0.016095 0.000000 0.000000 0.000000 0.016095 0.000000 0.000000 0.000000 0.013448 0.00000 0.00000 0.00000 3.54356 2.42580 25.62398 1.50364 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0.51345 0.48472 24.73122 6.32584 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.01032 2.96436 19.97189 1.75589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.49882 3.47563 15.80542 1.70748 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.51135 5.44231 1.42069 35.72801 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.55732 6.39887 1.23737 29.19336 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0000-0001-9719-3440 Padua, R.A.P. 0000-0003-2394-3047 Glaser, A. 0000-0003-3961-8935 Ojoawo, A. 0000-0002-7631-8328 Kern, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 62.130 62.130 74.360 287038.856 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C9 H12 N O6 P 261.168 n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N O N 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C N 302 N O N 303 N P N 304 N O N 305 N O N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C N 324 N O N 325 N O N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 R C N 338 N O N 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N N Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C N 388 N O N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C N 406 N C N 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N doub Y 290 N sing Y 291 N sing N 292 N sing Y 293 N doub N 294 N sing Y 295 N doub N 296 N sing Y 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing Y 346 N doub Y 347 N sing Y 348 N sing N 349 N sing Y 350 N doub Y 351 N sing Y 352 N sing N 353 N sing Y 354 N sing Y 355 N doub N 356 N sing Y 357 N doub N 358 N sing Y 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing To Be Published 0353 Crystal structure of N-SH2 domain of SHP2 with T42A mutation bound to GAB1 tyrosine phosphorylated peptide (624-633) QVEpYLDLDLD Acta Crystallogr D Struct Biol 0353 10.1107/S2059798319011471 31588918 Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix 2019 0000-0001-9719-3440 0000-0003-2394-3047 0000-0003-3961-8935 0000-0002-7631-8328 0000-0003-3921-3209 0000-0002-5052-991X 0000-0003-2492-979X 0000-0002-4871-2096 0000-0001-6690-8458 0000-0001-8857-9464 0000-0003-3107-2202 0000-0001-9633-6067 0000-0001-8273-0047 0000-0002-3311-2944 0000-0002-8346-9247 0000-0002-0623-3214 0000-0001-6384-0320 0000-0001-9333-8219 10.2210/pdb9eik/pdb pdb_00009eik 100 1 N PIXEL 2022-07-23 DECTRIS EIGER X 16M SINGLE WAVELENGTH M x-ray 1 0.97946 1.0 BL12-1 SSRL 0.97946 SYNCHROTRON SSRL BEAMLINE BL12-1 12177.623 Isoform 1 of Tyrosine-protein phosphatase non-receptor type 11 3.1.3.48 N-terminal SH2 domain T42A 1 man polymer 1302.278 Phosphorylated peptide from GRB2-associated-binding protein 1 residues 624-633 (Uniprot Isoform 1 numbering) 1 syn polymer 18.015 water 111 nat water Protein-tyrosine phosphatase 1D,PTP-1D,Protein-tyrosine phosphatase 2C,PTP-2C,SH-PTP2,SHP-2,Shp2,SH-PTP3 GRB2-associated binder 1,Growth factor receptor bound protein 2-associated protein 1 no no GSGMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFALSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAEL VQYYMEHHGQLKEKNGDVIELKYPLNCAD GSGMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFALSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAEL VQYYMEHHGQLKEKNGDVIELKYPLNCAD A polypeptide(L) no yes QVE(PTR)LDLDLD QVEYLDLDLD B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 1 109 PTPN11, PTP2C, SHPTP2 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) Biological sequence 1 2.66 53.79 VAPOR DIFFUSION, SITTING DROP 500 nL 10 mg/mL SHP2 N-SH2 with GAB1 peptide QVEpYLDLDLD (1:1.05 molar ratio) with 500 nL 0.2 M potassium sodium tartrate tetrahydrate, 0.1 M sodium citrate tribasic dihydrate pH 5.6, and 2.0 M Ammonium sulfate 291 repository Initial release 1 0 2026-01-07 United States Howard Hughes Medical Institute (HHMI) dkern@scripps.edu 0000-0002-7631-8328 Ricardo Augusto Pereira de Padua principal investigator/group leader N RCSB Y RCSB 2024-11-26 REL REL PTR PTR SUBJECT OF INVESTIGATION HOH water 9606 human Homo sapiens sample 1 10 Y Y 9EHD PDB experimental model B PTR 5 Named protein modification B PTR 4 TYR PTR 1 1_555 Phosphorylation HOH 55 3 HOH HOH 201 A HOH 50 3 HOH HOH 202 A HOH 27 3 HOH HOH 203 A HOH 77 3 HOH HOH 204 A HOH 63 3 HOH HOH 205 A HOH 123 3 HOH HOH 206 A HOH 20 3 HOH HOH 207 A HOH 29 3 HOH HOH 208 A HOH 35 3 HOH HOH 209 A HOH 30 3 HOH HOH 210 A HOH 3 3 HOH HOH 211 A HOH 9 3 HOH HOH 212 A HOH 74 3 HOH HOH 213 A HOH 4 3 HOH HOH 214 A HOH 52 3 HOH HOH 215 A HOH 58 3 HOH HOH 216 A HOH 53 3 HOH HOH 217 A HOH 40 3 HOH HOH 218 A HOH 42 3 HOH HOH 219 A HOH 33 3 HOH HOH 220 A HOH 21 3 HOH HOH 221 A HOH 57 3 HOH HOH 222 A HOH 24 3 HOH HOH 223 A HOH 62 3 HOH HOH 224 A HOH 87 3 HOH HOH 225 A HOH 38 3 HOH HOH 226 A HOH 89 3 HOH HOH 227 A HOH 17 3 HOH HOH 228 A HOH 68 3 HOH HOH 229 A HOH 88 3 HOH HOH 230 A HOH 97 3 HOH HOH 231 A HOH 101 3 HOH HOH 232 A HOH 90 3 HOH HOH 233 A HOH 117 3 HOH HOH 234 A HOH 60 3 HOH HOH 235 A HOH 16 3 HOH HOH 236 A HOH 6 3 HOH HOH 237 A HOH 41 3 HOH HOH 238 A HOH 7 3 HOH HOH 239 A HOH 120 3 HOH HOH 240 A HOH 82 3 HOH HOH 241 A HOH 25 3 HOH HOH 242 A HOH 11 3 HOH HOH 243 A HOH 121 3 HOH HOH 244 A HOH 2 3 HOH HOH 245 A HOH 5 3 HOH HOH 246 A HOH 36 3 HOH HOH 247 A HOH 107 3 HOH HOH 248 A HOH 28 3 HOH HOH 249 A HOH 54 3 HOH HOH 250 A HOH 1 3 HOH HOH 251 A HOH 8 3 HOH HOH 252 A HOH 15 3 HOH HOH 253 A HOH 83 3 HOH HOH 254 A HOH 31 3 HOH HOH 255 A HOH 37 3 HOH HOH 256 A HOH 70 3 HOH HOH 257 A HOH 45 3 HOH HOH 258 A HOH 26 3 HOH HOH 259 A HOH 91 3 HOH HOH 260 A HOH 75 3 HOH HOH 261 A HOH 104 3 HOH HOH 262 A HOH 12 3 HOH HOH 263 A HOH 76 3 HOH HOH 264 A HOH 65 3 HOH HOH 265 A HOH 92 3 HOH HOH 266 A HOH 84 3 HOH HOH 267 A HOH 32 3 HOH HOH 268 A HOH 80 3 HOH HOH 269 A HOH 46 3 HOH HOH 270 A HOH 116 3 HOH HOH 271 A HOH 71 3 HOH HOH 272 A HOH 13 3 HOH HOH 273 A HOH 66 3 HOH HOH 274 A HOH 86 3 HOH HOH 275 A HOH 69 3 HOH HOH 276 A HOH 99 3 HOH HOH 277 A HOH 98 3 HOH HOH 278 A HOH 103 3 HOH HOH 279 A HOH 18 3 HOH HOH 280 A HOH 122 3 HOH HOH 281 A HOH 85 3 HOH HOH 282 A HOH 105 3 HOH HOH 283 A HOH 78 3 HOH HOH 284 A HOH 114 3 HOH HOH 285 A HOH 93 3 HOH HOH 286 A HOH 48 3 HOH HOH 287 A HOH 111 3 HOH HOH 288 A HOH 61 3 HOH HOH 289 A HOH 119 3 HOH HOH 290 A HOH 100 3 HOH HOH 291 A HOH 94 3 HOH HOH 292 A HOH 95 3 HOH HOH 293 A HOH 102 3 HOH HOH 294 A HOH 43 3 HOH HOH 295 A HOH 79 3 HOH HOH 296 A HOH 49 3 HOH HOH 297 A HOH 109 3 HOH HOH 298 A HOH 47 3 HOH HOH 299 A HOH 64 3 HOH HOH 101 B HOH 44 3 HOH HOH 102 B HOH 39 3 HOH HOH 103 B HOH 23 3 HOH HOH 104 B HOH 19 3 HOH HOH 105 B HOH 81 3 HOH HOH 106 B HOH 67 3 HOH HOH 107 B HOH 96 3 HOH HOH 108 B HOH 56 3 HOH HOH 109 B HOH 112 3 HOH HOH 110 B HOH 73 3 HOH HOH 111 B HOH 72 3 HOH HOH 112 B n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A n 5 2 A n 6 3 A n 7 4 A ARG 5 n 8 ARG 5 A TRP 6 n 9 TRP 6 A PHE 7 n 10 PHE 7 A HIS 8 n 11 HIS 8 A PRO 9 n 12 PRO 9 A ASN 10 n 13 ASN 10 A ILE 11 n 14 ILE 11 A THR 12 n 15 THR 12 A GLY 13 n 16 GLY 13 A VAL 14 n 17 VAL 14 A GLU 15 n 18 GLU 15 A ALA 16 n 19 ALA 16 A GLU 17 n 20 GLU 17 A ASN 18 n 21 ASN 18 A LEU 19 n 22 LEU 19 A LEU 20 n 23 LEU 20 A LEU 21 n 24 LEU 21 A THR 22 n 25 THR 22 A ARG 23 n 26 ARG 23 A GLY 24 n 27 GLY 24 A VAL 25 n 28 VAL 25 A ASP 26 n 29 ASP 26 A GLY 27 n 30 GLY 27 A SER 28 n 31 SER 28 A PHE 29 n 32 PHE 29 A LEU 30 n 33 LEU 30 A ALA 31 n 34 ALA 31 A ARG 32 n 35 ARG 32 A PRO 33 n 36 PRO 33 A SER 34 n 37 SER 34 A LYS 35 n 38 LYS 35 A SER 36 n 39 SER 36 A ASN 37 n 40 ASN 37 A PRO 38 n 41 PRO 38 A GLY 39 n 42 GLY 39 A ASP 40 n 43 ASP 40 A PHE 41 n 44 PHE 41 A ALA 42 n 45 ALA 42 A LEU 43 n 46 LEU 43 A SER 44 n 47 SER 44 A VAL 45 n 48 VAL 45 A ARG 46 n 49 ARG 46 A ARG 47 n 50 ARG 47 A ASN 48 n 51 ASN 48 A GLY 49 n 52 GLY 49 A ALA 50 n 53 ALA 50 A VAL 51 n 54 VAL 51 A THR 52 n 55 THR 52 A HIS 53 n 56 HIS 53 A ILE 54 n 57 ILE 54 A LYS 55 n 58 LYS 55 A ILE 56 n 59 ILE 56 A GLN 57 n 60 GLN 57 A ASN 58 n 61 ASN 58 A THR 59 n 62 THR 59 A GLY 60 n 63 GLY 60 A ASP 61 n 64 ASP 61 A TYR 62 n 65 TYR 62 A TYR 63 n 66 TYR 63 A ASP 64 n 67 ASP 64 A LEU 65 n 68 LEU 65 A TYR 66 n 69 TYR 66 A GLY 67 n 70 GLY 67 A GLY 68 n 71 GLY 68 A GLU 69 n 72 GLU 69 A LYS 70 n 73 LYS 70 A PHE 71 n 74 PHE 71 A ALA 72 n 75 ALA 72 A THR 73 n 76 THR 73 A LEU 74 n 77 LEU 74 A ALA 75 n 78 ALA 75 A GLU 76 n 79 GLU 76 A LEU 77 n 80 LEU 77 A VAL 78 n 81 VAL 78 A GLN 79 n 82 GLN 79 A TYR 80 n 83 TYR 80 A TYR 81 n 84 TYR 81 A MET 82 n 85 MET 82 A GLU 83 n 86 GLU 83 A HIS 84 n 87 HIS 84 A HIS 85 n 88 HIS 85 A GLY 86 n 89 GLY 86 A GLN 87 n 90 GLN 87 A LEU 88 n 91 LEU 88 A LYS 89 n 92 LYS 89 A GLU 90 n 93 GLU 90 A LYS 91 n 94 LYS 91 A ASN 92 n 95 ASN 92 A GLY 93 n 96 GLY 93 A ASP 94 n 97 ASP 94 A VAL 95 n 98 VAL 95 A ILE 96 n 99 ILE 96 A GLU 97 n 100 GLU 97 A LEU 98 n 101 LEU 98 A LYS 99 n 102 LYS 99 A TYR 100 n 103 TYR 100 A PRO 101 n 104 PRO 101 A LEU 102 n 105 LEU 102 A ASN 103 n 106 ASN 103 A CYS 104 n 107 CYS 104 A n 108 105 A n 109 106 A GLN 2 n 1 GLN 2 B VAL 3 n 2 VAL 3 B GLU 4 n 3 GLU 4 B PTR 5 n 4 PTR 5 B LEU 6 n 5 LEU 6 B ASP 7 n 6 ASP 7 B LEU 8 n 7 LEU 8 B ASP 9 n 8 ASP 9 B LEU 10 n 9 LEU 10 B ASP 11 n 10 ASP 11 B 6.64182984358 3.7737279942 0.79506057599 7.9592845742 4.15427412517 6.90657021839 -0.418379165681 -0.620161200982 0.364226288031 -0.243672133708 0.44237712066 -0.556594966412 -0.423692374757 0.809621089274 0.0132141010542 0.235210964256 0.0770084080751 -0.0155589342566 0.30562721467 -0.0746744274123 0.260246053167 refined -4.44678950635 25.6292438753 -5.20226932926 X-RAY DIFFRACTION 7.17775927482 -4.55305979109 1.78242454407 3.41950489833 -0.527279843466 5.55564802314 -0.0140849718162 -0.287548429345 0.404658635945 0.260464537136 0.170706363437 -0.585447266573 0.621542841005 0.802050403842 -0.133011207519 0.319544583438 0.097328921809 -0.0170302212736 0.263598832719 -0.057342522944 0.175149379974 refined -9.16381477526 29.8695532945 4.81013213203 X-RAY DIFFRACTION 1.69579484753 -0.599498764945 0.287499950656 3.50686722552 0.31582047519 0.767484965487 -0.257330453888 -0.216739288548 -0.260084352086 0.492046890686 0.24714513302 0.0123872234725 0.47846657426 0.283108894685 0.000934349435785 0.336848204651 0.083067566576 0.0219066277697 0.21266914229 -0.0071647375988 0.198783062728 refined -10.9627696204 21.6432148283 -0.930391809426 X-RAY DIFFRACTION 0.0117119350549 0.139888464083 0.237316935876 1.39980349992 2.4140307562 4.16827531526 -0.294581843649 -0.172668787768 -0.219607945327 0.699217723138 0.143280937023 0.603118660997 0.162283571848 -0.259284332239 0.378421569441 0.452134254969 0.11313358277 0.167278939417 0.225388050438 0.0332184562612 0.273203987649 refined -15.8364958374 20.8353087222 2.48421399507 X-RAY DIFFRACTION 1.60519554305 -1.06908569658 -1.01325055586 3.00434729803 0.922138420831 3.11758561198 -0.216277030397 0.128215666765 -0.388765568839 0.290662567192 0.0143390259309 0.292526586751 0.15804160311 -0.198599129398 0.163539101443 0.193006173483 -0.0142885296827 0.0797904017771 0.1870307436 -0.00811930739002 0.257347780855 refined -13.641862602 14.3581144067 -12.2544682496 X-RAY DIFFRACTION 4.73768406739 1.7462651112 1.31353730457 7.83533677264 -4.55006421329 3.91824156335 0.107156759762 0.274985643198 0.264529857597 0.684982982711 0.14399058387 0.35118533755 -0.41504595011 -1.41724126264 -0.299736005232 0.34675510471 0.0545329977271 0.134946278645 0.454878403776 -0.014252426496 0.633787857313 refined -24.377997089 19.9950327772 -9.29143517434 X-RAY DIFFRACTION 0.447367877143 1.18376683746 0.0958587252868 3.29021163081 0.553479644453 0.598877218594 0.0595925677747 -0.121290911025 0.0111456718786 0.685119417303 -0.0074429677838 0.533710296909 0.113145334297 -0.251774310631 -0.390018571253 0.719442856861 0.0180456465688 0.406028337954 0.45052520646 0.230820438508 1.36258259154 refined -26.1770838499 14.303887765 1.71889201098 X-RAY DIFFRACTION 8.08485053233 4.9780654448 -3.66489107563 9.19628365291 -6.50012125528 8.33062497011 -0.222968050768 0.184713865583 -0.380000939869 0.810635897722 0.148069773232 1.30612286218 -0.0483202458523 -1.02034157536 0.169185271409 0.417737403826 0.0278736609696 0.157558005359 0.321461371837 -0.0643815730607 0.580739568382 refined -23.8212504144 22.1450835027 -2.33253455476 X-RAY DIFFRACTION 3.65303825297 -1.49607698115 2.31358707115 6.4167233019 1.53438363991 3.15649366132 0.101274102561 0.0808492380987 1.05280562812 0.0397280139788 0.13281418996 -0.655564166974 -0.262863301655 0.345665900588 -0.242089944126 0.21750150538 -0.0164445210796 0.0389593528374 0.198261313025 -0.0330887841522 0.283110878038 refined -13.3742289231 31.3875148324 -5.91316036718 X-RAY DIFFRACTION 3.07081966011 -0.694459620792 -0.697857251304 2.57731692524 0.0403884108881 5.6855380255 -0.221107661777 -0.330375710501 -0.79771670918 1.2301708597 0.322997521294 0.595864553665 0.867534693772 -0.654752457435 -0.347331657864 0.682474304894 0.0458375414585 0.226339414999 0.333395794421 0.0638405835556 0.44310074019 refined -16.6166018066 13.166037513 2.2057448189 X-RAY DIFFRACTION A 5 A 1 A 12 A 8 X-RAY DIFFRACTION 1 chain 'A' and (resid 5 through 12 ) A 13 A 9 A 23 A 19 X-RAY DIFFRACTION 2 chain 'A' and (resid 13 through 23 ) A 24 A 20 A 47 A 43 X-RAY DIFFRACTION 3 chain 'A' and (resid 24 through 47 ) A 48 A 44 A 56 A 52 X-RAY DIFFRACTION 4 chain 'A' and (resid 48 through 56 ) A 57 A 53 A 83 A 79 X-RAY DIFFRACTION 5 chain 'A' and (resid 57 through 83 ) A 84 A 80 A 88 A 84 X-RAY DIFFRACTION 6 chain 'A' and (resid 84 through 88 ) A 89 A 85 A 93 A 89 X-RAY DIFFRACTION 7 chain 'A' and (resid 89 through 93 ) A 94 A 90 A 98 A 94 X-RAY DIFFRACTION 8 chain 'A' and (resid 94 through 98 ) A 99 A 95 A 104 A 100 X-RAY DIFFRACTION 9 chain 'A' and (resid 99 through 104 ) B 2 B 1 B 11 B 10 X-RAY DIFFRACTION 10 chain 'B' and (resid 2 through 11 ) author_and_software_defined_assembly PISA 2 dimeric gel filtration 1430 -17 6050 B PTR 5 modified residue B PTR 4 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASP 64 A O ASP 67 A N GLN 57 A N GLN 60 A O ILE 56 A O ILE 59 A N PHE 41 A N PHE 44 A O ARG 46 A O ARG 49 A N SER 28 A N SER 31 A N PHE 29 A N PHE 32 A O TYR 100 A O TYR 103 1 A GLU 76 A GLU 79 1 A HOH 206 C HOH 1 A HOH 229 C HOH 1 A HOH 245 C HOH 1 A HOH 263 C HOH 1 A HOH 278 C HOH 1 A GLY -2 A GLY 1 1 Y 1 A SER -1 A SER 2 1 Y 1 A GLY 0 A GLY 3 1 Y 1 A MET 1 A MET 4 1 Y 1 A THR 2 A THR 5 1 Y 1 A SER 3 A SER 6 1 Y 1 A ARG 4 A ARG 7 1 Y 1 A ALA 105 A ALA 108 1 Y 1 A ASP 106 A ASP 109 1 Y 1 6.07 0.90 118.30 124.37 A A A CB CG OD1 ASP ASP ASP 40 40 40 N 34.64 0.2251 0.2075 0.2084 1.25 37.82 2000 38860 40860 4.89 99.89 0.1876 1 FREE R-VALUE 1.33 MOLECULAR REPLACEMENT 24.9586 0.9000 1.1000 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 1.25 37.82 111 999 0 0 888 0.0187 917 1.6044 1244 0.1166 131 0.0126 164 14.8050 335 0.3578 0.3442 1.28 139 2708 99.58 0.3327 0.3094 1.32 140 2712 99.79 0.3378 0.3302 1.35 141 2749 99.76 0.3981 0.3338 1.40 139 2698 99.89 0.3400 0.2828 1.45 142 2758 99.86 0.2820 0.2422 1.51 140 2732 99.86 0.2314 0.2153 1.57 143 2759 99.97 0.2322 0.2107 1.66 141 2751 99.93 0.2399 0.2210 1.76 143 2771 99.90 0.2187 0.1959 1.90 142 2771 99.93 0.2058 0.1900 2.09 144 2783 99.97 0.2075 0.1896 2.39 145 2821 100.00 0.1990 0.2091 3.01 147 2840 100.00 0.2243 0.1972 37.82 154 3007 100.00 21.33 1.25 37.82 9EIK 40860 1 1 7.1 15 99.89 1.25 1.28 2847 0.3 1 99.58 refinement PHENIX 1.21.2_5419 data reduction XDS data scaling Aimless phasing PHASER model building Coot 96 tetragonal P 43 21 2 P 4nw 2abw x,y,z -y+1/2,x+1/2,z+3/4 y+1/2,-x+1/2,z+1/4 x+1/2,-y+1/2,-z+1/4 -x+1/2,y+1/2,-z+3/4 -x,-y,z+1/2 y,x,-z -y,-x,-z+1/2 N Crystal structure of N-SH2 domain of SHP2 with T42A mutation bound to GAB1 tyrosine phosphorylated peptide (624-633) QVEpYLDLDLD 1 N N 2 N N 3 N N 3 N N A THR 12 A THR 15 HELX_P A GLY 24 A GLY 27 1 AA1 13 A THR 73 A THR 76 HELX_P A HIS 84 A HIS 87 1 AA2 12 covale 1.326 both B GLU 4 B C GLU 3 1_555 B PTR 5 B N PTR 4 1_555 covale 1.325 both B PTR 5 B C PTR 4 1_555 B LEU 6 B N LEU 5 1_555 PROTEIN BINDING SHP2, phosphatase, SH2, allostery, phosphotyrosine, activation, GAB1, PROTEIN BINDING PTN11_HUMAN UNP 1 1 Q06124 Q06124-2 MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQY YMEHHGQLKEKNGDVIELKYPLNCAD GAB1_HUMAN UNP 2 624 Q13480 QVEYLDLDLD 1 106 9EIK 1 106 Q06124 A 1 4 109 624 633 9EIK 2 11 Q13480 B 2 1 10 1 expression tag GLY -2 9EIK A Q06124 UNP 1 1 expression tag SER -1 9EIK A Q06124 UNP 2 1 expression tag GLY 0 9EIK A Q06124 UNP 3 1 THR engineered mutation ALA 42 9EIK A Q06124 UNP 42 45 5 anti-parallel anti-parallel anti-parallel parallel A TYR 63 A TYR 66 A ASP 64 A ASP 67 A ALA 50 A ALA 53 A ASN 58 A ASN 61 A PHE 41 A PHE 44 A ARG 47 A ARG 50 A SER 28 A SER 31 A PRO 33 A PRO 36 A TYR 100 A TYR 103 A PRO 101 A PRO 104 96 P 43 21 2 P 4nw 2abw