0.015750 0.000000 0.000000 0.000000 0.013302 0.000000 0.000000 0.000000 0.006001 0.00000 0.00000 0.00000 6 6 2.310 1.020 1.589 0.865 20.844 10.208 0.569 51.651 0.216 17 17 11.460 7.196 6.255 1.645 0.010 1.166 18.519 47.778 -9.345 1 1 0.493 0.323 0.140 0.041 10.511 26.126 3.142 57.800 0.003 7 7 12.222 3.135 2.014 1.167 0.006 9.893 28.997 0.583 -11.538 8 8 3.049 2.287 1.546 0.867 13.277 5.701 0.324 32.909 0.251 16 16 6.905 5.203 1.438 1.586 1.468 22.215 0.254 56.172 1.049 0000-0001-5820-4696 Sung, S. 0000-0003-4221-3162 Blaha, J. 0000-0002-4643-5435 Wilmanns, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 63.492 75.176 166.650 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N S N 306 N O N 307 N O N 308 N O N 309 N O N 310 N N N 311 S C N 312 N C N 313 N O N 314 R C N 315 N O N 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N N Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C N 383 N C N 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing To Be Published 0353 YopQ apo from Yersinia enterocolitica 0000-0001-5820-4696 0000-0003-4221-3162 0000-0002-4643-5435 0000-0002-8956-4448 0000-0003-2473-2970 10.2210/pdb8brf/pdb pdb_00008brf 100 1 N PIXEL 2021-09-24 DECTRIS EIGER X 16M SINGLE WAVELENGTH M x-ray 1 0.976200 1.0 P13 (MX1) PETRA III, EMBL c/o DESY 0.976200 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 20850.732 Protein YopQ 2 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 96.063 SULFATE ION 3 nat non-polymer 18.015 water 8 nat water no no MFIKDAYNMRALCTALEQSAPDTIINTSKEENNSYYCATAHLLRTDVCSLVNRVGIEPLKSGSILSTLEELWQAVGIIYR LYEWQHVSDIDTNFKKLPNNSDFGLVFSVLDCDIGYVITGKKDSKGNIELYDPKNSLLIENDDIKKYLYDENFHRFCIML IISKSELEELSRESCDQKCIMG MFIKDAYNMRALCTALEQSAPDTIINTSKEENNSYYCATAHLLRTDVCSLVNRVGIEPLKSGSILSTLEELWQAVGIIYR LYEWQHVSDIDTNFKKLPNNSDFGLVFSVLDCDIGYVITGKKDSKGNIELYDPKNSLLIENDDIKKYLYDENFHRFCIML IISKSELEELSRESCDQKCIMG BBB,AAA polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 182 yopQ, yop20 630 Yersinia enterocolitica 562 Escherichia coli Biological sequence 1 2.74 55.14 VAPOR DIFFUSION, HANGING DROP 0.1 M Tris-HCl, 2M AmSO4 293 pdbx_entry_details pdbx_modification_feature pdbx_initial_refinement_model repository Initial release Structure summary Refinement description 1 0 2023-12-13 1 1 2024-10-16 1 2 2026-03-04 _pdbx_entry_details.has_protein_modification Germany Joachim Herz Stiftung BioPict matthias.wilmanns@embl-hamburg.de 0000-0002-4643-5435 Matthias Wilmanns principal investigator/group leader N PDBE N PDBE 2022-11-23 REL REL 1 BBB O HOH 304 7.87 1 BBB O HOH 305 8.27 CL CHLORIDE ION SO4 SULFATE ION HOH water N Y AF-P27474-F1 AF-P27474-F1 AlphaFold in silico model BBB CYS 112 Disulfide bridge SG A CYS 112 BBB CYS 112 SG A CYS 112 7_555 1_555 None AAA CYS 112 Disulfide bridge SG B CYS 112 AAA CYS 112 SG B CYS 112 8_554 1_555 None CL 2 2 CL CL 201 BBB SO4 1 3 SO4 SO4 202 BBB SO4 3 3 SO4 SO4 203 BBB CL 1 2 CL CL 201 AAA SO4 2 3 SO4 SO4 202 AAA HOH 8 4 HOH HOH 301 BBB HOH 1 4 HOH HOH 302 BBB HOH 2 4 HOH HOH 303 BBB HOH 4 4 HOH HOH 304 BBB HOH 3 4 HOH HOH 305 BBB HOH 7 4 HOH HOH 301 AAA HOH 5 4 HOH HOH 302 AAA HOH 6 4 HOH HOH 303 AAA n 1 1 BBB n 2 2 BBB n 3 3 BBB n 4 4 BBB n 5 5 BBB n 6 6 BBB n 7 7 BBB n 8 8 BBB n 9 9 BBB n 10 10 BBB n 11 11 BBB n 12 12 BBB n 13 13 BBB n 14 14 BBB n 15 15 BBB n 16 16 BBB n 17 17 BBB n 18 18 BBB n 19 19 BBB n 20 20 BBB n 21 21 BBB n 22 22 BBB n 23 23 BBB n 24 24 BBB n 25 25 BBB n 26 26 BBB n 27 27 BBB n 28 28 BBB n 29 29 BBB GLU 30 n 30 GLU 30 BBB GLU 31 n 31 GLU 31 BBB ASN 32 n 32 ASN 32 BBB ASN 33 n 33 ASN 33 BBB SER 34 n 34 SER 34 BBB TYR 35 n 35 TYR 35 BBB TYR 36 n 36 TYR 36 BBB CYS 37 n 37 CYS 37 BBB ALA 38 n 38 ALA 38 BBB THR 39 n 39 THR 39 BBB ALA 40 n 40 ALA 40 BBB HIS 41 n 41 HIS 41 BBB LEU 42 n 42 LEU 42 BBB LEU 43 n 43 LEU 43 BBB ARG 44 n 44 ARG 44 BBB THR 45 n 45 THR 45 BBB ASP 46 n 46 ASP 46 BBB VAL 47 n 47 VAL 47 BBB CYS 48 n 48 CYS 48 BBB SER 49 n 49 SER 49 BBB LEU 50 n 50 LEU 50 BBB VAL 51 n 51 VAL 51 BBB ASN 52 n 52 ASN 52 BBB ARG 53 n 53 ARG 53 BBB VAL 54 n 54 VAL 54 BBB GLY 55 n 55 GLY 55 BBB ILE 56 n 56 ILE 56 BBB GLU 57 n 57 GLU 57 BBB PRO 58 n 58 PRO 58 BBB LEU 59 n 59 LEU 59 BBB LYS 60 n 60 LYS 60 BBB SER 61 n 61 SER 61 BBB GLY 62 n 62 GLY 62 BBB SER 63 n 63 SER 63 BBB ILE 64 n 64 ILE 64 BBB LEU 65 n 65 LEU 65 BBB SER 66 n 66 SER 66 BBB THR 67 n 67 THR 67 BBB LEU 68 n 68 LEU 68 BBB GLU 69 n 69 GLU 69 BBB GLU 70 n 70 GLU 70 BBB LEU 71 n 71 LEU 71 BBB TRP 72 n 72 TRP 72 BBB GLN 73 n 73 GLN 73 BBB ALA 74 n 74 ALA 74 BBB VAL 75 n 75 VAL 75 BBB GLY 76 n 76 GLY 76 BBB ILE 77 n 77 ILE 77 BBB ILE 78 n 78 ILE 78 BBB TYR 79 n 79 TYR 79 BBB ARG 80 n 80 ARG 80 BBB LEU 81 n 81 LEU 81 BBB TYR 82 n 82 TYR 82 BBB GLU 83 n 83 GLU 83 BBB TRP 84 n 84 TRP 84 BBB GLN 85 n 85 GLN 85 BBB HIS 86 n 86 HIS 86 BBB VAL 87 n 87 VAL 87 BBB SER 88 n 88 SER 88 BBB ASP 89 n 89 ASP 89 BBB ILE 90 n 90 ILE 90 BBB ASP 91 n 91 ASP 91 BBB THR 92 n 92 THR 92 BBB ASN 93 n 93 ASN 93 BBB PHE 94 n 94 PHE 94 BBB LYS 95 n 95 LYS 95 BBB LYS 96 n 96 LYS 96 BBB LEU 97 n 97 LEU 97 BBB PRO 98 n 98 PRO 98 BBB ASN 99 n 99 ASN 99 BBB ASN 100 n 100 ASN 100 BBB SER 101 n 101 SER 101 BBB ASP 102 n 102 ASP 102 BBB PHE 103 n 103 PHE 103 BBB GLY 104 n 104 GLY 104 BBB LEU 105 n 105 LEU 105 BBB VAL 106 n 106 VAL 106 BBB PHE 107 n 107 PHE 107 BBB SER 108 n 108 SER 108 BBB VAL 109 n 109 VAL 109 BBB LEU 110 n 110 LEU 110 BBB ASP 111 n 111 ASP 111 BBB CYS 112 n 112 CYS 112 BBB ASP 113 n 113 ASP 113 BBB ILE 114 n 114 ILE 114 BBB GLY 115 n 115 GLY 115 BBB TYR 116 n 116 TYR 116 BBB VAL 117 n 117 VAL 117 BBB ILE 118 n 118 ILE 118 BBB THR 119 n 119 THR 119 BBB GLY 120 n 120 GLY 120 BBB LYS 121 n 121 LYS 121 BBB LYS 122 n 122 LYS 122 BBB ASP 123 n 123 ASP 123 BBB SER 124 n 124 SER 124 BBB LYS 125 n 125 LYS 125 BBB GLY 126 n 126 GLY 126 BBB ASN 127 n 127 ASN 127 BBB ILE 128 n 128 ILE 128 BBB GLU 129 n 129 GLU 129 BBB LEU 130 n 130 LEU 130 BBB TYR 131 n 131 TYR 131 BBB ASP 132 n 132 ASP 132 BBB PRO 133 n 133 PRO 133 BBB LYS 134 n 134 LYS 134 BBB ASN 135 n 135 ASN 135 BBB SER 136 n 136 SER 136 BBB LEU 137 n 137 LEU 137 BBB LEU 138 n 138 LEU 138 BBB ILE 139 n 139 ILE 139 BBB GLU 140 n 140 GLU 140 BBB ASN 141 n 141 ASN 141 BBB ASP 142 n 142 ASP 142 BBB ASP 143 n 143 ASP 143 BBB ILE 144 n 144 ILE 144 BBB LYS 145 n 145 LYS 145 BBB LYS 146 n 146 LYS 146 BBB TYR 147 n 147 TYR 147 BBB LEU 148 n 148 LEU 148 BBB TYR 149 n 149 TYR 149 BBB ASP 150 n 150 ASP 150 BBB GLU 151 n 151 GLU 151 BBB ASN 152 n 152 ASN 152 BBB PHE 153 n 153 PHE 153 BBB HIS 154 n 154 HIS 154 BBB ARG 155 n 155 ARG 155 BBB PHE 156 n 156 PHE 156 BBB CYS 157 n 157 CYS 157 BBB ILE 158 n 158 ILE 158 BBB MET 159 n 159 MET 159 BBB LEU 160 n 160 LEU 160 BBB ILE 161 n 161 ILE 161 BBB ILE 162 n 162 ILE 162 BBB SER 163 n 163 SER 163 BBB LYS 164 n 164 LYS 164 BBB SER 165 n 165 SER 165 BBB GLU 166 n 166 GLU 166 BBB n 167 167 BBB n 168 168 BBB n 169 169 BBB n 170 170 BBB n 171 171 BBB n 172 172 BBB n 173 173 BBB n 174 174 BBB n 175 175 BBB n 176 176 BBB n 177 177 BBB n 178 178 BBB n 179 179 BBB n 180 180 BBB n 181 181 BBB n 182 182 BBB n 1 1 AAA n 2 2 AAA n 3 3 AAA n 4 4 AAA n 5 5 AAA n 6 6 AAA n 7 7 AAA n 8 8 AAA n 9 9 AAA n 10 10 AAA n 11 11 AAA n 12 12 AAA n 13 13 AAA n 14 14 AAA n 15 15 AAA n 16 16 AAA n 17 17 AAA n 18 18 AAA n 19 19 AAA ALA 20 n 20 ALA 20 AAA PRO 21 n 21 PRO 21 AAA ASP 22 n 22 ASP 22 AAA THR 23 n 23 THR 23 AAA ILE 24 n 24 ILE 24 AAA ILE 25 n 25 ILE 25 AAA ASN 26 n 26 ASN 26 AAA THR 27 n 27 THR 27 AAA SER 28 n 28 SER 28 AAA LYS 29 n 29 LYS 29 AAA GLU 30 n 30 GLU 30 AAA GLU 31 n 31 GLU 31 AAA ASN 32 n 32 ASN 32 AAA ASN 33 n 33 ASN 33 AAA SER 34 n 34 SER 34 AAA TYR 35 n 35 TYR 35 AAA TYR 36 n 36 TYR 36 AAA CYS 37 n 37 CYS 37 AAA ALA 38 n 38 ALA 38 AAA THR 39 n 39 THR 39 AAA ALA 40 n 40 ALA 40 AAA HIS 41 n 41 HIS 41 AAA LEU 42 n 42 LEU 42 AAA LEU 43 n 43 LEU 43 AAA ARG 44 n 44 ARG 44 AAA THR 45 n 45 THR 45 AAA ASP 46 n 46 ASP 46 AAA VAL 47 n 47 VAL 47 AAA CYS 48 n 48 CYS 48 AAA SER 49 n 49 SER 49 AAA LEU 50 n 50 LEU 50 AAA VAL 51 n 51 VAL 51 AAA ASN 52 n 52 ASN 52 AAA ARG 53 n 53 ARG 53 AAA VAL 54 n 54 VAL 54 AAA GLY 55 n 55 GLY 55 AAA ILE 56 n 56 ILE 56 AAA GLU 57 n 57 GLU 57 AAA PRO 58 n 58 PRO 58 AAA LEU 59 n 59 LEU 59 AAA LYS 60 n 60 LYS 60 AAA SER 61 n 61 SER 61 AAA GLY 62 n 62 GLY 62 AAA SER 63 n 63 SER 63 AAA ILE 64 n 64 ILE 64 AAA LEU 65 n 65 LEU 65 AAA SER 66 n 66 SER 66 AAA THR 67 n 67 THR 67 AAA LEU 68 n 68 LEU 68 AAA GLU 69 n 69 GLU 69 AAA GLU 70 n 70 GLU 70 AAA LEU 71 n 71 LEU 71 AAA TRP 72 n 72 TRP 72 AAA GLN 73 n 73 GLN 73 AAA ALA 74 n 74 ALA 74 AAA VAL 75 n 75 VAL 75 AAA GLY 76 n 76 GLY 76 AAA ILE 77 n 77 ILE 77 AAA ILE 78 n 78 ILE 78 AAA TYR 79 n 79 TYR 79 AAA ARG 80 n 80 ARG 80 AAA LEU 81 n 81 LEU 81 AAA TYR 82 n 82 TYR 82 AAA GLU 83 n 83 GLU 83 AAA TRP 84 n 84 TRP 84 AAA GLN 85 n 85 GLN 85 AAA HIS 86 n 86 HIS 86 AAA VAL 87 n 87 VAL 87 AAA SER 88 n 88 SER 88 AAA ASP 89 n 89 ASP 89 AAA ILE 90 n 90 ILE 90 AAA ASP 91 n 91 ASP 91 AAA THR 92 n 92 THR 92 AAA ASN 93 n 93 ASN 93 AAA PHE 94 n 94 PHE 94 AAA LYS 95 n 95 LYS 95 AAA LYS 96 n 96 LYS 96 AAA LEU 97 n 97 LEU 97 AAA PRO 98 n 98 PRO 98 AAA ASN 99 n 99 ASN 99 AAA ASN 100 n 100 ASN 100 AAA SER 101 n 101 SER 101 AAA ASP 102 n 102 ASP 102 AAA PHE 103 n 103 PHE 103 AAA GLY 104 n 104 GLY 104 AAA LEU 105 n 105 LEU 105 AAA VAL 106 n 106 VAL 106 AAA PHE 107 n 107 PHE 107 AAA SER 108 n 108 SER 108 AAA VAL 109 n 109 VAL 109 AAA LEU 110 n 110 LEU 110 AAA ASP 111 n 111 ASP 111 AAA CYS 112 n 112 CYS 112 AAA ASP 113 n 113 ASP 113 AAA ILE 114 n 114 ILE 114 AAA GLY 115 n 115 GLY 115 AAA TYR 116 n 116 TYR 116 AAA VAL 117 n 117 VAL 117 AAA ILE 118 n 118 ILE 118 AAA THR 119 n 119 THR 119 AAA GLY 120 n 120 GLY 120 AAA LYS 121 n 121 LYS 121 AAA LYS 122 n 122 LYS 122 AAA ASP 123 n 123 ASP 123 AAA SER 124 n 124 SER 124 AAA LYS 125 n 125 LYS 125 AAA GLY 126 n 126 GLY 126 AAA ASN 127 n 127 ASN 127 AAA ILE 128 n 128 ILE 128 AAA GLU 129 n 129 GLU 129 AAA LEU 130 n 130 LEU 130 AAA TYR 131 n 131 TYR 131 AAA ASP 132 n 132 ASP 132 AAA PRO 133 n 133 PRO 133 AAA LYS 134 n 134 LYS 134 AAA ASN 135 n 135 ASN 135 AAA SER 136 n 136 SER 136 AAA LEU 137 n 137 LEU 137 AAA LEU 138 n 138 LEU 138 AAA ILE 139 n 139 ILE 139 AAA GLU 140 n 140 GLU 140 AAA ASN 141 n 141 ASN 141 AAA ASP 142 n 142 ASP 142 AAA ASP 143 n 143 ASP 143 AAA ILE 144 n 144 ILE 144 AAA LYS 145 n 145 LYS 145 AAA LYS 146 n 146 LYS 146 AAA TYR 147 n 147 TYR 147 AAA LEU 148 n 148 LEU 148 AAA TYR 149 n 149 TYR 149 AAA ASP 150 n 150 ASP 150 AAA GLU 151 n 151 GLU 151 AAA ASN 152 n 152 ASN 152 AAA PHE 153 n 153 PHE 153 AAA HIS 154 n 154 HIS 154 AAA ARG 155 n 155 ARG 155 AAA PHE 156 n 156 PHE 156 AAA CYS 157 n 157 CYS 157 AAA ILE 158 n 158 ILE 158 AAA MET 159 n 159 MET 159 AAA LEU 160 n 160 LEU 160 AAA ILE 161 n 161 ILE 161 AAA ILE 162 n 162 ILE 162 AAA SER 163 n 163 SER 163 AAA LYS 164 n 164 LYS 164 AAA n 165 165 AAA n 166 166 AAA n 167 167 AAA n 168 168 AAA n 169 169 AAA n 170 170 AAA n 171 171 AAA n 172 172 AAA n 173 173 AAA n 174 174 AAA n 175 175 AAA n 176 176 AAA n 177 177 AAA n 178 178 AAA n 179 179 AAA n 180 180 AAA n 181 181 AAA n 182 182 AAA author_and_software_defined_assembly PISA 2 dimeric none 2270 -64 14430 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 BBB N ILE 78 A N ILE 78 BBB O ILE 162 A O ILE 162 BBB O PHE 156 A O PHE 156 BBB N GLN 85 A N GLN 85 BBB N ILE 78 A N ILE 78 BBB O ILE 162 A O ILE 162 BBB O ARG 155 A O ARG 155 BBB N SER 108 A N SER 108 BBB N PHE 107 A N PHE 107 BBB O TYR 116 A O TYR 116 BBB N THR 119 A N THR 119 BBB O TYR 131 A O TYR 131 BBB N LEU 130 A N LEU 130 BBB O ILE 139 A O ILE 139 AAA N ILE 78 B N ILE 78 AAA O ILE 162 B O ILE 162 AAA O MET 159 B O MET 159 AAA N GLY 104 B N GLY 104 AAA N PHE 107 B N PHE 107 AAA O TYR 116 B O TYR 116 AAA N THR 119 B N THR 119 AAA O TYR 131 B O TYR 131 AAA N LEU 130 B N LEU 130 AAA O ILE 139 B O ILE 139 1 BBB OG SER 66 A OG SER 66 1 Y 1 BBB CG LEU 110 A CG LEU 110 1 Y 1 BBB CD1 LEU 110 A CD1 LEU 110 1 Y 1 BBB CD2 LEU 110 A CD2 LEU 110 1 Y 1 BBB CG LYS 134 A CG LYS 134 1 Y 1 BBB CD LYS 134 A CD LYS 134 1 Y 1 BBB CE LYS 134 A CE LYS 134 1 Y 1 BBB NZ LYS 134 A NZ LYS 134 1 Y 1 AAA OG SER 66 B OG SER 66 1 Y 1 AAA CG LEU 110 B CG LEU 110 1 Y 1 AAA CD1 LEU 110 B CD1 LEU 110 1 Y 1 AAA CD2 LEU 110 B CD2 LEU 110 1 Y 1 AAA CG LYS 134 B CG LYS 134 1 Y 1 AAA CD LYS 134 B CD LYS 134 1 Y 1 AAA CE LYS 134 B CE LYS 134 1 Y 1 AAA NZ LYS 134 B NZ LYS 134 1 Y 1 BBB MET 1 A MET 1 1 Y 1 BBB PHE 2 A PHE 2 1 Y 1 BBB ILE 3 A ILE 3 1 Y 1 BBB LYS 4 A LYS 4 1 Y 1 BBB ASP 5 A ASP 5 1 Y 1 BBB ALA 6 A ALA 6 1 Y 1 BBB TYR 7 A TYR 7 1 Y 1 BBB ASN 8 A ASN 8 1 Y 1 BBB MET 9 A MET 9 1 Y 1 BBB ARG 10 A ARG 10 1 Y 1 BBB ALA 11 A ALA 11 1 Y 1 BBB LEU 12 A LEU 12 1 Y 1 BBB CYS 13 A CYS 13 1 Y 1 BBB THR 14 A THR 14 1 Y 1 BBB ALA 15 A ALA 15 1 Y 1 BBB LEU 16 A LEU 16 1 Y 1 BBB GLU 17 A GLU 17 1 Y 1 BBB GLN 18 A GLN 18 1 Y 1 BBB SER 19 A SER 19 1 Y 1 BBB ALA 20 A ALA 20 1 Y 1 BBB PRO 21 A PRO 21 1 Y 1 BBB ASP 22 A ASP 22 1 Y 1 BBB THR 23 A THR 23 1 Y 1 BBB ILE 24 A ILE 24 1 Y 1 BBB ILE 25 A ILE 25 1 Y 1 BBB ASN 26 A ASN 26 1 Y 1 BBB THR 27 A THR 27 1 Y 1 BBB SER 28 A SER 28 1 Y 1 BBB LYS 29 A LYS 29 1 Y 1 BBB LEU 167 A LEU 167 1 Y 1 BBB GLU 168 A GLU 168 1 Y 1 BBB GLU 169 A GLU 169 1 Y 1 BBB LEU 170 A LEU 170 1 Y 1 BBB SER 171 A SER 171 1 Y 1 BBB ARG 172 A ARG 172 1 Y 1 BBB GLU 173 A GLU 173 1 Y 1 BBB SER 174 A SER 174 1 Y 1 BBB CYS 175 A CYS 175 1 Y 1 BBB ASP 176 A ASP 176 1 Y 1 BBB GLN 177 A GLN 177 1 Y 1 BBB LYS 178 A LYS 178 1 Y 1 BBB CYS 179 A CYS 179 1 Y 1 BBB ILE 180 A ILE 180 1 Y 1 BBB MET 181 A MET 181 1 Y 1 BBB GLY 182 A GLY 182 1 Y 1 AAA MET 1 B MET 1 1 Y 1 AAA PHE 2 B PHE 2 1 Y 1 AAA ILE 3 B ILE 3 1 Y 1 AAA LYS 4 B LYS 4 1 Y 1 AAA ASP 5 B ASP 5 1 Y 1 AAA ALA 6 B ALA 6 1 Y 1 AAA TYR 7 B TYR 7 1 Y 1 AAA ASN 8 B ASN 8 1 Y 1 AAA MET 9 B MET 9 1 Y 1 AAA ARG 10 B ARG 10 1 Y 1 AAA ALA 11 B ALA 11 1 Y 1 AAA LEU 12 B LEU 12 1 Y 1 AAA CYS 13 B CYS 13 1 Y 1 AAA THR 14 B THR 14 1 Y 1 AAA ALA 15 B ALA 15 1 Y 1 AAA LEU 16 B LEU 16 1 Y 1 AAA GLU 17 B GLU 17 1 Y 1 AAA GLN 18 B GLN 18 1 Y 1 AAA SER 19 B SER 19 1 Y 1 AAA SER 165 B SER 165 1 Y 1 AAA GLU 166 B GLU 166 1 Y 1 AAA LEU 167 B LEU 167 1 Y 1 AAA GLU 168 B GLU 168 1 Y 1 AAA GLU 169 B GLU 169 1 Y 1 AAA LEU 170 B LEU 170 1 Y 1 AAA SER 171 B SER 171 1 Y 1 AAA ARG 172 B ARG 172 1 Y 1 AAA GLU 173 B GLU 173 1 Y 1 AAA SER 174 B SER 174 1 Y 1 AAA CYS 175 B CYS 175 1 Y 1 AAA ASP 176 B ASP 176 1 Y 1 AAA GLN 177 B GLN 177 1 Y 1 AAA LYS 178 B LYS 178 1 Y 1 AAA CYS 179 B CYS 179 1 Y 1 AAA ILE 180 B ILE 180 1 Y 1 AAA MET 181 B MET 181 1 Y 1 AAA GLY 182 B GLY 182 1 Y 1 AAA AAA HH H TYR GLU 36 57 1.09 1 BBB BBB O H ARG GLY 53 55 1.39 1 AAA AAA HH12 HH22 ARG ARG 44 44 1.33 1_555 6_645 1 BBB BBB O4 O4 SO4 SO4 203 203 1.75 1_555 6_555 1 BBB ASN 32 -86.21 39.91 1 BBB THR 45 -137.27 -158.06 1 BBB VAL 54 64.63 -48.43 1 BBB PRO 58 -69.69 -169.67 1 BBB ASP 111 -105.07 46.23 1 BBB ASN 141 -49.01 156.32 1 BBB ASP 142 82.21 -44.94 1 AAA ASN 26 67.94 -9.94 1 AAA THR 27 49.59 -164.72 1 AAA SER 28 -153.57 -153.96 1 AAA LYS 29 42.37 -105.19 1 AAA ASN 32 -91.36 40.74 1 AAA THR 45 -119.54 -160.34 1 AAA VAL 54 63.64 -48.71 1 AAA TRP 84 -38.98 124.98 1 AAA ASP 111 -110.18 50.08 1 AAA ASP 142 82.35 -11.66 66.686 4.934 0.000 -0.000 -1.697 0.000 -3.237 0.932 0.905 Hydrogens have been added in their riding positions 0.2670 0.2314 0.233 2.740 48.505 533 10327 10860 4.908 99.926 15.277 0.290 1 FREE R-VALUE MOLECULAR REPLACEMENT 0.927 0.351 0.800 0.800 1.200 AF-P27474-F1 MASK BULK SOLVENT 2.740 48.505 8 2287 17 0 2262 0.009 0.013 2337 0.001 0.017 2107 1.534 1.629 3174 1.509 1.581 4905 7.038 5.000 284 43.306 24.380 121 21.041 15.000 408 22.718 15.000 8 0.080 0.200 310 0.007 0.020 2593 0.002 0.020 467 0.205 0.200 516 0.213 0.200 2041 0.179 0.200 1160 0.083 0.200 1232 0.174 0.200 51 0.160 0.200 2 0.374 0.200 22 0.382 0.200 39 0.306 0.200 5 4.767 6.859 1136 4.731 6.859 1135 7.220 10.291 1420 7.220 10.293 1421 5.923 7.482 1196 5.888 7.464 1188 9.178 10.983 1751 9.036 10.935 1736 13.032 130.407 9492 13.031 130.409 9493 0.194 0.050 3963 0.389 0.371 0.372 2.811 33 749 782 0.405 0.507 20 100.0000 0.369 0.344 0.347 0.347 2.888 39 739 778 0.641 0.653 20 100.0000 0.344 0.310 0.310 0.310 2.971 42 687 729 0.826 0.775 20 100.0000 0.306 0.277 0.279 0.279 3.062 35 692 727 0.845 0.854 20 100.0000 0.265 0.367 0.249 0.255 3.162 41 663 704 0.809 0.887 20 100.0000 0.230 0.272 0.230 0.232 3.273 35 654 689 0.880 0.911 20 100.0000 0.214 0.224 0.203 0.205 3.396 37 619 656 0.927 0.930 20 100.0000 0.182 0.196 0.204 0.203 3.534 30 611 641 0.940 0.935 20 100.0000 0.183 0.299 0.221 0.225 3.690 27 575 602 0.919 0.930 20 100.0000 0.199 0.298 0.219 0.221 3.869 25 568 593 0.887 0.928 20 100.0000 0.201 0.209 0.208 0.208 4.077 21 532 553 0.950 0.944 20 100.0000 0.188 0.249 0.189 0.191 4.322 20 509 529 0.948 0.957 20 100.0000 0.175 0.160 0.168 0.168 4.618 27 481 508 0.968 0.962 20 100.0000 0.160 0.271 0.204 0.206 4.984 18 446 464 0.918 0.955 20 100.0000 0.197 0.249 0.216 0.217 5.454 19 420 439 0.937 0.952 20 100.0000 0.206 0.268 0.271 0.271 6.088 20 375 395 0.905 0.933 20 100.0000 0.257 0.267 0.268 0.268 7.012 30 332 362 0.914 0.924 20 100.0000 0.251 0.346 0.239 0.243 8.543 13 288 301 0.933 0.934 20 100.0000 0.237 0.264 0.198 0.203 11.898 18 228 248 0.935 0.958 20 99.1936 0.207 0.797 0.340 0.346 48.505 3 158 164 0.564 0.890 20 98.1707 0.352 2.740 48.510 8BRF 10860 0.998 0.188 0.053 0.195 1 11.800 142573 13.100 100.000 2.666 2.740 2.870 19028 1428 0.490 0.745 2.769 1 1.200 13.300 100.000 0.041 9.090 48.510 3923 340 0.999 0.012 0.042 1 41.600 11.500 98.900 refinement REFMAC 5.8.0258 data reduction XDS data scaling Aimless phasing MOLREP N YopQ apo from Yersinia enterocolitica 1 N N 1 N N 2 N N 3 N N 3 N N 2 N N 3 N N 4 N N 4 N N BBB ASN 33 A ASN 33 HELX_P BBB LEU 43 A LEU 43 1 AA1 11 BBB ASP 46 A ASP 46 HELX_P BBB ASN 52 A ASN 52 1 AA2 7 BBB LEU 59 A LEU 59 HELX_P BBB GLY 62 A GLY 62 5 AA3 4 BBB SER 63 A SER 63 HELX_P BBB GLY 76 A GLY 76 1 AA4 14 BBB ASP 89 A ASP 89 HELX_P BBB LYS 96 A LYS 96 1 AA5 8 BBB ASP 142 A ASP 142 HELX_P BBB GLU 151 A GLU 151 1 AA6 10 AAA ASN 33 B ASN 33 HELX_P AAA LEU 43 B LEU 43 1 AA7 11 AAA ASP 46 B ASP 46 HELX_P AAA ARG 53 B ARG 53 1 AA8 8 AAA LEU 59 B LEU 59 HELX_P AAA GLY 62 B GLY 62 5 AA9 4 AAA SER 63 B SER 63 HELX_P AAA GLY 76 B GLY 76 1 AB1 14 AAA ASP 89 B ASP 89 HELX_P AAA LYS 96 B LYS 96 1 AB2 8 AAA PRO 133 B PRO 133 HELX_P AAA SER 136 B SER 136 5 AB3 4 AAA ASP 143 B ASP 143 HELX_P AAA GLU 151 B GLU 151 1 AB4 9 disulf 2.096 BBB CYS 112 A SG CYS 112 1_555 BBB CYS 112 A SG CYS 112 7_555 disulf 2.151 AAA CYS 112 B SG CYS 112 1_555 AAA CYS 112 B SG CYS 112 8_554 TOXIN Type three secretion system substrate, effector, TOXIN Chains BBB AAA YOPQ_YEREN UNP 1 1 P27474 MFIKDAYNMRALCTALEQSAPDTIINTSKEENNSYYCATAHLLRTDVCSLVNRVGIEPLKSGSILSTLEELWQAVGIIYR LYEWQHVSDIDTNFKKLPNNSDFGLVFSVLDCDIGYVITGKKDSKGNIELYDPKNSLLIENDDIKKYLYDENFHRFCIML IISKSELEELSRESCDQKCIMG 1 182 8BRF 1 182 P27474 BBB 1 1 182 1 182 8BRF 1 182 P27474 AAA 1 1 182 3 6 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel BBB ILE 78 A ILE 78 BBB LEU 81 A LEU 81 BBB PHE 153 A PHE 153 BBB SER 163 A SER 163 BBB GLN 85 A GLN 85 BBB HIS 86 A HIS 86 BBB ILE 78 A ILE 78 BBB LEU 81 A LEU 81 BBB PHE 153 A PHE 153 BBB SER 163 A SER 163 BBB SER 101 A SER 101 BBB VAL 109 A VAL 109 BBB TYR 116 A TYR 116 BBB LYS 122 A LYS 122 BBB ILE 128 A ILE 128 BBB ASP 132 A ASP 132 BBB LEU 137 A LEU 137 BBB GLU 140 A GLU 140 AAA ILE 78 B ILE 78 AAA HIS 86 B HIS 86 AAA PHE 153 B PHE 153 AAA SER 163 B SER 163 AAA SER 101 B SER 101 AAA VAL 109 B VAL 109 AAA TYR 116 B TYR 116 AAA LYS 122 B LYS 122 AAA ILE 128 B ILE 128 AAA ASP 132 B ASP 132 AAA LEU 137 B LEU 137 AAA GLU 140 B GLU 140 24 I 21 21 21