHENIX (1.14_3260: ???) N Crystal structure of the salivarius-1 RNA motif 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 2 N N 4 N N 4 N N covale 1.608 both A C 1 A O3' C 1 1_555 A CBV 2 A P CBV 2 1_555 covale 1.611 one A CBV 2 A O3' CBV 2 1_555 A U 3 A P U 3 1_555 covale 1.608 both B C 1 B O3' C 1 1_555 B CBV 2 B P CBV 2 1_555 covale 1.610 one B CBV 2 B O3' CBV 2 1_555 B U 3 B P U 3 1_555 metalc 2.756 A G 33 A O6 G 33 1_555 A K 202 D K K 1_555 metalc 2.876 A U 34 A O4 U 34 1_555 A K 202 D K K 1_555 metalc 2.310 A G 41 A OP1 G 41 1_555 A MG 201 C MG MG 1_555 metalc 2.606 A G 42 A OP2 G 42 1_555 A MG 201 C MG MG 1_555 metalc 2.857 A G 42 A O6 G 42 1_555 A K 202 D K K 1_555 metalc 2.966 A MG 201 C MG MG 1_555 A HOH 303 I O HOH 1_555 metalc 2.607 A MG 201 C MG MG 1_555 A HOH 308 I O HOH 1_555 metalc 2.961 B U 4 B O4 U 4 1_555 B K 103 G K K 1_555 metalc 2.819 B G 5 B O6 G 5 1_555 B K 103 G K K 1_555 metalc 2.875 B G 33 B O6 G 33 1_555 B K 102 F K K 1_555 metalc 2.979 B U 34 B O4 U 34 1_555 B K 102 F K K 1_555 metalc 2.399 B G 41 B OP1 G 41 1_555 B MG 104 H MG MG 1_555 metalc 2.961 B G 42 B O6 G 42 1_555 B K 102 F K K 1_555 metalc 2.645 B G 42 B OP2 G 42 1_555 B MG 104 H MG MG 1_555 metalc 3.031 B G 47 B O6 G 47 1_555 B K 103 G K K 1_555 metalc 2.870 B U 48 B O4 U 48 1_555 B K 103 G K K 1_555 metalc 2.982 B K 101 E K K 1_555 B HOH 222 J O HOH 1_555 metalc 2.866 B K 103 G K K 1_555 B HOH 211 J O HOH 1_555 metalc 2.693 B K 103 G K K 1_555 B HOH 220 J O HOH 1_555 hydrog WATSON-CRICK A C 1 A N3 C 1 1_555 A G 52 A N1 G 52 1_555 hydrog WATSON-CRICK A C 1 A N4 C 1 1_555 A G 52 A O6 G 52 1_555 hydrog WATSON-CRICK A C 1 A O2 C 1 1_555 A G 52 A N2 G 52 1_555 hydrog WATSON-CRICK A CBV 2 A N3 CBV 2 1_555 A G 51 A N1 G 51 1_555 hydrog WATSON-CRICK A CBV 2 A N4 CBV 2 1_555 A G 51 A O6 G 51 1_555 hydrog WATSON-CRICK A CBV 2 A O2 CBV 2 1_555 A G 51 A N2 G 51 1_555 hydrog WATSON-CRICK A U 3 A N3 U 3 1_555 A A 50 A N1 A 50 1_555 hydrog WATSON-CRICK A U 3 A O4 U 3 1_555 A A 50 A N6 A 50 1_555 hydrog WATSON-CRICK A U 4 A N3 U 4 1_555 A A 49 A N1 A 49 1_555 hydrog WATSON-CRICK A U 4 A O4 U 4 1_555 A A 49 A N6 A 49 1_555 hydrog TYPE_28_PAIR A G 5 A N1 G 5 1_555 A U 48 A O2 U 48 1_555 hydrog TYPE_28_PAIR A G 5 A O6 G 5 1_555 A U 48 A N3 U 48 1_555 hydrog WATSON-CRICK A C 6 A N3 C 6 1_555 A G 47 A N1 G 47 1_555 hydrog WATSON-CRICK A C 6 A N4 C 6 1_555 A G 47 A O6 G 47 1_555 hydrog WATSON-CRICK A C 6 A O2 C 6 1_555 A G 47 A N2 G 47 1_555 hydrog HOOGSTEEN A A 7 A N6 A 7 1_555 A U 27 A O4 U 27 1_555 hydrog HOOGSTEEN A A 7 A N7 A 7 1_555 A U 27 A N3 U 27 1_555 hydrog U-U MISPAIR A U 8 A N3 U 8 1_555 A U 19 A O2 U 19 1_555 hydrog WATSON-CRICK A C 9 A N3 C 9 1_555 A G 26 A N1 G 26 1_555 hydrog WATSON-CRICK A C 9 A N4 C 9 1_555 A G 26 A O6 G 26 1_555 hydrog WATSON-CRICK A C 9 A O2 C 9 1_555 A G 26 A N2 G 26 1_555 hydrog WATSON-CRICK A C 10 A N3 C 10 1_555 A G 25 A N1 G 25 1_555 hydrog WATSON-CRICK A C 10 A N4 C 10 1_555 A G 25 A O6 G 25 1_555 hydrog WATSON-CRICK A C 10 A O2 C 10 1_555 A G 25 A N2 G 25 1_555 hydrog WATSON-CRICK A A 11 A N1 A 11 1_555 A U 24 A N3 U 24 1_555 hydrog WATSON-CRICK A A 11 A N6 A 11 1_555 A U 24 A O4 U 24 1_555 hydrog WATSON-CRICK A C 12 A N3 C 12 1_555 A G 22 A N1 G 22 1_555 hydrog WATSON-CRICK A C 12 A N4 C 12 1_555 A G 22 A O6 G 22 1_555 hydrog WATSON-CRICK A C 12 A O2 C 12 1_555 A G 22 A N2 G 22 1_555 hydrog REVERSED HOOGSTEEN A U 17 A N3 U 17 1_555 A A 21 A N7 A 21 1_555 hydrog REVERSED HOOGSTEEN A U 17 A O2 U 17 1_555 A A 21 A N6 A 21 1_555 hydrog U-G MISPAIR A U 18 A O2 U 18 1_555 A G 38 A N1 G 38 1_555 hydrog HOOGSTEEN A U 19 A N3 U 19 1_555 A A 39 A N7 A 39 1_555 hydrog HOOGSTEEN A U 19 A O4 U 19 1_555 A A 39 A N6 A 39 1_555 hydrog G-U MISPAIR A G 20 A N1 G 20 1_555 A U 36 A O2 U 36 1_555 hydrog WATSON-CRICK A A 21 A N1 A 21 1_555 A U 37 A N3 U 37 1_555 hydrog WATSON-CRICK A A 21 A N6 A 21 1_555 A U 37 A O4 U 37 1_555 hydrog WATSON-CRICK A C 28 A N3 C 28 1_555 A G 40 A N1 G 40 1_555 hydrog WATSON-CRICK A C 28 A N4 C 28 1_555 A G 40 A O6 G 40 1_555 hydrog WATSON-CRICK A C 28 A O2 C 28 1_555 A G 40 A N2 G 40 1_555 hydrog WATSON-CRICK A C 30 A N3 C 30 1_555 A G 46 A N1 G 46 1_555 hydrog WATSON-CRICK A C 30 A N4 C 30 1_555 A G 46 A O6 G 46 1_555 hydrog WATSON-CRICK A C 30 A O2 C 30 1_555 A G 46 A N2 G 46 1_555 hydrog WATSON-CRICK A A 31 A N1 A 31 1_555 A U 45 A N3 U 45 1_555 hydrog WATSON-CRICK A A 31 A N6 A 31 1_555 A U 45 A O4 U 45 1_555 hydrog WATSON-CRICK A C 32 A N3 C 32 1_555 A G 44 A N1 G 44 1_555 hydrog WATSON-CRICK A C 32 A N4 C 32 1_555 A G 44 A O6 G 44 1_555 hydrog WATSON-CRICK A C 32 A O2 C 32 1_555 A G 44 A N2 G 44 1_555 hydrog WATSON-CRICK A G 33 A N1 G 33 1_555 A C 43 A N3 C 43 1_555 hydrog WATSON-CRICK A G 33 A N2 G 33 1_555 A C 43 A O2 C 43 1_555 hydrog WATSON-CRICK A G 33 A O6 G 33 1_555 A C 43 A N4 C 43 1_555 hydrog TYPE_28_PAIR A U 34 A N3 U 34 1_555 A G 42 A O6 G 42 1_555 hydrog TYPE_28_PAIR A U 34 A O2 U 34 1_555 A G 42 A N1 G 42 1_555 hydrog TYPE_28_PAIR A U 35 A N3 U 35 1_555 A G 41 A O6 G 41 1_555 hydrog TYPE_28_PAIR A U 35 A O2 U 35 1_555 A G 41 A N1 G 41 1_555 hydrog WATSON-CRICK B C 1 B N3 C 1 1_555 B G 52 B N1 G 52 1_555 hydrog WATSON-CRICK B C 1 B N4 C 1 1_555 B G 52 B O6 G 52 1_555 hydrog WATSON-CRICK B C 1 B O2 C 1 1_555 B G 52 B N2 G 52 1_555 hydrog WATSON-CRICK B CBV 2 B N3 CBV 2 1_555 B G 51 B N1 G 51 1_555 hydrog WATSON-CRICK B CBV 2 B N4 CBV 2 1_555 B G 51 B O6 G 51 1_555 hydrog WATSON-CRICK B CBV 2 B O2 CBV 2 1_555 B G 51 B N2 G 51 1_555 hydrog WATSON-CRICK B U 3 B N3 U 3 1_555 B A 50 B N1 A 50 1_555 hydrog WATSON-CRICK B U 3 B O4 U 3 1_555 B A 50 B N6 A 50 1_555 hydrog WATSON-CRICK B U 4 B N3 U 4 1_555 B A 49 B N1 A 49 1_555 hydrog WATSON-CRICK B U 4 B O4 U 4 1_555 B A 49 B N6 A 49 1_555 hydrog TYPE_28_PAIR B G 5 B N1 G 5 1_555 B U 48 B O2 U 48 1_555 hydrog TYPE_28_PAIR B G 5 B O6 G 5 1_555 B U 48 B N3 U 48 1_555 hydrog WATSON-CRICK B C 6 B N3 C 6 1_555 B G 47 B N1 G 47 1_555 hydrog WATSON-CRICK B C 6 B N4 C 6 1_555 B G 47 B O6 G 47 1_555 hydrog WATSON-CRICK B C 6 B O2 C 6 1_555 B G 47 B N2 G 47 1_555 hydrog HOOGSTEEN B A 7 B N6 A 7 1_555 B U 27 B O4 U 27 1_555 hydrog HOOGSTEEN B A 7 B N7 A 7 1_555 B U 27 B N3 U 27 1_555 hydrog U-U MISPAIR B U 8 B N3 U 8 1_555 B U 19 B O2 U 19 1_555 hydrog WATSON-CRICK B C 9 B N3 C 9 1_555 B G 26 B N1 G 26 1_555 hydrog WATSON-CRICK B C 9 B N4 C 9 1_555 B G 26 B O6 G 26 1_555 hydrog WATSON-CRICK B C 9 B O2 C 9 1_555 B G 26 B N2 G 26 1_555 hydrog WATSON-CRICK B C 10 B N3 C 10 1_555 B G 25 B N1 G 25 1_555 hydrog WATSON-CRICK B C 10 B N4 C 10 1_555 B G 25 B O6 G 25 1_555 hydrog WATSON-CRICK B C 10 B O2 C 10 1_555 B G 25 B N2 G 25 1_555 hydrog WATSON-CRICK B A 11 B N1 A 11 1_555 B U 24 B N3 U 24 1_555 hydrog WATSON-CRICK B A 11 B N6 A 11 1_555 B U 24 B O4 U 24 1_555 hydrog WATSON-CRICK B C 12 B N3 C 12 1_555 B G 22 B N1 G 22 1_555 hydrog WATSON-CRICK B C 12 B N4 C 12 1_555 B G 22 B O6 G 22 1_555 hydrog WATSON-CRICK B C 12 B O2 C 12 1_555 B G 22 B N2 G 22 1_555 hydrog REVERSED HOOGSTEEN B U 17 B N3 U 17 1_555 B A 21 B N7 A 21 1_555 hydrog REVERSED HOOGSTEEN B U 17 B O2 U 17 1_555 B A 21 B N6 A 21 1_555 hydrog U-G MISPAIR B U 18 B O2 U 18 1_555 B G 38 B N1 G 38 1_555 hydrog HOOGSTEEN B U 19 B N3 U 19 1_555 B A 39 B N7 A 39 1_555 hydrog HOOGSTEEN B U 19 B O4 U 19 1_555 B A 39 B N6 A 39 1_555 hydrog G-U MISPAIR B G 20 B N1 G 20 1_555 B U 36 B O2 U 36 1_555 hydrog WATSON-CRICK B A 21 B N1 A 21 1_555 B U 37 B N3 U 37 1_555 hydrog WATSON-CRICK B A 21 B N6 A 21 1_555 B U 37 B O4 U 37 1_555 hydrog WATSON-CRICK B C 28 B N3 C 28 1_555 B G 40 B N1 G 40 1_555 hydrog WATSON-CRICK B C 28 B N4 C 28 1_555 B G 40 B O6 G 40 1_555 hydrog WATSON-CRICK B C 28 B O2 C 28 1_555 B G 40 B N2 G 40 1_555 hydrog WATSON-CRICK B C 30 B N3 C 30 1_555 B G 46 B N1 G 46 1_555 hydrog WATSON-CRICK B C 30 B N4 C 30 1_555 B G 46 B O6 G 46 1_555 hydrog WATSON-CRICK B C 30 B O2 C 30 1_555 B G 46 B N2 G 46 1_555 hydrog WATSON-CRICK B A 31 B N1 A 31 1_555 B U 45 B N3 U 45 1_555 hydrog WATSON-CRICK B A 31 B N6 A 31 1_555 B U 45 B O4 U 45 1_555 hydrog WATSON-CRICK B C 32 B N3 C 32 1_555 B G 44 B N1 G 44 1_555 hydrog WATSON-CRICK B C 32 B N4 C 32 1_555 B G 44 B O6 G 44 1_555 hydrog WATSON-CRICK B C 32 B O2 C 32 1_555 B G 44 B N2 G 44 1_555 hydrog WATSON-CRICK B G 33 B N1 G 33 1_555 B C 43 B N3 C 43 1_555 hydrog WATSON-CRICK B G 33 B N2 G 33 1_555 B C 43 B O2 C 43 1_555 hydrog WATSON-CRICK B G 33 B O6 G 33 1_555 B C 43 B N4 C 43 1_555 hydrog TYPE_28_PAIR B U 34 B N3 U 34 1_555 B G 42 B O6 G 42 1_555 hydrog TYPE_28_PAIR B U 34 B O2 U 34 1_555 B G 42 B N1 G 42 1_555 hydrog TYPE_28_PAIR B U 35 B N3 U 35 1_555 B G 41 B O6 G 41 1_555 hydrog TYPE_28_PAIR B U 35 B O2 U 35 1_555 B G 41 B N1 G 41 1_555 RNA RNA structure; tRNA-mimicking; X-ray crystallography, RNA 9G4Q PDB 1 1 9G4Q 1 52 9G4Q 1 52 9G4Q A 1 1 52 1 52 9G4Q 1 52 9G4Q B 1 1 52 19 P 21 21 21