0.005971 0.003447 0.000000 0.000000 0.006894 0.000000 0.000000 0.000000 0.012804 0.00000 0.00000 0.00000 5.96793 14.89577 0.0 1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 6.96715 11.43723 0.0 1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 7.96527 9.05267 0.0 1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 14.90797 11.91318 0.0 1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0009-0000-3495-8434 Koomullam, N. 0000-0001-7516-8666 Mao, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.000 90.000 120.000 167.490 167.490 78.099 1897378.041 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing GE Angew.Chem.Int.Ed.Engl. ACIEAY 0179 1521-3773 64 e18174 e18174 10.1002/anie.202518174 41165523 Crystallographic Study of DNA T-Junction via Crystal Engineering. 2025 0000-0001-7516-8666 10.2210/pdb9dgm/pdb pdb_00009dgm 100 1 N IMAGE PLATE 2016-08-18 RIGAKU RAXIS IV++ SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE RIGAKU R-AXIS IV 4867.181 DNA (5'-D(*CP*AP*GP*CP*AP*GP*CP*CP*TP*GP*AP*AP*TP*AP*CP*T)-3') 1 syn polymer 1825.216 DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3') 1 syn polymer 17869.389 DNA (58-MER) 1 syn polymer 2433.602 DNA (5'-D(*TP*GP*CP*GP*CP*TP*GP*T)-3') 1 syn polymer no no (DC)(DA)(DG)(DC)(DA)(DG)(DC)(DC)(DT)(DG)(DA)(DA)(DT)(DA)(DC)(DT) CAGCAGCCTGAATACT A polydeoxyribonucleotide no no (DG)(DG)(DC)(DT)(DG)(DC) GGCTGC B polydeoxyribonucleotide no no (DC)(DT)(DG)(DC)(DG)(DA)(DG)(DT)(DA)(DT)(DT)(DC)(DA)(DC)(DC)(DG)(DG)(DC)(DC)(DG) (DC)(DG)(DG)(DA)(DC)(DA)(DA)(DC)(DT)(DT)(DT)(DT)(DG)(DT)(DT)(DG)(DT)(DC)(DC)(DG) (DC)(DG)(DG)(DC)(DG)(DC)(DA)(DG)(DC)(DC)(DG)(DG)(DA)(DC)(DA)(DG)(DC)(DG) CTGCGAGTATTCACCGGCCGCGGACAACTTTTGTTGTCCGCGGCGCAGCCGGACAGCG C polydeoxyribonucleotide no no (DT)(DG)(DC)(DG)(DC)(DT)(DG)(DT) TGCGCTGT E polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 7.72 84.06 VAPOR DIFFUSION, HANGING DROP DNA strands mixed with TAE/Mg2+ and 0.001 M Magnesium chloride hexahydrate, 0.005 M Tris hydrochloride, pH=7.5, 0.16 M Ammonium sulfate, 0.23 M sucrose and crystallized against (NH4)2SO4 298 2.394 1 19 A 3 B 14 -8.834 A_DG3:DC14_B 1 -2.422 -1.251 -1.035 -0.197 18.273 1 A 4 B 13 12.200 A_DC4:DG13_B 2 -1.965 3.012 -1.134 -0.419 -1.388 1 20 A 5 B 12 -10.001 A_DA5:DT12_B 3 -7.347 -0.107 -0.138 -0.417 7.524 1 19 A 6 B 11 -0.947 A_DG6:DC11_B 4 -9.660 -0.376 0.782 -0.650 8.620 1 19 A 7 B 10 10.148 A_DC7:DG10_B 5 -8.688 2.332 0.154 -0.889 -19.486 1 19 A 8 B 9 -13.803 A_DC8:DG9_B 6 23.100 0.423 -1.408 -1.298 -3.621 1 19 C 49 C 17 6.061 C_DC49:DG17_C 7 -30.628 -0.450 0.397 0.056 20.262 1 19 C 50 C 16 -10.366 C_DC50:DG16_C 8 -12.449 1.084 0.178 -0.207 -54.721 1 19 C 51 C 15 0.730 C_DG51:DC15_C 9 -28.269 -0.166 -1.231 0.335 -16.137 1 19 C 52 C 14 -8.711 C_DG52:DC14_C 10 -12.976 -0.481 -0.184 -0.432 15.448 1 20 C 53 E 8 -0.241 C_DA53:DT8_E 11 -14.684 1.253 0.621 -0.199 9.520 1 C 54 E 7 8.284 C_DC54:DG7_E 12 -13.656 1.321 1.080 -0.922 15.667 1 C 55 E 6 16.591 C_DA55:DT6_E 13 -34.730 2.497 1.942 -0.389 2.511 1 19 C 56 E 5 1.589 C_DG56:DC5_E 14 -16.979 0.361 -0.181 -0.680 -22.133 1 22 C 57 E 4 14.950 C_DC57:DG4_E 15 -21.177 -0.583 1.382 -0.196 -21.189 1 22 C 58 E 3 1.203 C_DG58:DC3_E 16 -21.577 -0.512 -0.599 -1.254 -50.057 1 22 C 18 C 43 -5.278 C_DC18:DG43_C 17 15.701 -0.359 1.935 -0.836 -17.828 1 19 C 19 C 42 -2.492 C_DC19:DG42_C 18 -30.431 1.134 0.717 -0.429 3.822 1 19 C 20 C 41 -2.226 C_DG20:DC41_C 19 -7.468 0.430 1.153 -0.682 6.337 C 21 C 40 18.594 C_DC21:DG40_C 20 -8.094 3.699 0.640 -0.479 15.182 1 19 C 22 C 39 5.057 C_DG22:DC39_C 21 -12.489 -0.062 0.793 -0.225 11.981 1 19 C 23 C 38 -9.970 C_DG23:DC38_C 22 -0.528 -0.811 0.770 -0.573 15.399 1 20 C 24 C 37 -4.275 C_DA24:DT37_C 23 8.463 -0.497 0.260 -0.501 12.119 1 19 C 25 C 36 1.786 C_DC25:DG36_C 24 -11.037 -1.149 0.916 -0.394 20.125 1 20 C 26 C 35 -2.468 C_DA26:DT35_C 25 -17.810 -0.453 0.962 0.380 -6.793 1 19 C 28 C 33 6.172 C_DC28:DG33_C 26 -16.866 0.912 0.312 0.313 2.563 49.025 A A 3 4 3.157 B B 14 13 2.593 2.618 1.384 -0.222 AA_DG3DC4:DG13DC14_BB 1 -0.583 0.703 48.956 -0.423 -1.703 3.491 29.487 A A 4 5 19.837 B B 13 12 3.375 9.771 -2.202 -0.527 AA_DC4DA5:DT12DG13_BB 2 -8.368 16.988 26.589 -3.342 2.351 3.505 45.575 A A 5 6 -31.978 B B 12 11 3.557 -23.666 1.389 -0.958 AA_DA5DG6:DC11DT12_BB 3 -1.800 2.432 39.191 1.200 -1.978 3.286 49.450 A A 6 7 -16.282 B B 11 10 3.396 -13.447 0.329 0.047 AA_DG6DC7:DG10DC11_BB 4 5.068 -6.137 47.442 1.099 -0.001 3.963 48.408 A A 7 8 -14.603 B B 10 9 4.161 -11.815 -1.228 -0.705 AA_DC7DC8:DG9DG10_BB 5 8.108 -10.021 46.361 0.306 2.297 2.743 41.723 C C 49 50 2.680 C C 17 16 2.750 1.908 -0.943 -0.725 CC_DC49DC50:DG16DG17_CC 6 -1.334 1.874 41.661 -1.186 1.206 4.961 40.646 C C 50 51 1.745 C C 16 15 5.163 1.199 -0.050 -0.825 CC_DC50DG51:DC15DG16_CC 7 10.610 -15.441 39.276 -1.397 1.929 2.042 29.719 C C 51 52 -7.075 C C 15 14 2.198 -3.606 0.610 0.179 CC_DG51DG52:DC14DC15_CC 8 -4.651 9.126 29.144 0.845 -1.828 2.687 22.973 C C 52 53 3.663 C E 14 8 2.124 1.431 -2.450 -1.943 CC_DG52DA53:DT8DC14_EC 9 -7.630 19.531 21.639 -5.262 4.110 2.836 34.279 C C 53 54 11.141 E E 8 7 3.107 6.528 0.818 -1.016 CC_DA53DC54:DG7DT8_EE 10 -1.163 1.985 33.651 -2.664 -1.555 3.264 40.962 C C 54 55 -4.029 E E 7 6 3.388 -2.783 0.432 1.650 CC_DC54DA55:DT6DG7_EE 11 11.482 -16.625 39.292 2.674 0.688 3.823 36.345 C C 55 56 -10.579 E E 6 5 3.879 -6.562 -0.523 0.108 CC_DA55DG56:DC5DT6_EE 12 -1.976 3.185 35.715 1.260 0.511 3.357 47.597 C C 56 57 -12.154 E E 5 4 3.604 -9.667 0.202 0.243 CC_DG56DC57:DG4DC5_EE 13 -11.001 13.831 45.414 1.148 -1.215 2.116 41.158 C C 57 58 36.440 E E 4 3 3.264 24.038 -1.427 -1.252 CC_DC57DG58:DC3DG4_EE 14 -4.937 7.484 33.300 -4.173 1.539 2.714 52.310 C C 18 19 -9.168 C C 43 42 3.014 -7.839 -0.113 -0.130 CC_DC18DC19:DG42DG43_CC 15 21.762 -25.453 47.244 0.334 1.462 2.535 25.750 C C 19 20 -3.653 C C 42 41 2.597 -1.607 -0.107 -0.187 CC_DC19DG20:DC41DG42_CC 16 -7.104 16.153 24.716 -0.058 -1.354 3.881 58.346 C C 20 21 -6.818 C C 41 40 3.782 -6.586 1.438 0.945 CC_DG20DC21:DG40DC41_CC 17 13.351 -13.822 56.577 1.382 -0.639 2.214 21.391 C C 21 22 27.055 C C 40 39 2.504 9.664 -0.766 -0.205 CC_DC21DG22:DC39DG40_CC 18 -2.332 6.530 18.964 -3.566 1.336 3.409 36.200 C C 22 23 -4.400 C C 39 38 3.265 -2.717 -0.795 -0.873 CC_DG22DG23:DC38DC39_CC 19 -6.707 10.863 35.493 -1.011 0.307 3.613 36.699 C C 23 24 -12.063 C C 38 37 3.497 -7.544 0.194 -0.923 CC_DG23DA24:DT37DC38_CC 20 0.358 -0.572 35.940 -0.332 -0.254 3.464 42.607 C C 24 25 -10.269 C C 37 36 3.436 -7.427 0.523 -0.450 CC_DA24DC25:DG36DT37_CC 21 0.057 -0.079 41.984 0.176 -0.714 3.074 41.922 C C 25 26 -16.971 C C 36 35 3.033 -11.983 0.066 -0.573 CC_DC25DA26:DT35DG36_CC 22 1.854 -2.625 40.205 0.392 0.092 citation repository Initial release Database references 1 0 2025-11-12 1 1 2025-12-24 _citation.journal_volume United States National Science Foundation (NSF, United States) CCF 2107393 mao@purdue.edu 0000-0001-7516-8666 Chengde Mao principal investigator/group leader N RCSB Y RCSB 2024-09-02 REL REL 32630 synthetic construct sample 1 16 32630 synthetic construct sample 1 6 32630 synthetic construct sample 1 58 32630 synthetic construct sample 1 8 N B DNA duplex with 31 base pairs Other in silico model DC 1 n 1 DC 1 A DA 2 n 2 DA 2 A DG 3 n 3 DG 3 A DC 4 n 4 DC 4 A DA 5 n 5 DA 5 A DG 6 n 6 DG 6 A DC 7 n 7 DC 7 A DC 8 n 8 DC 8 A DT 9 n 9 DT 9 A DG 10 n 10 DG 10 A DA 11 n 11 DA 11 A DA 12 n 12 DA 12 A DT 13 n 13 DT 13 A DA 14 n 14 DA 14 A DC 15 n 15 DC 15 A DT 16 n 16 DT 16 A DG 9 n 1 DG 9 B DG 10 n 2 DG 10 B DC 11 n 3 DC 11 B DT 12 n 4 DT 12 B DG 13 n 5 DG 13 B DC 14 n 6 DC 14 B DC 1 n 1 DC 1 C DT 2 n 2 DT 2 C DG 3 n 3 DG 3 C DC 4 n 4 DC 4 C DG 5 n 5 DG 5 C DA 6 n 6 DA 6 C DG 7 n 7 DG 7 C DT 8 n 8 DT 8 C DA 9 n 9 DA 9 C DT 10 n 10 DT 10 C DT 11 n 11 DT 11 C DC 12 n 12 DC 12 C DA 13 n 13 DA 13 C DC 14 n 14 DC 14 C DC 15 n 15 DC 15 C DG 16 n 16 DG 16 C DG 17 n 17 DG 17 C DC 18 n 18 DC 18 C DC 19 n 19 DC 19 C DG 20 n 20 DG 20 C DC 21 n 21 DC 21 C DG 22 n 22 DG 22 C DG 23 n 23 DG 23 C DA 24 n 24 DA 24 C DC 25 n 25 DC 25 C DA 26 n 26 DA 26 C DA 27 n 27 DA 27 C DC 28 n 28 DC 28 C n 29 29 C n 30 30 C n 31 31 C n 32 32 C DG 33 n 33 DG 33 C DT 34 n 34 DT 34 C DT 35 n 35 DT 35 C DG 36 n 36 DG 36 C DT 37 n 37 DT 37 C DC 38 n 38 DC 38 C DC 39 n 39 DC 39 C DG 40 n 40 DG 40 C DC 41 n 41 DC 41 C DG 42 n 42 DG 42 C DG 43 n 43 DG 43 C DC 44 n 44 DC 44 C DG 45 n 45 DG 45 C DC 46 n 46 DC 46 C DA 47 n 47 DA 47 C DG 48 n 48 DG 48 C DC 49 n 49 DC 49 C DC 50 n 50 DC 50 C DG 51 n 51 DG 51 C DG 52 n 52 DG 52 C DA 53 n 53 DA 53 C DC 54 n 54 DC 54 C DA 55 n 55 DA 55 C DG 56 n 56 DG 56 C DC 57 n 57 DC 57 C DG 58 n 58 DG 58 C DT 1 n 1 DT 1 E DG 2 n 2 DG 2 E DC 3 n 3 DC 3 E DG 4 n 4 DG 4 E DC 5 n 5 DC 5 E DT 6 n 6 DT 6 E DG 7 n 7 DG 7 E DT 8 n 8 DT 8 E author_defined_assembly 12 dodecameric native gel electrophoresis 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 C C7 DT 34 C C7 DT 34 1 Y 1 C C7 DT 35 C C7 DT 35 1 Y 1 C C7 DT 37 C C7 DT 37 1 Y 1 C DT 29 C DT 29 1 Y 1 C DT 30 C DT 30 1 Y 1 C DT 31 C DT 31 1 Y 1 C DT 32 C DT 32 1 Y 1 C E N1 N3 DG DC 58 3 1.92 1 C E O6 N4 DG DC 58 3 1.95 1 C E O2 N2 DC DG 57 4 1.96 1 C E N2 O2 DG DC 58 3 2.03 1 C C N4 O6 DC DG 18 43 2.06 1 A B O2 N2 DT DG 9 9 2.13 1 C E N4 O4 DC DT 54 6 2.14 1 C E O2 N2 DC DG 54 7 2.17 1 A B O2 N1 DC DG 7 10 2.18 1 -4.93 0.80 102.40 97.47 A A A C3' C2' C1' DA DA DA 2 2 2 N 1 2.70 0.30 108.30 111.00 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 2.13 0.30 108.30 110.43 A A A O4' C1' N9 DA DA DA 11 11 11 N 1 -5.22 0.80 102.40 97.18 A A A C3' C2' C1' DT DT DT 13 13 13 N 1 2.63 0.30 108.30 110.93 B B B O4' C1' N1 DT DT DT 12 12 12 N 1 -5.53 0.80 102.40 96.87 C C C C3' C2' C1' DG DG DG 3 3 3 N 1 2.48 0.30 108.30 110.78 C C C O4' C1' N1 DT DT DT 8 8 8 N 1 2.00 0.30 108.30 110.30 C C C O4' C1' N9 DA DA DA 9 9 9 N 1 11.78 1.20 119.70 131.48 C C C C3' O3' P DA DA DC 13 13 14 Y 1 7.54 1.10 110.50 118.04 C C C O3' P OP1 DA DC DC 13 14 14 Y 1 1.82 0.30 108.30 110.12 C C C O4' C1' N9 DG DG DG 16 16 16 N 1 1.98 0.30 108.30 110.28 C C C O4' C1' N1 DT DT DT 34 34 34 N 1 3.02 0.30 108.30 111.32 C C C O4' C1' N9 DA DA DA 47 47 47 N 1 2.50 0.30 108.30 110.80 C C C O4' C1' N1 DC DC DC 54 54 54 N 1 -6.39 0.80 102.40 96.01 C C C C3' C2' C1' DG DG DG 56 56 56 N 1 2.82 0.30 108.30 111.12 C C C O4' C1' N9 DG DG DG 56 56 56 N 1 A A C5' C4' DC DC 15 15 0.051 0.007 1.512 1.563 N 1 C C O3' C3' DG DG 3 3 -0.039 0.006 1.419 1.380 N 1 C C O3' C3' DG DG 7 7 0.084 0.013 1.435 1.519 N 1 E E O3' C3' DT DT 6 6 -0.049 0.006 1.419 1.370 N 1 C C O2 N2 DC DG 1 48 1.89 1_555 3_555 1 A E N2 O5' DG DT 3 1 2.05 1_555 4_455 1 B E O4' OP1 DG DT 9 8 2.08 1_555 2_555 1 A E O2 N2 DC DG 1 2 2.11 1_555 4_455 1 A C N3 N1 DT DA 13 9 2.16 1_555 2_555 314.86 0.2297 0.1729 0.1790 6.63 34.38 146 1310 1456 10.03 96.49 0.7043 1 FREE R-VALUE 1.98 MOLECULAR REPLACEMENT 22.6808 0.9000 1.1000 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 6.63 34.38 0 1713 0 1713 0 0.0126 1918 1.2769 2948 0.0783 334 0.0069 84 35.2806 823 0.2297 0.1729 34.38 146 1310 96.49 157.16 6.63 50 9DGM 1462 0.053 1 14.7 6.6 96.25 6.63 6.98 135 0.812 1 refinement PHENIX 1.20.1_4487 data reduction HKL-2000 data scaling HKL-2000 phasing PHASER 146 trigonal R 3 :H R 3 x,y,z -y,x-y,z -x+y,-x,z x+1/3,y+2/3,z+2/3 -y+1/3,x-y+2/3,z+2/3 -x+y+1/3,-x+2/3,z+2/3 x+2/3,y+1/3,z+1/3 -y+2/3,x-y+1/3,z+1/3 -x+y+2/3,-x+1/3,z+1/3 N T-junction triangle 8-11 1 N N 2 N N 3 N N 4 N N hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 14 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 14 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 14 B N4 DC 6 1_555 hydrog DC-DG PAIR A DC 4 A O2 DC 4 1_555 B DG 13 B N1 DG 5 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 12 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 12 B O4 DT 4 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 11 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 11 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 11 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 B DG 10 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 B DG 10 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 B DG 10 B N2 DG 2 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 9 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 9 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 9 B N2 DG 1 1_555 hydrog TYPE_28_PAIR A DT 9 A N3 DT 9 1_555 B DG 9 B O6 DG 1 1_555 hydrog TYPE_28_PAIR A DT 9 A O2 DT 9 1_555 B DG 9 B N1 DG 1 1_555 hydrog WATSON-CRICK C DC 14 C N3 DC 14 1_555 C DG 52 C N1 DG 52 1_555 hydrog WATSON-CRICK C DC 14 C N4 DC 14 1_555 C DG 52 C O6 DG 52 1_555 hydrog WATSON-CRICK C DC 14 C O2 DC 14 1_555 C DG 52 C N2 DG 52 1_555 hydrog WATSON-CRICK C DC 15 C N3 DC 15 1_555 C DG 51 C N1 DG 51 1_555 hydrog WATSON-CRICK C DC 15 C N4 DC 15 1_555 C DG 51 C O6 DG 51 1_555 hydrog WATSON-CRICK C DC 15 C O2 DC 15 1_555 C DG 51 C N2 DG 51 1_555 hydrog WATSON-CRICK C DG 16 C N1 DG 16 1_555 C DC 50 C N3 DC 50 1_555 hydrog WATSON-CRICK C DG 16 C N2 DG 16 1_555 C DC 50 C O2 DC 50 1_555 hydrog WATSON-CRICK C DG 16 C O6 DG 16 1_555 C DC 50 C N4 DC 50 1_555 hydrog WATSON-CRICK C DG 17 C N1 DG 17 1_555 C DC 49 C N3 DC 49 1_555 hydrog WATSON-CRICK C DG 17 C N2 DG 17 1_555 C DC 49 C O2 DC 49 1_555 hydrog WATSON-CRICK C DG 17 C O6 DG 17 1_555 C DC 49 C N4 DC 49 1_555 hydrog REVERSED WATSON-CRICK C DC 18 C N3 DC 18 1_555 C DG 43 C N2 DG 43 1_555 hydrog REVERSED WATSON-CRICK C DC 18 C O2 DC 18 1_555 C DG 43 C N1 DG 43 1_555 hydrog WATSON-CRICK C DC 19 C N3 DC 19 1_555 C DG 42 C N1 DG 42 1_555 hydrog WATSON-CRICK C DC 19 C N4 DC 19 1_555 C DG 42 C O6 DG 42 1_555 hydrog WATSON-CRICK C DC 19 C O2 DC 19 1_555 C DG 42 C N2 DG 42 1_555 hydrog WATSON-CRICK C DG 20 C N1 DG 20 1_555 C DC 41 C N3 DC 41 1_555 hydrog WATSON-CRICK C DG 20 C N2 DG 20 1_555 C DC 41 C O2 DC 41 1_555 hydrog WATSON-CRICK C DG 20 C O6 DG 20 1_555 C DC 41 C N4 DC 41 1_555 hydrog DC-DG PAIR C DC 21 C O2 DC 21 1_555 C DG 40 C N1 DG 40 1_555 hydrog WATSON-CRICK C DG 22 C N1 DG 22 1_555 C DC 39 C N3 DC 39 1_555 hydrog WATSON-CRICK C DG 22 C N2 DG 22 1_555 C DC 39 C O2 DC 39 1_555 hydrog WATSON-CRICK C DG 22 C O6 DG 22 1_555 C DC 39 C N4 DC 39 1_555 hydrog WATSON-CRICK C DG 23 C N1 DG 23 1_555 C DC 38 C N3 DC 38 1_555 hydrog WATSON-CRICK C DG 23 C N2 DG 23 1_555 C DC 38 C O2 DC 38 1_555 hydrog WATSON-CRICK C DG 23 C O6 DG 23 1_555 C DC 38 C N4 DC 38 1_555 hydrog WATSON-CRICK C DA 24 C N1 DA 24 1_555 C DT 37 C N3 DT 37 1_555 hydrog WATSON-CRICK C DA 24 C N6 DA 24 1_555 C DT 37 C O4 DT 37 1_555 hydrog WATSON-CRICK C DC 25 C N3 DC 25 1_555 C DG 36 C N1 DG 36 1_555 hydrog WATSON-CRICK C DC 25 C N4 DC 25 1_555 C DG 36 C O6 DG 36 1_555 hydrog WATSON-CRICK C DC 25 C O2 DC 25 1_555 C DG 36 C N2 DG 36 1_555 hydrog WATSON-CRICK C DA 26 C N1 DA 26 1_555 C DT 35 C N3 DT 35 1_555 hydrog WATSON-CRICK C DA 26 C N6 DA 26 1_555 C DT 35 C O4 DT 35 1_555 hydrog WATSON-CRICK C DC 28 C N3 DC 28 1_555 C DG 33 C N1 DG 33 1_555 hydrog WATSON-CRICK C DC 28 C N4 DC 28 1_555 C DG 33 C O6 DG 33 1_555 hydrog WATSON-CRICK C DC 28 C O2 DC 28 1_555 C DG 33 C N2 DG 33 1_555 hydrog TYPE_8_PAIR C DA 53 C N1 DA 53 1_555 E DG 7 D N1 DG 7 1_555 hydrog TYPE_8_PAIR C DA 53 C N6 DA 53 1_555 E DG 7 D O6 DG 7 1_555 hydrog WATSON-CRICK C DA 53 C N1 DA 53 1_555 E DT 8 D N3 DT 8 1_555 hydrog WATSON-CRICK C DA 53 C N6 DA 53 1_555 E DT 8 D O4 DT 8 1_555 hydrog DC-DT MISPAIR C DC 54 C N3 DC 54 1_555 E DT 6 D N3 DT 6 1_555 hydrog DC-DG PAIR C DC 54 C O2 DC 54 1_555 E DG 7 D N1 DG 7 1_555 hydrog DA-DT PAIR C DA 55 C N1 DA 55 1_555 E DT 6 D N3 DT 6 1_555 hydrog WATSON-CRICK C DG 56 C N1 DG 56 1_555 E DC 5 D N3 DC 5 1_555 hydrog WATSON-CRICK C DG 56 C N2 DG 56 1_555 E DC 5 D O2 DC 5 1_555 hydrog WATSON-CRICK C DG 56 C O6 DG 56 1_555 E DC 5 D N4 DC 5 1_555 hydrog REVERSED WATSON-CRICK C DC 57 C N3 DC 57 1_555 E DG 4 D N2 DG 4 1_555 hydrog REVERSED WATSON-CRICK C DC 57 C O2 DC 57 1_555 E DG 4 D N1 DG 4 1_555 hydrog REVERSED WATSON-CRICK C DG 58 C N1 DG 58 1_555 E DC 3 D O2 DC 3 1_555 hydrog REVERSED WATSON-CRICK C DG 58 C N2 DG 58 1_555 E DC 3 D N3 DC 3 1_555 DNA Structure of DNA tensegrity triangle with T junctions, Design T-8-11, DNA 9DGM PDB 1 1 9DGM 9DGM PDB 2 1 9DGM 9DGM PDB 3 1 9DGM 9DGM PDB 4 1 9DGM 1 16 9DGM 1 16 9DGM A 1 1 16 9 14 9DGM 9 14 9DGM B 2 1 6 1 58 9DGM 1 58 9DGM C 3 1 58 1 8 9DGM 1 8 9DGM E 4 1 8 146 H 3 R 3