0.021598 0.000000 0.000000 0.000000 0.021087 0.000000 0.000000 0.000000 0.011820 0.00000 0.00000 0.00000 25.79822 9.11301 1.35700 25.34896 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 3.54356 2.42580 25.62398 1.50364 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.41153 2.53737 2.59044 63.03566 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.01032 2.96436 19.97189 1.75589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.49882 3.47563 15.80542 1.70748 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.51135 5.44231 1.42069 35.72801 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0009-0003-6281-4798 Essex, J. 0000-0003-4131-1203 Szostak, J.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 46.300 47.423 84.601 185757.138 C10 H14 N5 O8 P 363.221 L-GUANOSINE-5'-MONOPHOSPHATE L-RNA linking C9 H12 Br N2 O9 P 403.077 n 5-BROMO-URIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O7 P 347.221 n 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE non-polymer C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C11 H16 N3 O8 P 349.234 [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE RNA linking C11 H14 N5 O8 P 375.231 n [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE RNA linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 S C N 8 N O N 9 R C N 10 N O N 11 S C N 12 N O N 13 S C Y 14 N N Y 15 N C Y 16 N N N 17 N C N 18 N O Y 19 N C N 20 N N N 21 N C N 22 N N N 23 N N Y 24 N C N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N P N 40 N O N 41 N O N 42 N O N 43 N O N 44 N C N 45 R C N 46 N O N 47 S C N 48 N O N 49 R C N 50 N O N 51 R C N 52 N N N 53 N C N 54 N O N 55 N N N 56 N C N 57 N O N 58 N C N 59 N C N 60 N BR N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 R C N 121 N O N 122 R C N 123 N N N 124 N C N 125 N O N 126 N N N 127 N C N 128 N N N 129 N C N 130 N C N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N P N 146 N O N 147 N O N 148 N O N 149 N O N 150 N C N 151 R C N 152 N O N 153 S C N 154 N O N 155 N C N 156 R C Y 157 N N Y 158 N C Y 159 N N Y 160 N C N 161 N C N 162 N O N 163 N N N 164 N C N 165 N N N 166 N N Y 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N P N 184 N O N 185 N O N 186 N O N 187 N C N 188 R C N 189 N O N 190 S C N 191 N O N 192 R C N 193 N O N 194 R C Y 195 N N Y 196 N C Y 197 N N Y 198 N C N 199 N C N 200 N O N 201 N N N 202 N C N 203 N N N 204 N N Y 205 N C N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N O N 221 N H N 222 N H N 223 N O N 224 N C N 225 R C N 226 N O N 227 R C N 228 N N N 229 N C N 230 N C N 231 N C N 232 N C N 233 N N N 234 N N N 235 N C N 236 N O N 237 S C N 238 R C N 239 N O N 240 N O N 241 N C N 242 N P N 243 N O N 244 N O N 245 N O N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N P N 263 N O N 264 N O N 265 N C N 266 S C N 267 N C Y 268 N N Y 269 N C Y 270 N C Y 271 N N Y 272 N C N 273 N C N 274 R C N 275 N O N 276 R C N 277 R C N 278 N C N 279 N N N 280 N O N 281 N O N 282 N N N 283 N N N 284 N O N 285 N O N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N MG N 302 N O N 303 N P N 304 N O N 305 N O N 306 N O N 307 N C N 308 R C N 309 N O N 310 S C N 311 N O N 312 R C N 313 N O N 314 R C N 315 N N N 316 N C N 317 N O N 318 N N N 319 N C N 320 N O N 321 N C N 322 N C N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing N 30 N doub N 31 N sing N 32 N sing Y 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N doub N 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing Y 105 N sing Y 106 N doub N 107 N sing Y 108 N doub N 109 N sing N 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing Y 174 N sing Y 175 N sing Y 176 N doub N 177 N sing Y 178 N sing N 179 N sing Y 180 N doub N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing Y 214 N sing Y 215 N sing Y 216 N doub N 217 N sing Y 218 N sing N 219 N sing Y 220 N doub N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N sing N 291 N sing Y 292 N doub N 293 N sing Y 294 N doub N 295 N sing Y 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N doub N 348 N sing N 349 N sing To Be Published 0353 Effects of Chemically Activated L-Nucleotides on Nonenzymatic RNA Copying 0009-0003-6281-4798 0000-0001-9094-9882 0000-0001-8799-3444 0000-0003-4131-1203 10.2210/pdb36le/pdb pdb_000036le 100 1 N PIXEL 2025-12-20 DECTRIS EIGER X 16M Double crystal cryo-cooled Si(111) SINGLE WAVELENGTH M x-ray 1 0.91165 1.0 23-ID-B APS 0.91165 SYNCHROTRON APS BEAMLINE 23-ID-B 4591.700 RNA (16-mer) 4 syn polymer 363.221 L-GUANOSINE-5'-MONOPHOSPHATE 4 syn non-polymer 347.221 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE 8 syn non-polymer 24.305 MAGNESIUM ION 3 syn non-polymer 18.015 water 45 nat water no yes (LCC)(LCC)(LCC)(LCG)ACU(5BU)AAGUCG NNNGACUUAAGUCG A,B,C,D polyribonucleotide n n n n n n n n n n n n n n 1 2.53 51.35 VAPOR DIFFUSION, SITTING DROP 6.5 0.2 M Magnesium acetate tetrahydrate, 0.1 M Sodium cacodylate trihydrate pH 6.5, 20% w/v Polyethylene glycol 8,000 291 -5.678 1 19 A 4 B 13 -0.725 A_LCG4:C13_B 1 -13.834 -0.182 0.186 -0.159 -1.660 1 20 A 5 B 12 0.505 A_A5:U12_B 2 -13.408 0.144 0.055 -0.089 5.341 1 19 A 6 B 11 3.976 A_C6:G11_B 3 -17.061 0.506 -0.017 -0.069 2.908 1 20 A 7 B 10 3.713 A_U7:A10_B 4 -12.068 -0.008 0.174 -0.033 3.357 1 20 A 8 B 9 2.784 A_5BU8:A9_B 5 -11.949 -0.067 -0.057 -0.076 -3.373 1 20 A 9 B 8 1.724 A_A9:5BU8_B 6 -13.655 0.120 0.105 -0.147 1.171 1 20 A 10 B 7 1.489 A_A10:U7_B 7 -10.592 -0.209 0.357 -0.108 7.256 1 19 A 11 B 6 0.013 A_G11:C6_B 8 -7.387 -0.333 0.284 -0.130 7.090 1 20 A 12 B 5 4.480 A_U12:A5_B 9 -16.842 -0.010 0.063 -0.050 2.525 1 19 A 13 B 4 1.117 A_C13:LCG4_B 10 -12.665 0.119 -0.039 -0.240 -3.487 1 19 C 4 D 13 -0.356 C_LCG4:C13_D 11 -10.355 -0.360 0.204 -0.094 -0.269 1 20 C 5 D 12 -0.130 C_A5:U12_D 12 -12.760 0.256 -0.087 -0.123 4.163 1 19 C 6 D 11 1.306 C_C6:G11_D 13 -15.460 0.330 -0.078 -0.112 -1.303 1 20 C 7 D 10 3.375 C_U7:A10_D 14 -7.055 -0.232 0.108 -0.118 4.979 1 20 C 8 D 9 0.738 C_5BU8:A9_D 15 -8.011 -0.205 -0.237 -0.110 -0.734 1 20 C 9 D 8 0.898 C_A9:5BU8_D 16 -11.603 0.100 -0.140 -0.202 3.885 1 20 C 10 D 7 3.035 C_A10:U7_D 17 -9.817 0.076 0.230 -0.071 6.360 1 19 C 11 D 6 -1.801 C_G11:C6_D 18 -5.056 -0.242 0.085 -0.115 9.725 1 20 C 12 D 5 3.453 C_U12:A5_D 19 -10.704 0.082 -0.143 -0.095 22.544 1 19 C 13 D 4 -0.279 C_C13:LCG4_D 20 -6.731 0.101 -0.719 -0.093 2.949 32.241 A A 4 5 5.599 B B 13 12 3.123 3.104 -0.165 -1.723 AA_LCG4A5:U12C13_BB 1 -0.279 0.504 32.094 -3.617 0.251 2.925 31.528 A A 5 6 8.894 B B 12 11 3.135 4.811 0.399 -1.305 AA_A5C6:G11U12_BB 2 1.985 -3.670 31.107 -3.237 -0.390 2.442 28.798 A A 6 7 18.493 B B 11 10 3.215 9.048 0.569 -1.993 AA_C6U7:A10G11_BB 3 -0.113 0.231 27.368 -5.805 -1.166 2.356 27.981 A A 7 8 21.052 B B 10 9 3.238 9.964 -1.063 -1.954 AA_U75BU8:A9A10_BB 4 -0.160 0.338 26.180 -6.132 2.165 2.442 35.216 A A 8 9 24.831 B B 9 8 3.285 14.596 -0.071 -1.398 AA_5BU8A9:5BU8A9_BB 5 -0.621 1.056 32.131 -4.306 0.033 2.484 32.140 A A 9 10 14.616 B B 8 7 3.047 8.008 0.372 -1.849 AA_A9A10:U75BU8_BB 6 -1.648 3.008 31.110 -4.572 -0.926 2.471 28.711 A A 10 11 17.272 B B 7 6 3.009 8.439 -0.578 -1.514 AA_A10G11:C6U7_BB 7 -1.508 3.086 27.427 -4.682 0.875 2.797 35.072 A A 11 12 13.834 B B 6 5 3.193 8.260 0.553 -1.455 AA_G11U12:A5C6_BB 8 1.552 -2.599 34.080 -3.567 -0.702 2.644 33.088 A A 12 13 15.882 B B 5 4 3.252 8.938 -0.241 -1.870 AA_U12C13:LCG4A5_BB 9 0.120 -0.214 31.890 -4.670 0.442 3.224 32.534 C C 4 5 0.922 D D 13 12 3.273 0.516 -0.209 -1.965 CC_LCG4A5:U12C13_DD 10 1.961 -3.502 32.472 -3.597 0.714 2.738 29.832 C C 5 6 11.450 D D 12 11 3.109 5.856 0.288 -1.675 CC_A5C6:G11U12_DD 11 1.190 -2.327 29.240 -4.356 -0.336 2.212 29.154 C C 6 7 26.181 D D 11 10 3.380 12.716 -0.586 -2.067 CC_C6U7:A10G11_DD 12 -3.645 7.505 26.038 -6.620 0.445 2.524 32.108 C C 7 8 19.542 D D 10 9 3.202 10.613 -0.703 -1.484 CC_U75BU8:A9A10_DD 13 1.202 -2.213 30.323 -4.400 1.466 2.459 35.407 C C 8 9 26.104 D D 9 8 3.358 15.377 0.079 -1.375 CC_5BU8A9:5BU8A9_DD 14 -0.824 1.398 31.980 -4.384 -0.244 2.504 33.355 C C 9 10 14.985 D D 8 7 3.122 8.508 0.721 -1.944 CC_A9A10:U75BU8_DD 15 -1.603 2.823 32.243 -4.624 -1.490 2.570 26.643 C C 10 11 17.999 D D 7 6 3.241 8.165 -0.693 -1.739 CC_A10G11:C6U7_DD 16 -0.171 0.378 25.382 -5.720 1.463 2.752 33.815 C C 11 12 15.082 D D 6 5 3.154 8.674 0.450 -1.300 CC_G11U12:A5C6_DD 17 2.240 -3.896 32.641 -3.524 -0.441 2.300 32.153 C C 12 13 22.711 D D 5 4 3.028 12.193 -0.246 -1.087 CC_U12C13:LCG4A5_DD 18 6.342 -11.813 29.138 -3.832 1.417 repository Initial release 1 0 2026-07-01 United States Howard Hughes Medical Institute (HHMI) United States National Science Foundation (NSF, United States) 2325198 jwszostak@uchicago.edu 0000-0003-4131-1203 Jack Szostak W. principal investigator/group leader N RCSB Y RCSB 2026-06-16 REL REL 0G 0G SUBJECT OF INVESTIGATION 0G L-GUANOSINE-5'-MONOPHOSPHATE DGP 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE MG MAGNESIUM ION HOH water 32630 synthetic construct sample 1 14 Y N 6C8D PDB experimental model 0G 14 2 0G 0G 101 A DGP 101 3 DGP DGP 102 A DGP 102 3 DGP DGP 103 A 0G 14 2 0G 0G 101 B DGP 101 3 DGP DGP 102 B DGP 102 3 DGP DGP 103 B 0G 14 2 0G 0G 101 C DGP 101 3 DGP DGP 102 C DGP 102 3 DGP DGP 103 C MG 1 4 MG MG 104 C MG 2 4 MG MG 105 C 0G 14 2 0G 0G 101 D DGP 101 3 DGP DGP 102 D DGP 102 3 DGP DGP 103 D MG 3 4 MG MG 104 D HOH 44 5 HOH HOH 201 A HOH 46 5 HOH HOH 202 A HOH 51 5 HOH HOH 203 A HOH 50 5 HOH HOH 204 A HOH 49 5 HOH HOH 201 B HOH 45 5 HOH HOH 202 B HOH 53 5 HOH HOH 203 B HOH 50 5 HOH HOH 204 B HOH 28 5 HOH HOH 205 B HOH 44 5 HOH HOH 206 B HOH 27 5 HOH HOH 207 B HOH 54 5 HOH HOH 201 C HOH 16 5 HOH HOH 202 C HOH 26 5 HOH HOH 203 C HOH 20 5 HOH HOH 204 C HOH 25 5 HOH HOH 205 C HOH 24 5 HOH HOH 206 C HOH 8 5 HOH HOH 207 C HOH 23 5 HOH HOH 208 C HOH 10 5 HOH HOH 209 C HOH 18 5 HOH HOH 210 C HOH 9 5 HOH HOH 211 C HOH 35 5 HOH HOH 212 C HOH 13 5 HOH HOH 213 C HOH 3 5 HOH HOH 214 C HOH 7 5 HOH HOH 215 C HOH 71 5 HOH HOH 216 C HOH 14 5 HOH HOH 201 D HOH 11 5 HOH HOH 202 D HOH 42 5 HOH HOH 203 D HOH 31 5 HOH HOH 204 D HOH 74 5 HOH HOH 205 D HOH 29 5 HOH HOH 206 D HOH 56 5 HOH HOH 207 D HOH 12 5 HOH HOH 208 D HOH 52 5 HOH HOH 209 D HOH 5 5 HOH HOH 210 D HOH 72 5 HOH HOH 211 D HOH 30 5 HOH HOH 212 D HOH 32 5 HOH HOH 213 D HOH 2 5 HOH HOH 214 D HOH 57 5 HOH HOH 215 D HOH 96 5 HOH HOH 216 D HOH 22 5 HOH HOH 217 D HOH 73 5 HOH HOH 218 D LCC 1 n 1 LCC 1 A LCC 2 n 2 LCC 2 A LCC 3 n 3 LCC 3 A LCG 4 n 4 LCG 4 A A 5 n 5 A 5 A C 6 n 6 C 6 A U 7 n 7 U 7 A 5BU 8 n 8 5BU 8 A A 9 n 9 A 9 A A 10 n 10 A 10 A G 11 n 11 G 11 A U 12 n 12 U 12 A C 13 n 13 C 13 A n 14 14 A LCC 1 n 1 LCC 1 B LCC 2 n 2 LCC 2 B LCC 3 n 3 LCC 3 B LCG 4 n 4 LCG 4 B A 5 n 5 A 5 B C 6 n 6 C 6 B U 7 n 7 U 7 B 5BU 8 n 8 5BU 8 B A 9 n 9 A 9 B A 10 n 10 A 10 B G 11 n 11 G 11 B U 12 n 12 U 12 B C 13 n 13 C 13 B n 14 14 B LCC 1 n 1 LCC 1 C LCC 2 n 2 LCC 2 C LCC 3 n 3 LCC 3 C LCG 4 n 4 LCG 4 C A 5 n 5 A 5 C C 6 n 6 C 6 C U 7 n 7 U 7 C 5BU 8 n 8 5BU 8 C A 9 n 9 A 9 C A 10 n 10 A 10 C G 11 n 11 G 11 C U 12 n 12 U 12 C C 13 n 13 C 13 C n 14 14 C LCC 1 n 1 LCC 1 D LCC 2 n 2 LCC 2 D LCC 3 n 3 LCC 3 D LCG 4 n 4 LCG 4 D A 5 n 5 A 5 D C 6 n 6 C 6 D U 7 n 7 U 7 D 5BU 8 n 8 5BU 8 D A 9 n 9 A 9 D A 10 n 10 A 10 D G 11 n 11 G 11 D U 12 n 12 U 12 D C 13 n 13 C 13 D n 14 14 D 3.15254514299 -0.861248904082 -0.0772007050882 3.40167288761 1.06520439879 3.00854896441 0.227667781659 0.0736308423739 0.0855021266174 -0.778899975137 0.0963675429507 -0.0328665260856 -0.308605061706 -0.177361888328 -0.21101659778 0.397622180322 -0.0370295560408 -0.0229232283969 0.317059243293 0.0340627563652 0.282023499227 refined 12.9912479507 -2.76520605873 -9.56417388992 X-RAY DIFFRACTION 2.13056415753 1.65634861342 0.504954814866 1.91168907349 1.2084823149 1.29753217965 -0.112295707813 -0.181435527499 0.112414480842 -0.00755007202209 -0.0120844075534 0.0603233744398 -0.310130692661 -0.0853553358372 0.0823070497641 0.303110760392 -0.0125916910967 -0.0264394210773 0.249485817319 0.0356607825445 0.273063900133 refined 12.715336875 -4.89304067763 -2.68974985438 X-RAY DIFFRACTION 3.145787556 0.502786199799 1.51369218751 2.04996481165 0.033056588438 2.80409876322 0.203988465988 -0.245828481231 -0.169106117874 0.315616422641 0.0394845746078 -0.157516376374 -0.0573008740504 0.0781233827612 -0.230108214575 0.292590127258 0.0193886795136 -0.00729313656714 0.278569388372 -0.0593121960367 0.258532182057 refined 8.80862666099 20.5964087467 -19.6351783153 X-RAY DIFFRACTION 3.56393733645 -0.42639195513 1.15617927245 2.10077863664 -0.703434648015 3.23796977718 0.606766962353 0.366239354239 -0.287788104759 -0.251042979152 -0.166424041228 0.105856731394 0.529429376092 -0.0595103774275 -0.377862649528 0.314885981936 -0.000047129471291 -0.0318385585348 0.22729873099 -0.0602769832392 0.267737975051 refined 9.631278863 18.4330371139 -26.7909344043 X-RAY DIFFRACTION A 5 A A 13 A X-RAY DIFFRACTION 1 chain 'A' and (resid 5 through 13 ) B 5 E B 13 E X-RAY DIFFRACTION 2 chain 'B' and (resid 5 through 13 ) C 5 I C 13 I X-RAY DIFFRACTION 3 chain 'C' and (resid 5 through 13 ) D 5 M D 13 M X-RAY DIFFRACTION 4 chain 'D' and (resid 5 through 13 ) author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric mass spectrometry C DGP 103 M N7 DGP 1_555 C MG 105 O MG MG 1_555 C HOH 203 V O HOH 1_555 98.7 C DGP 103 M N7 DGP 1_555 C MG 105 O MG MG 1_555 C HOH 205 V O HOH 1_555 83.8 C HOH 203 V O HOH 1_555 C MG 105 O MG MG 1_555 C HOH 205 V O HOH 1_555 92.3 C DGP 103 M N7 DGP 1_555 C MG 105 O MG MG 1_555 C HOH 206 V O HOH 1_555 84.5 C HOH 203 V O HOH 1_555 C MG 105 O MG MG 1_555 C HOH 206 V O HOH 1_555 176.5 C HOH 205 V O HOH 1_555 C MG 105 O MG MG 1_555 C HOH 206 V O HOH 1_555 86.5 C DGP 103 M N7 DGP 1_555 C MG 105 O MG MG 1_555 C HOH 207 V O HOH 1_555 92.6 C HOH 203 V O HOH 1_555 C MG 105 O MG MG 1_555 C HOH 207 V O HOH 1_555 95.2 C HOH 205 V O HOH 1_555 C MG 105 O MG MG 1_555 C HOH 207 V O HOH 1_555 172.1 C HOH 206 V O HOH 1_555 C MG 105 O MG MG 1_555 C HOH 207 V O HOH 1_555 86.1 C DGP 103 M N7 DGP 1_555 C MG 105 O MG MG 1_555 C HOH 215 V O HOH 1_555 164.5 C HOH 203 V O HOH 1_555 C MG 105 O MG MG 1_555 C HOH 215 V O HOH 1_555 96.4 C HOH 205 V O HOH 1_555 C MG 105 O MG MG 1_555 C HOH 215 V O HOH 1_555 99.5 C HOH 206 V O HOH 1_555 C MG 105 O MG MG 1_555 C HOH 215 V O HOH 1_555 80.6 C HOH 207 V O HOH 1_555 C MG 105 O MG MG 1_555 C HOH 215 V O HOH 1_555 82.2 C HOH 204 V O HOH 4_565 C MG 104 N MG MG 1_555 C HOH 209 V O HOH 1_555 90.1 C HOH 204 V O HOH 4_565 C MG 104 N MG MG 1_555 C HOH 214 V O HOH 4_565 87.6 C HOH 209 V O HOH 1_555 C MG 104 N MG MG 1_555 C HOH 214 V O HOH 4_565 85.5 C HOH 204 V O HOH 4_565 C MG 104 N MG MG 1_555 D DGP 102 Q N7 DGP 1_555 95.2 C HOH 209 V O HOH 1_555 C MG 104 N MG MG 1_555 D DGP 102 Q N7 DGP 1_555 95.7 C HOH 214 V O HOH 4_565 C MG 104 N MG MG 1_555 D DGP 102 Q N7 DGP 1_555 176.9 C HOH 204 V O HOH 4_565 C MG 104 N MG MG 1_555 D HOH 202 W O HOH 1_555 90.4 C HOH 209 V O HOH 1_555 C MG 104 N MG MG 1_555 D HOH 202 W O HOH 1_555 170.6 C HOH 214 V O HOH 4_565 C MG 104 N MG MG 1_555 D HOH 202 W O HOH 1_555 85.1 D DGP 102 Q N7 DGP 1_555 C MG 104 N MG MG 1_555 D HOH 202 W O HOH 1_555 93.6 C HOH 204 V O HOH 4_565 C MG 104 N MG MG 1_555 D HOH 214 W O HOH 1_555 167.3 C HOH 209 V O HOH 1_555 C MG 104 N MG MG 1_555 D HOH 214 W O HOH 1_555 93.3 C HOH 214 V O HOH 4_565 C MG 104 N MG MG 1_555 D HOH 214 W O HOH 1_555 80.5 D DGP 102 Q N7 DGP 1_555 C MG 104 N MG MG 1_555 D HOH 214 W O HOH 1_555 96.6 D HOH 202 W O HOH 1_555 C MG 104 N MG MG 1_555 D HOH 214 W O HOH 1_555 84.3 D HOH 204 W O HOH 1_555 D MG 104 S MG MG 1_555 D HOH 212 W O HOH 1_555 99.2 D HOH 204 W O HOH 1_555 D MG 104 S MG MG 1_555 D HOH 213 W O HOH 1_555 98.5 D HOH 212 W O HOH 1_555 D MG 104 S MG MG 1_555 D HOH 213 W O HOH 1_555 81.5 D HOH 204 W O HOH 1_555 D MG 104 S MG MG 1_555 D HOH 217 W O HOH 1_555 169.5 D HOH 212 W O HOH 1_555 D MG 104 S MG MG 1_555 D HOH 217 W O HOH 1_555 76.1 D HOH 213 W O HOH 1_555 D MG 104 S MG MG 1_555 D HOH 217 W O HOH 1_555 90.2 D HOH 204 W O HOH 1_555 D MG 104 S MG MG 1_555 D HOH 218 W O HOH 1_555 88.1 D HOH 212 W O HOH 1_555 D MG 104 S MG MG 1_555 D HOH 218 W O HOH 1_555 89.0 D HOH 213 W O HOH 1_555 D MG 104 S MG MG 1_555 D HOH 218 W O HOH 1_555 169.2 D HOH 217 W O HOH 1_555 D MG 104 S MG MG 1_555 D HOH 218 W O HOH 1_555 82.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A G 14 A G 14 1 Y 1 B G 14 B G 14 1 Y 1 C G 14 C G 14 1 Y 1 D G 14 D G 14 1 Y 35.59 0.2586 0.2237 0.2273 1.73 42.30 1484 13273 14757 10.06 73.7 0.2535 1 FREE R-VALUE 1.36 MOLECULAR REPLACEMENT 36.8404 0.9000 1.1000 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 1.73 42.30 45 1432 279 1108 0 0.0080 1548 1.5127 2426 0.0551 280 0.0058 64 22.0105 752 0.1134 0.3275 1.79 1 740 49.8 31.33 1.73 42.3 36LE 14792 0.996 1 6.4 4.9 91.6 1.73 1.92 740 .555 1 49.8 refinement PHENIX 1.21.2_5419 data reduction autoPROC 1.0.5 data scaling autoPROC 1.0.5 phasing PHASER 2.8.3 18 orthorhombic P 21 2 21 P 2 2ab (y,z,x) x,y,z x+1/2,-y,-z+1/2 -x,y,-z -x+1/2,-y,z+1/2 N RNA-dGMP complex with L-G-terminal primer 1 N N 1 N N 1 N N 1 N N 2 N N 3 N N 3 N N 2 N N 3 N N 3 N N 2 N N 3 N N 3 N N 4 N N 4 N N 2 N N 3 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N covale 1.610 both A LCC 1 A O3' LCC 1 1_555 A LCC 2 A P LCC 2 1_555 covale 1.615 both A LCC 2 A O3' LCC 2 1_555 A LCC 3 A P LCC 3 1_555 covale 1.607 both A LCC 3 A O3' LCC 3 1_555 A LCG 4 A P LCG 4 1_555 covale 1.616 both A LCG 4 A O3' LCG 4 1_555 A A 5 A P A 5 1_555 covale 1.611 both A U 7 A O3' U 7 1_555 A 5BU 8 A P 5BU 8 1_555 covale 1.611 both A 5BU 8 A O3' 5BU 8 1_555 A A 9 A P A 9 1_555 covale 1.601 both A C 13 A O3' C 13 1_555 A 0G 101 E P 0G 1_555 covale 1.606 both B LCC 1 B O3' LCC 1 1_555 B LCC 2 B P LCC 2 1_555 covale 1.612 both B LCC 2 B O3' LCC 2 1_555 B LCC 3 B P LCC 3 1_555 covale 1.607 both B LCC 3 B O3' LCC 3 1_555 B LCG 4 B P LCG 4 1_555 covale 1.615 both B LCG 4 B O3' LCG 4 1_555 B A 5 B P A 5 1_555 covale 1.608 both B U 7 B O3' U 7 1_555 B 5BU 8 B P 5BU 8 1_555 covale 1.615 both B 5BU 8 B O3' 5BU 8 1_555 B A 9 B P A 9 1_555 covale 1.613 both B C 13 B O3' C 13 1_555 B 0G 101 H P 0G 1_555 covale 1.616 both C LCC 1 C O3' LCC 1 1_555 C LCC 2 C P LCC 2 1_555 covale 1.605 both C LCC 2 C O3' LCC 2 1_555 C LCC 3 C P LCC 3 1_555 covale 1.611 both C LCC 3 C O3' LCC 3 1_555 C LCG 4 C P LCG 4 1_555 covale 1.618 both C LCG 4 C O3' LCG 4 1_555 C A 5 C P A 5 1_555 covale 1.605 both C U 7 C O3' U 7 1_555 C 5BU 8 C P 5BU 8 1_555 covale 1.616 both C 5BU 8 C O3' 5BU 8 1_555 C A 9 C P A 9 1_555 covale 1.613 both C C 13 C O3' C 13 1_555 C 0G 101 K P 0G 1_555 covale 1.606 both D LCC 1 D O3' LCC 1 1_555 D LCC 2 D P LCC 2 1_555 covale 1.610 both D LCC 2 D O3' LCC 2 1_555 D LCC 3 D P LCC 3 1_555 covale 1.613 both D LCC 3 D O3' LCC 3 1_555 D LCG 4 D P LCG 4 1_555 covale 1.610 both D LCG 4 D O3' LCG 4 1_555 D A 5 D P A 5 1_555 covale 1.610 both D U 7 D O3' U 7 1_555 D 5BU 8 D P 5BU 8 1_555 covale 1.612 both D 5BU 8 D O3' 5BU 8 1_555 D A 9 D P A 9 1_555 covale 1.605 both D C 13 D O3' C 13 1_555 D 0G 101 P P 0G 1_555 metalc 2.263 C DGP 103 M N7 DGP 1_555 C MG 105 O MG MG 1_555 metalc 2.045 C MG 104 N MG MG 1_555 C HOH 204 V O HOH 4_565 metalc 1.887 C MG 104 N MG MG 1_555 C HOH 209 V O HOH 1_555 metalc 2.200 C MG 104 N MG MG 1_555 C HOH 214 V O HOH 4_565 metalc 2.171 C MG 104 N MG MG 1_555 D DGP 102 Q N7 DGP 1_555 metalc 1.994 C MG 104 N MG MG 1_555 D HOH 202 W O HOH 1_555 metalc 2.055 C MG 104 N MG MG 1_555 D HOH 214 W O HOH 1_555 metalc 2.111 C MG 105 O MG MG 1_555 C HOH 203 V O HOH 1_555 metalc 1.876 C MG 105 O MG MG 1_555 C HOH 205 V O HOH 1_555 metalc 2.088 C MG 105 O MG MG 1_555 C HOH 206 V O HOH 1_555 metalc 2.086 C MG 105 O MG MG 1_555 C HOH 207 V O HOH 1_555 metalc 2.113 C MG 105 O MG MG 1_555 C HOH 215 V O HOH 1_555 metalc 1.941 D MG 104 S MG MG 1_555 D HOH 204 W O HOH 1_555 metalc 2.218 D MG 104 S MG MG 1_555 D HOH 212 W O HOH 1_555 metalc 2.151 D MG 104 S MG MG 1_555 D HOH 213 W O HOH 1_555 metalc 2.218 D MG 104 S MG MG 1_555 D HOH 217 W O HOH 1_555 metalc 1.949 D MG 104 S MG MG 1_555 D HOH 218 W O HOH 1_555 hydrog WATSON-CRICK A LCG 4 A N1 LCG 4 1_555 B C 13 B N3 C 13 1_555 hydrog WATSON-CRICK A LCG 4 A N2 LCG 4 1_555 B C 13 B O2 C 13 1_555 hydrog WATSON-CRICK A LCG 4 A O6 LCG 4 1_555 B C 13 B N4 C 13 1_555 hydrog WATSON-CRICK A A 5 A N1 A 5 1_555 B U 12 B N3 U 12 1_555 hydrog WATSON-CRICK A A 5 A N6 A 5 1_555 B U 12 B O4 U 12 1_555 hydrog WATSON-CRICK A C 6 A N3 C 6 1_555 B G 11 B N1 G 11 1_555 hydrog WATSON-CRICK A C 6 A N4 C 6 1_555 B G 11 B O6 G 11 1_555 hydrog WATSON-CRICK A C 6 A O2 C 6 1_555 B G 11 B N2 G 11 1_555 hydrog WATSON-CRICK A U 7 A N3 U 7 1_555 B A 10 B N1 A 10 1_555 hydrog WATSON-CRICK A U 7 A O4 U 7 1_555 B A 10 B N6 A 10 1_555 hydrog WATSON-CRICK A 5BU 8 A N3 5BU 8 1_555 B A 9 B N1 A 9 1_555 hydrog WATSON-CRICK A 5BU 8 A O4 5BU 8 1_555 B A 9 B N6 A 9 1_555 hydrog WATSON-CRICK A A 9 A N1 A 9 1_555 B 5BU 8 B N3 5BU 8 1_555 hydrog WATSON-CRICK A A 9 A N6 A 9 1_555 B 5BU 8 B O4 5BU 8 1_555 hydrog WATSON-CRICK A A 10 A N1 A 10 1_555 B U 7 B N3 U 7 1_555 hydrog WATSON-CRICK A A 10 A N6 A 10 1_555 B U 7 B O4 U 7 1_555 hydrog WATSON-CRICK A G 11 A N1 G 11 1_555 B C 6 B N3 C 6 1_555 hydrog WATSON-CRICK A G 11 A N2 G 11 1_555 B C 6 B O2 C 6 1_555 hydrog WATSON-CRICK A G 11 A O6 G 11 1_555 B C 6 B N4 C 6 1_555 hydrog WATSON-CRICK A U 12 A N3 U 12 1_555 B A 5 B N1 A 5 1_555 hydrog WATSON-CRICK A U 12 A O4 U 12 1_555 B A 5 B N6 A 5 1_555 hydrog WATSON-CRICK A C 13 A N3 C 13 1_555 B LCG 4 B N1 LCG 4 1_555 hydrog WATSON-CRICK A C 13 A N4 C 13 1_555 B LCG 4 B O6 LCG 4 1_555 hydrog WATSON-CRICK A C 13 A O2 C 13 1_555 B LCG 4 B N2 LCG 4 1_555 hydrog WATSON-CRICK C LCG 4 C N1 LCG 4 1_555 D C 13 D N3 C 13 1_555 hydrog WATSON-CRICK C LCG 4 C N2 LCG 4 1_555 D C 13 D O2 C 13 1_555 hydrog WATSON-CRICK C LCG 4 C O6 LCG 4 1_555 D C 13 D N4 C 13 1_555 hydrog WATSON-CRICK C A 5 C N1 A 5 1_555 D U 12 D N3 U 12 1_555 hydrog WATSON-CRICK C A 5 C N6 A 5 1_555 D U 12 D O4 U 12 1_555 hydrog WATSON-CRICK C C 6 C N3 C 6 1_555 D G 11 D N1 G 11 1_555 hydrog WATSON-CRICK C C 6 C N4 C 6 1_555 D G 11 D O6 G 11 1_555 hydrog WATSON-CRICK C C 6 C O2 C 6 1_555 D G 11 D N2 G 11 1_555 hydrog WATSON-CRICK C U 7 C N3 U 7 1_555 D A 10 D N1 A 10 1_555 hydrog WATSON-CRICK C U 7 C O4 U 7 1_555 D A 10 D N6 A 10 1_555 hydrog WATSON-CRICK C 5BU 8 C N3 5BU 8 1_555 D A 9 D N1 A 9 1_555 hydrog WATSON-CRICK C 5BU 8 C O4 5BU 8 1_555 D A 9 D N6 A 9 1_555 hydrog WATSON-CRICK C A 9 C N1 A 9 1_555 D 5BU 8 D N3 5BU 8 1_555 hydrog WATSON-CRICK C A 9 C N6 A 9 1_555 D 5BU 8 D O4 5BU 8 1_555 hydrog WATSON-CRICK C A 10 C N1 A 10 1_555 D U 7 D N3 U 7 1_555 hydrog WATSON-CRICK C A 10 C N6 A 10 1_555 D U 7 D O4 U 7 1_555 hydrog WATSON-CRICK C G 11 C N1 G 11 1_555 D C 6 D N3 C 6 1_555 hydrog WATSON-CRICK C G 11 C N2 G 11 1_555 D C 6 D O2 C 6 1_555 hydrog WATSON-CRICK C G 11 C O6 G 11 1_555 D C 6 D N4 C 6 1_555 hydrog WATSON-CRICK C U 12 C N3 U 12 1_555 D A 5 D N1 A 5 1_555 hydrog WATSON-CRICK C U 12 C O4 U 12 1_555 D A 5 D N6 A 5 1_555 hydrog WATSON-CRICK C C 13 C N3 C 13 1_555 D LCG 4 D N1 LCG 4 1_555 hydrog WATSON-CRICK C C 13 C N4 C 13 1_555 D LCG 4 D O6 LCG 4 1_555 hydrog WATSON-CRICK C C 13 C O2 C 13 1_555 D LCG 4 D N2 LCG 4 1_555 RNA Nonenzymatic RNA replication, Chirality, RNA 36LE PDB 1 1 36LE 1 14 36LE 1 14 36LE A 1 1 14 1 14 36LE 1 14 36LE B 1 1 14 1 14 36LE 1 14 36LE C 1 1 14 1 14 36LE 1 14 36LE D 1 1 14 18 P 21 2 21 P 2 2ab (y,z,x)