1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 0000-0001-7822-0271 Fu, W.Q. 0000-0002-8713-3345 Jing, H.T. 0000-0002-0710-2689 Zhang, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C Y 49 N N Y 50 N C Y 51 N N Y 52 N C N 53 N C N 54 N O N 55 N N N 56 N C N 57 N N N 58 N N Y 59 N C N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C N 86 N N N 87 N C N 88 N O N 89 N N N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing Y 62 N sing Y 63 N sing Y 64 N doub N 65 N sing Y 66 N sing N 67 N sing Y 68 N doub N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing UK Nucleic Acids Res. NARHAD 0389 1362-4962 49 10717 10734 10.1093/nar/gkab755 34500466 Two coexisting pseudo-mirror heteromolecular telomeric G-quadruplexes in opposite loop progressions differentially recognized by a low equivalent of Thioflavin T. 2021 10.2210/pdb7do1/pdb pdb_00007do1 10.13018/BMR50625 4761.080 DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3') 1 syn polymer 1864.252 DNA (5'-D(*TP*TP*AP*GP*GP*G)-3') 1 syn polymer no no (DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG) GGGTTAGGGTTAGGG A polydeoxyribonucleotide no no (DT)(DT)(DA)(DG)(DG)(DG) TTAGGG B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n -21.655 A 12 B 23 16.257 A_DA12:DA23_B 1 -15.799 7.082 2.243 -2.704 8.654 3 6 A 13 B 24 95.993 A_DG13:DG24_B 2 -1.492 -0.976 -0.078 -3.825 0.561 3 6 A 8 A 2 87.839 A_DG8:DG2_A 3 -4.222 -2.051 -0.017 -3.623 -0.209 -168.475 A A 12 13 -50.300 B B 23 24 -4.481 94.435 -1.492 -2.204 AA_DA12DG13:DG24DA23_BB 1 -139.506 -74.307 -5.331 2.369 1.113 0.385 172.141 A A 13 8 -40.878 B A 24 2 -2.806 -79.513 -3.743 3.146 AA_DG13DG8:DG2DG24_AB 2 -151.608 77.943 53.595 1.231 2.536 citation citation_author pdbx_database_status chem_comp_atom chem_comp_bond database_2 repository Initial release Database references Other Data collection Database references 1 0 2021-09-29 1 1 2022-02-16 1 2 2023-06-14 1 3 2024-05-15 _citation.journal_volume _citation.page_first _citation.page_last _citation_author.identifier_ORCID _citation_author.name _pdbx_database_status.status_code_nmr_data _database_2.pdbx_DOI China National Natural Science Foundation of China (NSFC) U1932157 China National Natural Science Foundation of China (NSFC) 21372223 China National Natural Science Foundation of China (NSFC) U1232145 N PDBJ Y PDBJ 2020-12-11 REL REL REL REL 9606 Human Homo sapiens sample 1 15 9606 Human Homo sapiens sample 1 6 structures with the lowest energy 200 10 isotropic 1 2D 1H-1H NOESY isotropic 1 2D 1H-1H NOESY isotropic 1 2D 1H-15N HSQC isotropic 1 2D 1H-13C HSQC 4 mM natural abundance 4.2 mM natural abundance 20 mM natural abundance 100 mM natural abundance 10 % v/v [U-99% 2H] 90 % v/v natural abundance 4 mM natural abundance 4.2 mM natural abundance 20 mM natural abundance 100 mM natural abundance 100 % v/v [U-99% 2H] 0.1 M condition_1 6.8 pH 1 atm 303 K simulated annealing 1 lowest energy 4 mM DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), 4.2 mM DNA (5'-D(*TP*TP*AP*GP*GP*G)-3'), 20 mM sodium phosphate, 100 mM sodium chloride, 10 % v/v [U-99% 2H] D2O, 90 % v/v H2O, 90% H2O/10% D2O sample_H2O 90% H2O/10% D2O solution 4 mM DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), 4.2 mM DNA (5'-D(*TP*TP*AP*GP*GP*G)-3'), 20 mM sodium phosphate, 100 mM sodium chloride, 100 % v/v [U-99% 2H] D2O, 100% D2O sample_D2O 100% D2O solution Bruker Biospin collection TopSpin 3.6.2 CCPN chemical shift assignment CcpNmr Analysis 2.4.2 Schwieters, Kuszewski, Tjandra and Clore geometry optimization X-PLOR NIH 3.0.3 Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 600 Bruker AVANCE DG 1 n 1 DG 1 A DG 2 n 2 DG 2 A DG 3 n 3 DG 3 A DT 4 n 4 DT 4 A DT 5 n 5 DT 5 A DA 6 n 6 DA 6 A DG 7 n 7 DG 7 A DG 8 n 8 DG 8 A DG 9 n 9 DG 9 A DT 10 n 10 DT 10 A DT 11 n 11 DT 11 A DA 12 n 12 DA 12 A DG 13 n 13 DG 13 A DG 14 n 14 DG 14 A DG 15 n 15 DG 15 A DT 21 n 1 DT 21 B DT 22 n 2 DT 22 B DA 23 n 3 DA 23 B DG 24 n 4 DG 24 B DG 25 n 5 DG 25 B DG 26 n 6 DG 26 B author_defined_assembly 2 dimeric 15N-filtered and 13C-filtered spectra; none 940 -1 4080 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 N Solution structure of a heteromolecular telomeric (3+1) G-quadruplex containing right loop progression 1 N N 2 N N hydrog TYPE_6_PAIR A DG 1 A N7 DG 1 1_555 A DG 9 A N2 DG 9 1_555 hydrog TYPE_6_PAIR A DG 1 A O6 DG 1 1_555 A DG 9 A N1 DG 9 1_555 hydrog TYPE_6_PAIR A DG 1 A N1 DG 1 1_555 B DG 24 B O6 DG 4 1_555 hydrog TYPE_6_PAIR A DG 1 A N2 DG 1 1_555 B DG 24 B N7 DG 4 1_555 hydrog TYPE_6_PAIR A DG 2 A N1 DG 2 1_555 A DG 8 A O6 DG 8 1_555 hydrog TYPE_6_PAIR A DG 2 A N2 DG 2 1_555 A DG 8 A N7 DG 8 1_555 hydrog TYPE_6_PAIR A DG 2 A N7 DG 2 1_555 B DG 25 B N2 DG 5 1_555 hydrog TYPE_6_PAIR A DG 2 A O6 DG 2 1_555 B DG 25 B N1 DG 5 1_555 hydrog TYPE_6_PAIR A DG 3 A N1 DG 3 1_555 A DG 7 A O6 DG 7 1_555 hydrog TYPE_6_PAIR A DG 3 A N2 DG 3 1_555 A DG 7 A N7 DG 7 1_555 hydrog TYPE_6_PAIR A DG 3 A N7 DG 3 1_555 B DG 26 B N2 DG 6 1_555 hydrog TYPE_6_PAIR A DG 3 A O6 DG 3 1_555 B DG 26 B N1 DG 6 1_555 hydrog TYPE_6_PAIR A DG 7 A N1 DG 7 1_555 A DG 15 A O6 DG 15 1_555 hydrog TYPE_6_PAIR A DG 7 A N2 DG 7 1_555 A DG 15 A N7 DG 15 1_555 hydrog TYPE_6_PAIR A DG 8 A N1 DG 8 1_555 A DG 14 A O6 DG 14 1_555 hydrog TYPE_6_PAIR A DG 8 A N2 DG 8 1_555 A DG 14 A N7 DG 14 1_555 hydrog TYPE_6_PAIR A DG 9 A N7 DG 9 1_555 A DG 13 A N2 DG 13 1_555 hydrog TYPE_6_PAIR A DG 9 A O6 DG 9 1_555 A DG 13 A N1 DG 13 1_555 hydrog DA-DA MISPAIR A DA 12 A N3 DA 12 1_555 B DA 23 B N6 DA 3 1_555 hydrog TYPE_6_PAIR A DG 13 A N7 DG 13 1_555 B DG 24 B N2 DG 4 1_555 hydrog TYPE_6_PAIR A DG 13 A O6 DG 13 1_555 B DG 24 B N1 DG 4 1_555 hydrog TYPE_6_PAIR A DG 14 A N1 DG 14 1_555 B DG 25 B O6 DG 5 1_555 hydrog TYPE_6_PAIR A DG 14 A N2 DG 14 1_555 B DG 25 B N7 DG 5 1_555 hydrog TYPE_6_PAIR A DG 15 A N1 DG 15 1_555 B DG 26 B O6 DG 6 1_555 hydrog TYPE_6_PAIR A DG 15 A N2 DG 15 1_555 B DG 26 B N7 DG 6 1_555 DNA hybrid G-quadruplex, human telomere, (3+1), DNA 7DO1 PDB 1 1 7DO1 7DO1 PDB 2 1 7DO1 1 15 7DO1 1 15 7DO1 A 1 1 15 21 26 7DO1 21 26 7DO1 B 2 1 6