1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0003-0186-1067 Freitas, C.D.P. 0000-0002-8813-6433 Oshiro, K.G.N. 0000-0001-6969-6307 Macedo, M.L.R. 0000-0001-6676-5362 Cardoso, M.H. 0000-0001-9546-0525 Franco, O.L. 0000-0001-9985-2980 Liao, L.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 S C N 63 N C N 64 N C N 65 N C N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N N N 81 S C N 82 N C N 83 N O N 84 N C N 85 N C N 86 N C N 87 N C N 88 N O N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N N N 103 S C N 104 N C N 105 N O N 106 N C N 107 N C N 108 N C N 109 N C N 110 N N N 111 N O N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N H N 129 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing To Be Published 0353 Solution NMR structure of a computacionally designed mastoparan-like peptide, mastoparan-R4 0000-0003-0186-1067 0000-0002-8813-6433 0000-0001-6969-6307 0000-0001-6676-5362 0000-0001-9546-0525 0000-0001-9985-2980 10.2210/pdb8eru/pdb pdb_00008eru 10.13018/BMR31047 1641.163 Mastoparan-R4 peptide 1 syn polymer no yes INLKKLAARIKKKI(NH2) INLKKLAARIKKKIX B polypeptide(L) n n n n n n n n n n n n n n n database_2 pdbx_entry_details pdbx_modification_feature repository Initial release Database references Structure summary 1 0 2023-10-18 1 1 2024-11-20 _database_2.pdbx_DOI _pdbx_entry_details.has_protein_modification Brazil Brazilian National Council for Scientific and Technological Development (CNPq) carlosdaniel@discente.ufg.br 0000-0003-0186-1067 Carlos Daniel Freitas P. principal investigator/group leader Solution NMR structure of a computacionally designed mastoparan-like peptide, mastoparan-R4 N RCSB Y RCSB 2022-10-12 REL REL REL REL NH2 NH2 SUBJECT OF INVESTIGATION 7452 Korean yellow-jacket wasp Vespula lewisii sample 1 15 Y Y The Mastoparan-R4 peptide is an analog derived from the Mastoparan-L by the Joker algorithm. The primary sequence of the parental peptide was used as template for rational design, using the amino acid residues for modification of charge and hydrophobicity. B NH2 15 Terminal amidation A NH2 15 B ILE 14 ILE A ILE 14 1_555 NH2 3 1_555 None structures with the lowest energy 200 10 isotropic 1 2D 1H-1H TOCSY isotropic 1 2D 1H-1H NOESY isotropic 1 2D 1H-13C HSQC 1.5 mM natural abundance 75 mg/L [U-98% 2H] 0.05 % [U-98% 2H] acid Not defined Mastoparan_R4 3.98 pH 1 atm 298 K simulated annealing 1 lowest energy 1.5 mM Mastoparan-R4 peptide, 75 mg/L [U-98% 2H] SDS-d25, 0.05 % [U-98% 2H] DSS-d6, 90% H2O/10% D2O Mastoparan-R4 90% H2O/10% D2O solution CCPN chemical shift assignment CcpNmr Analysis 2.5.2 Linge, O'Donoghue and Nilges structure calculation ARIA 2.3.2 Bruker Biospin processing TopSpin CCPN peak picking CcpNmr Analysis Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS 500 Bruker AVANCE III ILE 1 n 1 ILE 1 B ASN 2 n 2 ASN 2 B LEU 3 n 3 LEU 3 B LYS 4 n 4 LYS 4 B LYS 5 n 5 LYS 5 B LEU 6 n 6 LEU 6 B ALA 7 n 7 ALA 7 B ALA 8 n 8 ALA 8 B ARG 9 n 9 ARG 9 B ILE 10 n 10 ILE 10 B LYS 11 n 11 LYS 11 B LYS 12 n 12 LYS 12 B LYS 13 n 13 LYS 13 B ILE 14 n 14 ILE 14 B NH2 15 n 15 NH2 15 B author_defined_assembly 1 monomeric NMR Distance Restraints 120 1 1730 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 N Solution NMR structure of a computationally designed mastoparan-like peptide, mastoparan-R4 1 N N B ASN 2 A ASN 2 HELX_P B ILE 14 A ILE 14 1 AA1 13 covale 1.325 both B ILE 14 A C ILE 14 1_555 B NH2 15 A N NH2 15 1_555 ANTIMICROBIAL PROTEIN Antimicrobial Peptide, AMPs, ANTIMICROBIAL PROTEIN MAST_VESLE UNP 1 1 P01514 INLKALAALAKKI 1 13 8ERU 1 14 P01514 B 1 1 14 1 ALA engineered mutation LYS 5 8ERU B P01514 UNP 5 5 1 insertion ARG 9 8ERU B P01514 UNP 9 1 LEU engineered mutation ILE 10 8ERU B P01514 UNP 9 10 1 ALA engineered mutation LYS 11 8ERU B P01514 UNP 10 11 1 amidation NH2 15 8ERU B P01514 UNP 15