0.005964 0.003443 0.000000 0.000000 0.006887 0.000000 0.000000 0.000000 0.012124 0.00000 0.00000 0.00000 5.96793 14.89577 0.0 1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 6.96715 11.43723 0.0 1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 7.96527 9.05267 0.0 1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 14.90797 11.91318 0.0 1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0009-0000-3495-8434 Koomullam, N. 0000-0001-7516-8666 Mao, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.000 90.000 120.000 167.670 167.670 82.484 2008219.010 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing GE Angew.Chem.Int.Ed.Engl. ACIEAY 0179 1521-3773 64 e18174 e18174 10.1002/anie.202518174 41165523 Crystallographic Study of DNA T-Junction via Crystal Engineering. 2025 0000-0001-7516-8666 10.2210/pdb9dgn/pdb pdb_00009dgn 100 1 N IMAGE PLATE 2016-08-18 RIGAKU RAXIS IV++ SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE RIGAKU R-AXIS IV 4562.988 DNA (5'-D(*CP*AP*GP*CP*AP*GP*CP*CP*TP*GP*AP*AP*TP*AP*C)-3') 1 syn polymer 1825.216 DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3') 1 syn polymer Bases from 29 to 32 (TTTT) are not modelled in the structure. 18173.582 DNA (59-MER) 1 syn polymer 2433.602 DNA (5'-D(*TP*GP*CP*GP*CP*TP*GP*T)-3') 1 syn polymer no no (DC)(DA)(DG)(DC)(DA)(DG)(DC)(DC)(DT)(DG)(DA)(DA)(DT)(DA)(DC) CAGCAGCCTGAATAC A polydeoxyribonucleotide no no (DG)(DG)(DC)(DT)(DG)(DC) GGCTGC B polydeoxyribonucleotide no no (DT)(DG)(DC)(DG)(DA)(DG)(DT)(DA)(DT)(DT)(DC)(DA)(DC)(DC)(DG)(DG)(DC)(DC)(DC)(DG) (DC)(DG)(DG)(DA)(DC)(DA)(DA)(DC)(DT)(DT)(DT)(DT)(DG)(DT)(DT)(DG)(DT)(DC)(DC)(DG) (DC)(DG)(DG)(DT)(DC)(DG)(DC)(DA)(DG)(DC)(DC)(DG)(DG)(DA)(DC)(DA)(DG)(DC)(DG) TGCGAGTATTCACCGGCCCGCGGACAACTTTTGTTGTCCGCGGTCGCAGCCGGACAGCG C polydeoxyribonucleotide no no (DT)(DG)(DC)(DG)(DC)(DT)(DG)(DT) TGCGCTGT E polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 8.27 85.12 VAPOR DIFFUSION, HANGING DROP DNA strands mixed with TAE/Mg2+ and 0.001 M Magnesium chloride hexahydrate, 0.005 M Tris hydrochloride, pH=7.5, 0.16 M Ammonium sulfate, 0.23 M sucrose and crystallized against (NH4)2SO4 298 24.080 1 A 4 B 13 -11.273 A_DC4:DG13_B 1 -13.150 -0.190 -1.528 0.369 -32.425 1 20 A 5 B 12 -14.690 A_DA5:DT12_B 2 -7.058 1.295 -0.917 0.062 -6.157 1 22 A 6 B 11 -8.645 A_DG6:DC11_B 3 3.467 0.616 0.454 -0.982 8.128 1 A 7 B 10 4.471 A_DC7:DG10_B 4 4.470 2.849 -0.836 -1.028 -27.562 1 A 8 B 9 -30.231 A_DC8:DG9_B 5 11.143 0.623 1.669 -0.896 -15.694 1 3 C 49 C 16 -18.058 C_DG49:DG16_C 6 -40.468 0.197 -1.615 1.107 7.192 1 C 51 C 15 -18.050 C_DC51:DG15_C 7 -29.839 1.702 0.600 -0.627 -36.684 1 19 C 52 C 14 -1.854 C_DG52:DC14_C 8 -15.944 -1.209 -2.185 -0.051 -22.363 1 19 C 53 C 13 -1.079 C_DG53:DC13_C 9 -30.217 -0.017 -0.192 -0.494 -17.944 1 20 C 54 E 8 12.802 C_DA54:DT8_E 10 3.565 1.077 0.026 -0.211 4.909 1 19 C 55 E 7 -4.906 C_DC55:DG7_E 11 6.785 0.585 0.591 -0.762 28.493 1 19 C 57 E 5 -4.795 C_DG57:DC5_E 12 -18.796 -0.064 1.108 -0.225 12.024 1 22 C 58 E 4 20.439 C_DC58:DG4_E 13 -21.954 1.000 0.746 0.046 11.658 1 C 59 E 3 1.764 C_DG59:DC3_E 14 -32.174 -2.829 2.153 -1.220 -15.716 1 19 C 18 C 43 -6.675 C_DC18:DG43_C 15 -5.247 -1.871 -0.308 0.081 -9.583 1 22 C 19 C 42 -19.334 C_DC19:DG42_C 16 0.785 -0.107 -0.032 -0.483 2.642 1 19 C 20 C 41 -12.424 C_DG20:DC41_C 17 -7.299 1.895 0.752 -0.182 32.150 1 C 21 C 40 8.325 C_DC21:DG40_C 18 -2.428 2.457 -0.924 -0.308 21.758 1 19 C 22 C 39 5.515 C_DG22:DC39_C 19 -15.049 1.091 0.970 -0.034 -22.614 1 19 C 23 C 38 6.118 C_DG23:DC38_C 20 -19.822 -0.909 0.664 0.011 -17.409 1 20 C 24 C 37 -3.156 C_DA24:DT37_C 21 0.895 -1.369 -0.053 -0.165 16.726 1 19 C 25 C 36 -0.925 C_DC25:DG36_C 22 -18.871 -0.960 1.044 -0.099 22.055 C 26 C 35 2.491 C_DA26:DT35_C 23 -6.232 0.742 0.548 0.781 -22.504 1 19 C 28 C 33 2.715 C_DC28:DG33_C 24 -8.781 -1.466 0.421 0.426 4.246 52.306 A A 4 5 14.578 B B 13 12 4.414 12.709 -0.523 -0.365 AA_DC4DA5:DT12DG13_BB 1 -6.635 7.611 50.437 -1.548 0.001 2.687 39.684 A A 5 6 -30.876 B B 12 11 2.630 -20.003 0.865 -1.077 AA_DA5DG6:DC11DT12_BB 2 -5.195 8.020 34.065 0.469 -1.808 3.557 53.346 A A 6 7 -26.683 B B 11 10 3.511 -23.156 0.957 -0.613 AA_DG6DC7:DG10DC11_BB 3 8.819 -10.162 47.620 1.011 -0.421 4.812 35.610 A A 7 8 5.370 B B 10 9 4.406 3.144 -2.180 -0.935 AA_DC7DC8:DG9DG10_BB 4 -17.593 30.052 30.927 -2.222 -0.316 4.651 59.626 C C 49 51 -10.647 C C 16 15 4.555 -10.540 -2.332 -0.744 CC_DG49DC51:DG15DG16_CC 5 -1.013 1.023 58.763 0.002 2.274 4.498 32.000 C C 51 52 3.602 C C 15 14 4.641 1.809 1.657 -0.589 CC_DC51DG52:DC14DG15_CC 6 21.927 -43.663 23.382 -1.600 3.450 2.338 52.443 C C 52 53 -9.431 C C 14 13 2.924 -8.123 0.176 2.064 CC_DG52DG53:DC13DC14_CC 7 -19.773 22.957 48.173 2.787 -1.297 2.195 22.398 C C 53 54 23.574 C E 13 8 2.790 8.869 -1.103 -1.297 CC_DG53DA54:DT8DC13_EC 8 -3.599 9.567 20.273 -5.978 1.768 2.605 32.524 C C 54 55 5.214 E E 8 7 2.768 2.913 -0.376 -1.305 CC_DA54DC55:DG7DT8_EE 9 2.678 -4.793 32.289 -2.750 1.057 5.599 72.990 C C 55 57 -19.575 E E 7 5 5.827 -22.965 2.254 0.570 CC_DC55DG57:DC5DG7_EE 10 6.316 -5.384 69.511 1.827 -1.524 3.706 50.002 C C 57 58 -9.658 E E 5 4 3.709 -8.124 1.049 0.172 CC_DG57DC58:DG4DC5_EE 11 3.926 -4.667 49.233 0.877 -0.915 1.941 29.908 C C 58 59 11.515 E E 4 3 2.345 5.653 -0.509 -1.670 CC_DC58DG59:DC3DG4_EE 12 -14.745 30.032 25.481 -4.069 -1.184 3.170 43.430 C C 18 19 -8.028 C C 43 42 3.057 -5.923 -1.144 -0.881 CC_DC18DC19:DG42DG43_CC 13 -0.980 1.328 43.033 -0.641 1.456 2.794 38.478 C C 19 20 -15.170 C C 42 41 2.855 -9.846 -0.067 -0.232 CC_DC19DG20:DC41DG42_CC 14 -6.656 10.256 36.663 0.731 -0.631 2.796 39.198 C C 20 21 -11.056 C C 41 40 2.542 -7.219 1.629 0.627 CC_DG20DC21:DG40DC41_CC 15 14.173 -21.706 35.943 1.673 -0.980 3.501 36.316 C C 21 22 7.545 C C 40 39 3.440 4.686 0.818 1.222 CC_DC21DG22:DC39DG40_CC 16 -2.594 4.176 35.932 1.262 -1.699 3.957 36.965 C C 22 23 21.499 C C 39 38 4.343 13.312 -0.421 -0.373 CC_DG22DG23:DC38DC39_CC 17 -4.408 7.120 34.288 -2.957 -0.120 3.283 40.736 C C 23 24 -2.744 C C 38 37 3.299 -1.910 -1.808 0.847 CC_DG23DA24:DT37DC38_CC 18 -0.595 0.855 40.689 1.429 2.531 2.559 34.860 C C 24 25 -22.587 C C 37 36 2.841 -13.187 -0.449 0.304 CC_DA24DC25:DG36DT37_CC 19 -3.740 6.406 32.129 2.233 0.260 4.188 44.097 C C 25 26 -1.557 C C 36 35 4.199 -1.169 -0.071 0.397 CC_DC25DA26:DT35DG36_CC 20 -0.339 0.451 44.081 0.669 0.054 citation repository Initial release Database references 1 0 2025-11-12 1 1 2025-12-24 _citation.journal_volume United States National Science Foundation (NSF, United States) CCF 2107393 mao@purdue.edu 0000-0001-7516-8666 Chengde Mao principal investigator/group leader N RCSB Y RCSB 2024-09-02 REL REL 32630 synthetic construct sample 1 15 32630 synthetic construct sample 1 6 32630 synthetic construct sample 1 59 32630 synthetic construct sample 1 8 N B DNA duplex with 31 base pairs Other in silico model DC 1 n 1 DC 1 A DA 2 n 2 DA 2 A DG 3 n 3 DG 3 A DC 4 n 4 DC 4 A DA 5 n 5 DA 5 A DG 6 n 6 DG 6 A DC 7 n 7 DC 7 A DC 8 n 8 DC 8 A DT 9 n 9 DT 9 A DG 10 n 10 DG 10 A DA 11 n 11 DA 11 A DA 12 n 12 DA 12 A DT 13 n 13 DT 13 A DA 14 n 14 DA 14 A DC 15 n 15 DC 15 A DG 9 n 1 DG 9 B DG 10 n 2 DG 10 B DC 11 n 3 DC 11 B DT 12 n 4 DT 12 B DG 13 n 5 DG 13 B DC 14 n 6 DC 14 B DT 1 n 1 DT 1 C DG 2 n 2 DG 2 C DC 3 n 3 DC 3 C DG 4 n 4 DG 4 C DA 5 n 5 DA 5 C DG 6 n 6 DG 6 C DT 7 n 7 DT 7 C DA 8 n 8 DA 8 C DT 9 n 9 DT 9 C DT 10 n 10 DT 10 C DC 11 n 11 DC 11 C DA 12 n 12 DA 12 C DC 13 n 13 DC 13 C DC 14 n 14 DC 14 C DG 15 n 15 DG 15 C DG 16 n 16 DG 16 C DC 17 n 17 DC 17 C DC 18 n 18 DC 18 C DC 19 n 19 DC 19 C DG 20 n 20 DG 20 C DC 21 n 21 DC 21 C DG 22 n 22 DG 22 C DG 23 n 23 DG 23 C DA 24 n 24 DA 24 C DC 25 n 25 DC 25 C DA 26 n 26 DA 26 C DA 27 n 27 DA 27 C DC 28 n 28 DC 28 C n 29 29 C n 30 30 C n 31 31 C n 32 32 C DG 33 n 33 DG 33 C DT 34 n 34 DT 34 C DT 35 n 35 DT 35 C DG 36 n 36 DG 36 C DT 37 n 37 DT 37 C DC 38 n 38 DC 38 C DC 39 n 39 DC 39 C DG 40 n 40 DG 40 C DC 41 n 41 DC 41 C DG 42 n 42 DG 42 C DG 43 n 43 DG 43 C DT 44 n 44 DT 44 C DC 45 n 45 DC 45 C DG 46 n 46 DG 46 C DC 47 n 47 DC 47 C DA 48 n 48 DA 48 C DG 49 n 49 DG 49 C DC 50 n 50 DC 50 C DC 51 n 51 DC 51 C DG 52 n 52 DG 52 C DG 53 n 53 DG 53 C DA 54 n 54 DA 54 C DC 55 n 55 DC 55 C DA 56 n 56 DA 56 C DG 57 n 57 DG 57 C DC 58 n 58 DC 58 C DG 59 n 59 DG 59 C DT 1 n 1 DT 1 E DG 2 n 2 DG 2 E DC 3 n 3 DC 3 E DG 4 n 4 DG 4 E DC 5 n 5 DC 5 E DT 6 n 6 DT 6 E DG 7 n 7 DG 7 E DT 8 n 8 DT 8 E author_defined_assembly 12 dodecameric native gel electrophoresis 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 C C7 DT 34 C C7 DT 34 1 Y 1 C C7 DT 35 C C7 DT 35 1 Y 1 C C7 DT 37 C C7 DT 37 1 Y 1 C DT 29 C DT 29 1 Y 1 C DT 30 C DT 30 1 Y 1 C DT 31 C DT 31 1 Y 1 C DT 32 C DT 32 1 Y 1 A B O6 N4 DG DC 6 11 1.82 1 A B N4 O6 DC DG 8 9 1.90 1 C C N4 O6 DC DG 19 42 2.00 1 C E O2 N2 DC DG 58 4 2.05 1 A B N1 N3 DG DC 6 11 2.15 1 2.30 0.30 108.30 110.60 A A A O4' C1' N1 DC DC DC 4 4 4 N 1 -2.42 0.40 104.50 102.08 A A A O4' C4' C3' DC DC DC 8 8 8 N 1 -2.64 0.40 104.50 101.86 A A A O4' C4' C3' DT DT DT 9 9 9 N 1 2.19 0.30 108.30 110.49 A A A O4' C1' N9 DA DA DA 11 11 11 N 1 -5.03 0.80 102.40 97.37 A A A C3' C2' C1' DT DT DT 13 13 13 N 1 2.08 0.30 108.30 110.38 A A A O4' C1' N1 DT DT DT 13 13 13 N 1 2.93 0.30 108.30 111.23 A A A O4' C1' N9 DA DA DA 14 14 14 N 1 3.65 0.30 108.30 111.95 B B B O4' C1' N9 DG DG DG 10 10 10 N 1 2.18 0.30 108.30 110.48 B B B O4' C1' N1 DC DC DC 14 14 14 N 1 -6.20 0.80 102.40 96.20 C C C C3' C2' C1' DG DG DG 2 2 2 N 1 1.88 0.30 108.30 110.18 C C C O4' C1' N1 DC DC DC 3 3 3 N 1 3.56 0.30 108.30 111.86 C C C O4' C1' N9 DG DG DG 6 6 6 N 1 2.21 0.30 108.30 110.51 C C C O4' C1' N1 DT DT DT 7 7 7 N 1 2.95 0.30 108.30 111.25 C C C O4' C1' N9 DA DA DA 8 8 8 N 1 2.39 0.30 108.30 110.69 C C C O4' C1' N1 DT DT DT 10 10 10 N 1 1.82 0.30 108.30 110.12 C C C O4' C1' N1 DC DC DC 17 17 17 N 1 3.21 0.30 108.30 111.51 C C C O4' C1' N1 DC DC DC 28 28 28 N 1 2.73 0.30 108.30 111.03 C C C O4' C1' N1 DT DT DT 35 35 35 N 1 2.07 0.30 108.30 110.37 C C C O4' C1' N1 DT DT DT 37 37 37 N 1 2.12 0.30 108.30 110.42 C C C O4' C1' N9 DA DA DA 48 48 48 N 1 3.41 0.30 108.30 111.71 C C C O4' C1' N9 DG DG DG 52 52 52 N 1 3.15 0.30 108.30 111.45 C C C O4' C1' N9 DA DA DA 54 54 54 N 1 2.72 0.30 108.30 111.02 C C C O4' C1' N9 DA DA DA 56 56 56 N 1 -5.37 0.80 102.40 97.03 C C C C3' C2' C1' DG DG DG 57 57 57 N 1 3.57 0.30 108.30 111.87 E E E O4' C1' N1 DT DT DT 1 1 1 N 1 -4.85 0.80 102.40 97.55 E E E C3' C2' C1' DT DT DT 6 6 6 N 1 -4.55 0.40 104.50 99.95 E E E O4' C4' C3' DT DT DT 8 8 8 N 1 -4.97 0.80 102.40 97.43 E E E C3' C2' C1' DT DT DT 8 8 8 N 1 A A O3' C3' DC DC 8 8 -0.050 0.006 1.419 1.369 N 1 B B C1' N1 DC DC 14 14 0.127 0.013 1.488 1.615 N 1 C C O3' C3' DG DG 4 4 0.099 0.013 1.435 1.534 N 1 C C O3' C3' DC DC 11 11 -0.066 0.006 1.419 1.353 N 1 C C C5' C4' DC DC 45 45 0.055 0.007 1.512 1.567 N 1 C C O3' C3' DG DG 52 52 -0.058 0.006 1.419 1.361 N 1 C C O3' C3' DC DC 55 55 -0.037 0.006 1.419 1.382 N 1 C C O3' C3' DA DA 56 56 -0.070 0.006 1.419 1.349 N 1 E E O3' C3' DC DC 3 3 -0.052 0.006 1.419 1.367 N 1 E E O3' C3' DG DG 4 4 0.083 0.013 1.435 1.518 N 1 E E C1' N1 DT DT 6 6 -0.112 0.014 1.468 1.356 N 1 E E O3' C3' DG DG 7 7 -0.042 0.006 1.419 1.377 N 1 E E C1' N1 DT DT 8 8 -0.094 0.014 1.468 1.374 N 1 A E N1 O2 DG DT 3 1 1.86 1_555 4_445 1 A E O2 N2 DC DG 1 2 2.00 1_555 4_445 1 A C O6 N4 DG DC 10 11 2.18 1_555 2_555 400.23 0.2220 0.1426 0.1512 7.32 33.23 120 1061 1181 10.16 99.83 1.0201 1 FREE R-VALUE 1.98 MOLECULAR REPLACEMENT 17.9424 0.9000 1.1000 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 7.32 33.23 0 1713 0 1713 0 0.0161 1918 1.3883 2948 0.0894 334 0.0073 84 35.0318 823 0.2220 0.1426 33.23 120 1061 99.83 145.77 7.29 50 9DGN 1183 0.063 1 10.6 5.7 99.08 7.29 7.55 116 0.699 1 refinement PHENIX 1.20.1_4487 data reduction HKL-2000 data scaling HKL-2000 phasing PHASER 146 trigonal R 3 :H R 3 x,y,z -y,x-y,z -x+y,-x,z x+1/3,y+2/3,z+2/3 -y+1/3,x-y+2/3,z+2/3 -x+y+1/3,-x+2/3,z+2/3 x+2/3,y+1/3,z+1/3 -y+2/3,x-y+1/3,z+1/3 -x+y+2/3,-x+1/3,z+1/3 N T-junction triangle 7-11 1 N N 2 N N 3 N N 4 N N hydrog DC-DG PAIR A DC 4 A N4 DC 4 1_555 B DG 13 B O6 DG 5 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 12 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 12 B O4 DT 4 1_555 hydrog REVERSED WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 11 B O2 DC 3 1_555 hydrog REVERSED WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 11 B N3 DC 3 1_555 hydrog DC-DG PAIR A DC 7 A O2 DC 7 1_555 B DG 10 B N1 DG 2 1_555 hydrog DC-DG PAIR A DC 8 A N3 DC 8 1_555 B DG 9 B N1 DG 1 1_555 hydrog WATSON-CRICK C DC 13 C N3 DC 13 1_555 C DG 53 C N1 DG 53 1_555 hydrog WATSON-CRICK C DC 13 C N4 DC 13 1_555 C DG 53 C O6 DG 53 1_555 hydrog WATSON-CRICK C DC 13 C O2 DC 13 1_555 C DG 53 C N2 DG 53 1_555 hydrog WATSON-CRICK C DC 14 C N3 DC 14 1_555 C DG 52 C N1 DG 52 1_555 hydrog WATSON-CRICK C DC 14 C N4 DC 14 1_555 C DG 52 C O6 DG 52 1_555 hydrog WATSON-CRICK C DC 14 C O2 DC 14 1_555 C DG 52 C N2 DG 52 1_555 hydrog DG-DC PAIR C DG 15 C O6 DG 15 1_555 C DC 50 C N4 DC 50 1_555 hydrog DG-DC PAIR C DG 15 C N1 DG 15 1_555 C DC 51 C O2 DC 51 1_555 hydrog TYPE_3_PAIR C DG 16 C N1 DG 16 1_555 C DG 49 C O6 DG 49 1_555 hydrog TYPE_3_PAIR C DG 16 C O6 DG 16 1_555 C DG 49 C N1 DG 49 1_555 hydrog DC-DG PAIR C DC 17 C O2 DC 17 1_555 C DG 49 C N2 DG 49 1_555 hydrog WATSON-CRICK C DC 18 C N3 DC 18 1_555 C DG 43 C N1 DG 43 1_555 hydrog WATSON-CRICK C DC 18 C N4 DC 18 1_555 C DG 43 C O6 DG 43 1_555 hydrog WATSON-CRICK C DC 18 C O2 DC 18 1_555 C DG 43 C N2 DG 43 1_555 hydrog REVERSED WATSON-CRICK C DC 19 C N3 DC 19 1_555 C DG 42 C N2 DG 42 1_555 hydrog REVERSED WATSON-CRICK C DC 19 C O2 DC 19 1_555 C DG 42 C N1 DG 42 1_555 hydrog WATSON-CRICK C DG 20 C N1 DG 20 1_555 C DC 41 C N3 DC 41 1_555 hydrog WATSON-CRICK C DG 20 C N2 DG 20 1_555 C DC 41 C O2 DC 41 1_555 hydrog WATSON-CRICK C DG 20 C O6 DG 20 1_555 C DC 41 C N4 DC 41 1_555 hydrog DC-DG PAIR C DC 21 C O2 DC 21 1_555 C DG 40 C N1 DG 40 1_555 hydrog WATSON-CRICK C DG 22 C N1 DG 22 1_555 C DC 39 C N3 DC 39 1_555 hydrog WATSON-CRICK C DG 22 C N2 DG 22 1_555 C DC 39 C O2 DC 39 1_555 hydrog WATSON-CRICK C DG 22 C O6 DG 22 1_555 C DC 39 C N4 DC 39 1_555 hydrog WATSON-CRICK C DG 23 C N1 DG 23 1_555 C DC 38 C N3 DC 38 1_555 hydrog WATSON-CRICK C DG 23 C N2 DG 23 1_555 C DC 38 C O2 DC 38 1_555 hydrog WATSON-CRICK C DG 23 C O6 DG 23 1_555 C DC 38 C N4 DC 38 1_555 hydrog TYPE_8_PAIR C DA 24 C N1 DA 24 1_555 C DG 36 C N1 DG 36 1_555 hydrog TYPE_8_PAIR C DA 24 C N6 DA 24 1_555 C DG 36 C O6 DG 36 1_555 hydrog WATSON-CRICK C DA 24 C N1 DA 24 1_555 C DT 37 C N3 DT 37 1_555 hydrog WATSON-CRICK C DA 24 C N6 DA 24 1_555 C DT 37 C O4 DT 37 1_555 hydrog WATSON-CRICK C DC 25 C N3 DC 25 1_555 C DG 36 C N1 DG 36 1_555 hydrog WATSON-CRICK C DC 25 C N4 DC 25 1_555 C DG 36 C O6 DG 36 1_555 hydrog WATSON-CRICK C DC 25 C O2 DC 25 1_555 C DG 36 C N2 DG 36 1_555 hydrog DA-DT PAIR C DA 26 C N1 DA 26 1_555 C DT 35 C N3 DT 35 1_555 hydrog WATSON-CRICK C DC 28 C N3 DC 28 1_555 C DG 33 C N1 DG 33 1_555 hydrog WATSON-CRICK C DC 28 C N4 DC 28 1_555 C DG 33 C O6 DG 33 1_555 hydrog WATSON-CRICK C DC 28 C O2 DC 28 1_555 C DG 33 C N2 DG 33 1_555 hydrog TYPE_8_PAIR C DA 54 C N1 DA 54 1_555 E DG 7 D N1 DG 7 1_555 hydrog TYPE_8_PAIR C DA 54 C N6 DA 54 1_555 E DG 7 D O6 DG 7 1_555 hydrog WATSON-CRICK C DA 54 C N1 DA 54 1_555 E DT 8 D N3 DT 8 1_555 hydrog WATSON-CRICK C DA 54 C N6 DA 54 1_555 E DT 8 D O4 DT 8 1_555 hydrog WATSON-CRICK C DC 55 C N3 DC 55 1_555 E DG 7 D N1 DG 7 1_555 hydrog WATSON-CRICK C DC 55 C N4 DC 55 1_555 E DG 7 D O6 DG 7 1_555 hydrog WATSON-CRICK C DC 55 C O2 DC 55 1_555 E DG 7 D N2 DG 7 1_555 hydrog DA-DC MISPAIR C DA 56 C N1 DA 56 1_555 E DC 5 D N4 DC 5 1_555 hydrog WATSON-CRICK C DG 57 C N1 DG 57 1_555 E DC 5 D N3 DC 5 1_555 hydrog WATSON-CRICK C DG 57 C N2 DG 57 1_555 E DC 5 D O2 DC 5 1_555 hydrog WATSON-CRICK C DG 57 C O6 DG 57 1_555 E DC 5 D N4 DC 5 1_555 hydrog REVERSED WATSON-CRICK C DC 58 C N3 DC 58 1_555 E DG 4 D N2 DG 4 1_555 hydrog REVERSED WATSON-CRICK C DC 58 C O2 DC 58 1_555 E DG 4 D N1 DG 4 1_555 hydrog DG-DG MISPAIR C DG 59 C O6 DG 59 1_555 E DG 2 D N1 DG 2 1_555 hydrog DG-DC PAIR C DG 59 C N1 DG 59 1_555 E DC 3 D O2 DC 3 1_555 DNA Structure of DNA tensegrity triangle with T junctions, Design T-7-11, DNA 9DGN PDB 1 1 9DGN 9DGN PDB 2 1 9DGN 9DGN PDB 3 1 9DGN 9DGN PDB 4 1 9DGN 1 15 9DGN 1 15 9DGN A 1 1 15 9 14 9DGN 9 14 9DGN B 2 1 6 1 59 9DGN 1 59 9DGN C 3 1 59 1 8 9DGN 1 8 9DGN E 4 1 8 146 H 3 R 3