0.022591 0.000000 0.000000 0.000000 0.017418 0.000000 0.000000 0.000000 0.010703 0.00000 0.00000 0.00000 3.54356 2.42580 25.62398 1.50364 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.01032 2.96436 19.97189 1.75589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.49882 3.47563 15.80542 1.70748 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.55732 6.39887 1.23737 29.19336 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. Bera, A.K. Adebomi, V. Srinivas, P. Kang, A. Bhardwaj, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 44.265 57.412 93.432 237442.683 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N O N 21 N N N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N N N 32 S C N 33 N C N 34 N O N 35 N C N 36 N C N 37 N O N 38 N O N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 R C N 49 N C N 50 N O N 51 N C N 52 N S N 53 N O N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N N N 62 S C N 63 N C N 64 N O N 65 N C N 66 N C N 67 N C N 68 N O N 69 N N N 70 N O N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 S C N 83 N C N 84 N O N 85 N C N 86 N C N 87 N C N 88 N O N 89 N O N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N N N 101 N C N 102 N C N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N H N 112 N H N 113 N N N 114 S C N 115 N C N 116 N O N 117 S C N 118 N C N 119 N C N 120 N C N 121 N O N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N N N 136 S C N 137 N C N 138 N O N 139 N C N 140 N C N 141 N C N 142 N C N 143 N O N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N N N 158 S C N 159 N C N 160 N O N 161 N C N 162 N C N 163 N C N 164 N C N 165 N N N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N N N 183 S C N 184 N C N 185 N O N 186 N C N 187 N C N 188 N S N 189 N C N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C Y 207 N C Y 208 N C Y 209 N C Y 210 N C Y 211 N C Y 212 N C N 213 N O N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N N N 226 S C N 227 N C N 228 N O N 229 N C N 230 N C N 231 N C N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N N N 243 S C N 244 N C N 245 N O N 246 N C N 247 N O N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 R C N 261 N O N 262 N C N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C Y 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C Y 283 N C N 284 N O N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N N N 298 S C N 299 N C N 300 N O N 301 N C N 302 N C N 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing Y 201 N doub Y 202 N sing Y 203 N sing N 204 N sing Y 205 N doub N 206 N sing Y 207 N doub N 208 N sing Y 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing Y 270 N doub Y 271 N sing Y 272 N sing N 273 N sing Y 274 N doub N 275 N sing Y 276 N doub N 277 N sing Y 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing US Biorxiv 2692-8205 10.64898/2026.06.22.733822 42395444 Orally available designed miniproteins inhibit enterotoxigenic Bacteroides fragilis pathology by blocking toxin receptor binding. 2026 0000-0001-7796-8827 0000-0002-4573-5102 0009-0002-9695-664X 0000-0002-4183-3899 0000-0002-9827-4098 0009-0000-9720-519X 0000-0001-9797-6939 0009-0001-3348-4254 0000-0001-9473-2912 0000-0001-5487-0499 0000-0002-6170-4306 0000-0002-5417-4861 10.2210/pdb36lx/pdb pdb_000036lx 100 1 N Horizontal secondary source 2 stage focusing PIXEL 2025-12-02 DECTRIS EIGER X 9M Horizontal double crystal monochromator (DCM) SINGLE WAVELENGTH M x-ray 1 0.91992 1.0 17-ID-1 NSLS-II 0.91992 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 7678.713 MB03-ds 4 man polymer 18.015 water 43 nat water no no SGGSEECKKKIEEMLEEAKKKDPALYEYLTKSLDILEKMGASCEDKLFNLEVVSQVYLNTENLYFQG SGGSEECKKKIEEMLEEAKKKDPALYEYLTKSLDILEKMGASCEDKLFNLEVVSQVYLNTENLYFQG A,B,C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 67 32630 synthetic construct 562 Escherichia coli Biological sequence 1 1.93 36.36 VAPOR DIFFUSION, SITTING DROP 24 %(w/v) PEG 1500 and 20% (w/v) Glycerol 293 repository Initial release 1 0 2026-07-15 United States Defense Advanced Research Projects Agency (DARPA) HR0011 21 2 0012 gauravb@uw.edu 0000-0001-6554-2335 Gaurav Bhardwaj principal investigator/group leader N RCSB Y RCSB 2026-06-17 REL REL HOH water Y de novo design model Other in silico model A CYS 4 Disulfide bridge SG A CYS 7 A CYS 40 SG A CYS 43 1_555 1_555 None B CYS 4 Disulfide bridge SG B CYS 7 B CYS 40 SG B CYS 43 1_555 1_555 None C CYS 4 Disulfide bridge SG C CYS 7 C CYS 40 SG C CYS 43 1_555 1_555 None D CYS 4 Disulfide bridge SG D CYS 7 D CYS 40 SG D CYS 43 1_555 1_555 None HOH 12 2 HOH HOH 101 A HOH 1 2 HOH HOH 102 A HOH 40 2 HOH HOH 103 A HOH 6 2 HOH HOH 104 A HOH 41 2 HOH HOH 105 A HOH 28 2 HOH HOH 101 B HOH 31 2 HOH HOH 102 B HOH 43 2 HOH HOH 103 B HOH 17 2 HOH HOH 104 B HOH 29 2 HOH HOH 105 B HOH 25 2 HOH HOH 106 B HOH 39 2 HOH HOH 107 B HOH 35 2 HOH HOH 108 B HOH 5 2 HOH HOH 109 B HOH 27 2 HOH HOH 110 B HOH 18 2 HOH HOH 111 B HOH 23 2 HOH HOH 112 B HOH 8 2 HOH HOH 113 B HOH 37 2 HOH HOH 114 B HOH 16 2 HOH HOH 115 B HOH 30 2 HOH HOH 116 B HOH 38 2 HOH HOH 117 B HOH 11 2 HOH HOH 118 B HOH 42 2 HOH HOH 119 B HOH 9 2 HOH HOH 101 C HOH 2 2 HOH HOH 102 C HOH 4 2 HOH HOH 103 C HOH 26 2 HOH HOH 104 C HOH 19 2 HOH HOH 105 C HOH 20 2 HOH HOH 106 C HOH 21 2 HOH HOH 107 C HOH 13 2 HOH HOH 108 C HOH 34 2 HOH HOH 109 C HOH 14 2 HOH HOH 110 C HOH 33 2 HOH HOH 111 C HOH 10 2 HOH HOH 112 C HOH 32 2 HOH HOH 113 C HOH 24 2 HOH HOH 114 C HOH 36 2 HOH HOH 115 C HOH 15 2 HOH HOH 101 D HOH 3 2 HOH HOH 102 D HOH 22 2 HOH HOH 103 D HOH 7 2 HOH HOH 104 D n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A GLU 2 n 5 GLU 2 A GLU 3 n 6 GLU 3 A CYS 4 n 7 CYS 4 A LYS 5 n 8 LYS 5 A LYS 6 n 9 LYS 6 A LYS 7 n 10 LYS 7 A ILE 8 n 11 ILE 8 A GLU 9 n 12 GLU 9 A GLU 10 n 13 GLU 10 A MET 11 n 14 MET 11 A LEU 12 n 15 LEU 12 A GLU 13 n 16 GLU 13 A GLU 14 n 17 GLU 14 A ALA 15 n 18 ALA 15 A LYS 16 n 19 LYS 16 A LYS 17 n 20 LYS 17 A LYS 18 n 21 LYS 18 A ASP 19 n 22 ASP 19 A PRO 20 n 23 PRO 20 A ALA 21 n 24 ALA 21 A LEU 22 n 25 LEU 22 A TYR 23 n 26 TYR 23 A GLU 24 n 27 GLU 24 A TYR 25 n 28 TYR 25 A LEU 26 n 29 LEU 26 A THR 27 n 30 THR 27 A LYS 28 n 31 LYS 28 A SER 29 n 32 SER 29 A LEU 30 n 33 LEU 30 A ASP 31 n 34 ASP 31 A ILE 32 n 35 ILE 32 A LEU 33 n 36 LEU 33 A GLU 34 n 37 GLU 34 A LYS 35 n 38 LYS 35 A MET 36 n 39 MET 36 A GLY 37 n 40 GLY 37 A ALA 38 n 41 ALA 38 A SER 39 n 42 SER 39 A CYS 40 n 43 CYS 40 A GLU 41 n 44 GLU 41 A ASP 42 n 45 ASP 42 A LYS 43 n 46 LYS 43 A LEU 44 n 47 LEU 44 A PHE 45 n 48 PHE 45 A ASN 46 n 49 ASN 46 A LEU 47 n 50 LEU 47 A GLU 48 n 51 GLU 48 A VAL 49 n 52 VAL 49 A VAL 50 n 53 VAL 50 A SER 51 n 54 SER 51 A GLN 52 n 55 GLN 52 A VAL 53 n 56 VAL 53 A TYR 54 n 57 TYR 54 A LEU 55 n 58 LEU 55 A ASN 56 n 59 ASN 56 A THR 57 n 60 THR 57 A n 61 58 A n 62 59 A n 63 60 A n 64 61 A n 65 62 A n 66 63 A n 67 64 A SER -2 n 1 SER -2 B GLY -1 n 2 GLY -1 B GLY 0 n 3 GLY 0 B SER 1 n 4 SER 1 B GLU 2 n 5 GLU 2 B GLU 3 n 6 GLU 3 B CYS 4 n 7 CYS 4 B LYS 5 n 8 LYS 5 B LYS 6 n 9 LYS 6 B LYS 7 n 10 LYS 7 B ILE 8 n 11 ILE 8 B GLU 9 n 12 GLU 9 B GLU 10 n 13 GLU 10 B MET 11 n 14 MET 11 B LEU 12 n 15 LEU 12 B GLU 13 n 16 GLU 13 B GLU 14 n 17 GLU 14 B ALA 15 n 18 ALA 15 B LYS 16 n 19 LYS 16 B LYS 17 n 20 LYS 17 B LYS 18 n 21 LYS 18 B ASP 19 n 22 ASP 19 B PRO 20 n 23 PRO 20 B ALA 21 n 24 ALA 21 B LEU 22 n 25 LEU 22 B TYR 23 n 26 TYR 23 B GLU 24 n 27 GLU 24 B TYR 25 n 28 TYR 25 B LEU 26 n 29 LEU 26 B THR 27 n 30 THR 27 B LYS 28 n 31 LYS 28 B SER 29 n 32 SER 29 B LEU 30 n 33 LEU 30 B ASP 31 n 34 ASP 31 B ILE 32 n 35 ILE 32 B LEU 33 n 36 LEU 33 B GLU 34 n 37 GLU 34 B LYS 35 n 38 LYS 35 B MET 36 n 39 MET 36 B GLY 37 n 40 GLY 37 B ALA 38 n 41 ALA 38 B SER 39 n 42 SER 39 B CYS 40 n 43 CYS 40 B GLU 41 n 44 GLU 41 B ASP 42 n 45 ASP 42 B LYS 43 n 46 LYS 43 B LEU 44 n 47 LEU 44 B PHE 45 n 48 PHE 45 B ASN 46 n 49 ASN 46 B LEU 47 n 50 LEU 47 B GLU 48 n 51 GLU 48 B VAL 49 n 52 VAL 49 B VAL 50 n 53 VAL 50 B SER 51 n 54 SER 51 B GLN 52 n 55 GLN 52 B VAL 53 n 56 VAL 53 B TYR 54 n 57 TYR 54 B LEU 55 n 58 LEU 55 B ASN 56 n 59 ASN 56 B THR 57 n 60 THR 57 B n 61 58 B n 62 59 B n 63 60 B n 64 61 B n 65 62 B n 66 63 B n 67 64 B SER -2 n 1 SER -2 C GLY -1 n 2 GLY -1 C GLY 0 n 3 GLY 0 C SER 1 n 4 SER 1 C GLU 2 n 5 GLU 2 C GLU 3 n 6 GLU 3 C CYS 4 n 7 CYS 4 C LYS 5 n 8 LYS 5 C LYS 6 n 9 LYS 6 C LYS 7 n 10 LYS 7 C ILE 8 n 11 ILE 8 C GLU 9 n 12 GLU 9 C GLU 10 n 13 GLU 10 C MET 11 n 14 MET 11 C LEU 12 n 15 LEU 12 C GLU 13 n 16 GLU 13 C GLU 14 n 17 GLU 14 C ALA 15 n 18 ALA 15 C LYS 16 n 19 LYS 16 C LYS 17 n 20 LYS 17 C LYS 18 n 21 LYS 18 C ASP 19 n 22 ASP 19 C PRO 20 n 23 PRO 20 C ALA 21 n 24 ALA 21 C LEU 22 n 25 LEU 22 C TYR 23 n 26 TYR 23 C GLU 24 n 27 GLU 24 C TYR 25 n 28 TYR 25 C LEU 26 n 29 LEU 26 C THR 27 n 30 THR 27 C LYS 28 n 31 LYS 28 C SER 29 n 32 SER 29 C LEU 30 n 33 LEU 30 C ASP 31 n 34 ASP 31 C ILE 32 n 35 ILE 32 C LEU 33 n 36 LEU 33 C GLU 34 n 37 GLU 34 C LYS 35 n 38 LYS 35 C MET 36 n 39 MET 36 C GLY 37 n 40 GLY 37 C ALA 38 n 41 ALA 38 C SER 39 n 42 SER 39 C CYS 40 n 43 CYS 40 C GLU 41 n 44 GLU 41 C ASP 42 n 45 ASP 42 C LYS 43 n 46 LYS 43 C LEU 44 n 47 LEU 44 C PHE 45 n 48 PHE 45 C ASN 46 n 49 ASN 46 C LEU 47 n 50 LEU 47 C GLU 48 n 51 GLU 48 C VAL 49 n 52 VAL 49 C VAL 50 n 53 VAL 50 C SER 51 n 54 SER 51 C GLN 52 n 55 GLN 52 C VAL 53 n 56 VAL 53 C TYR 54 n 57 TYR 54 C LEU 55 n 58 LEU 55 C ASN 56 n 59 ASN 56 C THR 57 n 60 THR 57 C n 61 58 C n 62 59 C n 63 60 C n 64 61 C n 65 62 C n 66 63 C n 67 64 C n 1 -2 D n 2 -1 D n 3 0 D SER 1 n 4 SER 1 D GLU 2 n 5 GLU 2 D GLU 3 n 6 GLU 3 D CYS 4 n 7 CYS 4 D LYS 5 n 8 LYS 5 D LYS 6 n 9 LYS 6 D LYS 7 n 10 LYS 7 D ILE 8 n 11 ILE 8 D GLU 9 n 12 GLU 9 D GLU 10 n 13 GLU 10 D MET 11 n 14 MET 11 D LEU 12 n 15 LEU 12 D GLU 13 n 16 GLU 13 D GLU 14 n 17 GLU 14 D ALA 15 n 18 ALA 15 D LYS 16 n 19 LYS 16 D LYS 17 n 20 LYS 17 D LYS 18 n 21 LYS 18 D ASP 19 n 22 ASP 19 D PRO 20 n 23 PRO 20 D ALA 21 n 24 ALA 21 D LEU 22 n 25 LEU 22 D TYR 23 n 26 TYR 23 D GLU 24 n 27 GLU 24 D TYR 25 n 28 TYR 25 D LEU 26 n 29 LEU 26 D THR 27 n 30 THR 27 D LYS 28 n 31 LYS 28 D SER 29 n 32 SER 29 D LEU 30 n 33 LEU 30 D ASP 31 n 34 ASP 31 D ILE 32 n 35 ILE 32 D LEU 33 n 36 LEU 33 D GLU 34 n 37 GLU 34 D LYS 35 n 38 LYS 35 D MET 36 n 39 MET 36 D GLY 37 n 40 GLY 37 D ALA 38 n 41 ALA 38 D SER 39 n 42 SER 39 D CYS 40 n 43 CYS 40 D GLU 41 n 44 GLU 41 D ASP 42 n 45 ASP 42 D LYS 43 n 46 LYS 43 D LEU 44 n 47 LEU 44 D PHE 45 n 48 PHE 45 D ASN 46 n 49 ASN 46 D LEU 47 n 50 LEU 47 D GLU 48 n 51 GLU 48 D VAL 49 n 52 VAL 49 D VAL 50 n 53 VAL 50 D SER 51 n 54 SER 51 D GLN 52 n 55 GLN 52 D VAL 53 n 56 VAL 53 D TYR 54 n 57 TYR 54 D LEU 55 n 58 LEU 55 D ASN 56 n 59 ASN 56 D THR 57 n 60 THR 57 D n 61 58 D n 62 59 D n 63 60 D n 64 61 D n 65 62 D n 66 63 D n 67 64 D author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric none 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A SER -2 A SER 1 1 Y 1 A GLY -1 A GLY 2 1 Y 1 A GLY 0 A GLY 3 1 Y 1 A SER 1 A SER 4 1 Y 1 A GLU 58 A GLU 61 1 Y 1 A ASN 59 A ASN 62 1 Y 1 A LEU 60 A LEU 63 1 Y 1 A TYR 61 A TYR 64 1 Y 1 A PHE 62 A PHE 65 1 Y 1 A GLN 63 A GLN 66 1 Y 1 A GLY 64 A GLY 67 1 Y 1 B GLU 58 B GLU 61 1 Y 1 B ASN 59 B ASN 62 1 Y 1 B LEU 60 B LEU 63 1 Y 1 B TYR 61 B TYR 64 1 Y 1 B PHE 62 B PHE 65 1 Y 1 B GLN 63 B GLN 66 1 Y 1 B GLY 64 B GLY 67 1 Y 1 C GLU 58 C GLU 61 1 Y 1 C ASN 59 C ASN 62 1 Y 1 C LEU 60 C LEU 63 1 Y 1 C TYR 61 C TYR 64 1 Y 1 C PHE 62 C PHE 65 1 Y 1 C GLN 63 C GLN 66 1 Y 1 C GLY 64 C GLY 67 1 Y 1 D SER -2 D SER 1 1 Y 1 D GLY -1 D GLY 2 1 Y 1 D GLY 0 D GLY 3 1 Y 1 D GLU 58 D GLU 61 1 Y 1 D ASN 59 D ASN 62 1 Y 1 D LEU 60 D LEU 63 1 Y 1 D TYR 61 D TYR 64 1 Y 1 D PHE 62 D PHE 65 1 Y 1 D GLN 63 D GLN 66 1 Y 1 D GLY 64 D GLY 67 1 Y 1 C LYS 18 -128.19 -50.73 34.91 0.2882 0.2534 0.2568 2.10 40.00 1408 12669 14077 10.00 97.23 0.2874 1 FREE R-VALUE 1.34 MOLECULAR REPLACEMENT 30.0603 0.9000 1.1000 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 2.10 40.00 43 1905 0 0 1862 0.0028 1898 0.4764 2535 0.0309 288 0.0022 318 20.6051 765 0.3560 0.3122 2.18 127 1146 90.16 0.3170 0.2806 2.26 134 1197 93.73 0.2987 0.2722 2.37 137 1246 96.92 0.2907 0.2648 2.49 140 1263 98.04 0.3244 0.2675 2.65 140 1257 99.08 0.3075 0.2634 2.85 142 1283 99.23 0.3492 0.2735 3.14 144 1295 98.97 0.2807 0.2491 3.59 144 1290 98.49 0.2624 0.2226 4.52 146 1303 98.44 0.2543 0.2464 40.00 154 1389 98.91 30.80 2.1 40 36LX 14230 0.995 0.135 0.084 1 7.9 8 98. 0.945 2.10 2.16 1.6 1036 0.719 0.414 1 5.1 90.3 refinement PHENIX 1.21.2_5419 data reduction autoPROC data scaling Aimless phasing PHASER 19 orthorhombic P 21 21 21 P 2ac 2ab x,y,z x+1/2,-y+1/2,-z -x,y+1/2,-z+1/2 -x+1/2,-y,z+1/2 N Crystal Structure of mini-binder MB03-ds 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N A GLU 2 A GLU 5 HELX_P A ASP 19 A ASP 22 1 AA1 18 A ASP 19 A ASP 22 HELX_P A GLY 37 A GLY 40 1 AA2 19 A SER 39 A SER 42 HELX_P A ASN 56 A ASN 59 1 AA3 18 B GLY -1 B GLY 2 HELX_P B ASP 19 B ASP 22 1 AA4 21 B ASP 19 B ASP 22 HELX_P B GLY 37 B GLY 40 1 AA5 19 B SER 39 B SER 42 HELX_P B THR 57 B THR 60 1 AA6 19 C GLY -1 C GLY 2 HELX_P C ASP 19 C ASP 22 1 AA7 21 C ASP 19 C ASP 22 HELX_P C GLY 37 C GLY 40 1 AA8 19 C SER 39 C SER 42 HELX_P C THR 57 C THR 60 1 AA9 19 D GLU 2 D GLU 5 HELX_P D ASP 19 D ASP 22 1 AB1 18 D ASP 19 D ASP 22 HELX_P D GLY 37 D GLY 40 1 AB2 19 D SER 39 D SER 42 HELX_P D THR 57 D THR 60 1 AB3 19 disulf 2.033 A CYS 4 A SG CYS 7 1_555 A CYS 40 A SG CYS 43 1_555 disulf 2.035 B CYS 4 B SG CYS 7 1_555 B CYS 40 B SG CYS 43 1_555 disulf 2.035 C CYS 4 C SG CYS 7 1_555 C CYS 40 C SG CYS 43 1_555 disulf 2.031 D CYS 4 D SG CYS 7 1_555 D CYS 40 D SG CYS 43 1_555 APOPTOSIS De novo design, deep learning, minibinder, Bacteroides fragilis toxin, receptor, pathology, APOPTOSIS 36LX PDB 1 1 36LX -2 64 36LX -2 64 36LX A 1 1 67 -2 64 36LX -2 64 36LX B 1 1 67 -2 64 36LX -2 64 36LX C 1 1 67 -2 64 36LX -2 64 36LX D 1 1 67 19 P 21 21 21 P 2ac 2ab