0.025268 0.014589 0.000000 0.000000 0.029178 0.000000 0.000000 0.000000 0.004958 0.00000 0.00000 0.00000 3.54356 2.42580 25.62398 1.50364 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.01032 2.96436 19.97189 1.75589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.49882 3.47563 15.80542 1.70748 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.51135 5.44231 1.42069 35.72801 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.55732 6.39887 1.23737 29.19336 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 24.64596 5.25405 2.14387 29.76375 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. Horton, J.R. Cheng, X. Zhou, J. Lee, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 39.575 39.575 201.688 273559.964 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N C N 232 N O N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N N N 242 S C N 243 N C N 244 N O N 245 N C N 246 N C N 247 N C N 248 N O N 249 N N N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N C N 268 N O N 269 N O N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 N C N 282 N C N 283 N O N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C Y 295 N C Y 296 N N Y 297 N C Y 298 N C Y 299 N N N 300 N O N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N O N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 S C N 319 N C N 320 N C N 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C N 341 N C N 342 N C N 343 N C N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N C N 366 N N N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C N 388 N C N 389 N S N 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C N 431 N C N 432 N C N 433 N O N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N N N 444 S C N 445 N C N 446 N O N 447 N C N 448 N O N 449 N O N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N N N 458 S C N 459 N C N 460 N O N 461 R C N 462 N O N 463 N C N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N N N 475 S C N 476 N C N 477 N O N 478 N C Y 479 N C Y 480 N C Y 481 N C Y 482 N C Y 483 N C Y 484 N C N 485 N O N 486 N O N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N N N 499 S C N 500 N C N 501 N O N 502 N C N 503 N C N 504 N C N 505 N O N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing Y 298 N sing Y 299 N doub Y 300 N doub N 301 N sing Y 302 N sing N 303 N sing Y 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N doub N 402 N sing N 403 N sing N 404 N sing N 405 N sing Y 406 N doub Y 407 N sing Y 408 N sing N 409 N sing Y 410 N doub N 411 N sing Y 412 N doub N 413 N sing Y 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N doub N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N doub N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N doub N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N doub N 471 N sing N 472 N sing N 473 N sing N 474 N sing Y 475 N doub Y 476 N sing Y 477 N sing N 478 N sing Y 479 N doub N 480 N sing Y 481 N doub N 482 N sing Y 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N doub N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing US Biorxiv 2692-8205 10.64898/2026.05.01.721897 42232506 Bipartite DNA binding domain of transcription factor BCL11B binds clustered short DNA sequence motifs. 2026 0009-0004-2163-3015 0000-0003-4104-7158 0000-0001-9749-8068 0000-0002-0298-2832 0000-0002-9533-4761 0000-0001-5950-9168 0000-0002-0873-0724 0000-0002-6160-7688 0000-0002-6967-6362 10.2210/pdb12um/pdb pdb_000012um 100 1 N PIXEL 2025-08-04 DECTRIS EIGER X 9M SINGLE WAVELENGTH M x-ray 1 0.919716 1.0 17-ID APS 0.919716 SYNCHROTRON APS BEAMLINE 17-ID 7390.648 B-cell lymphoma/leukemia 11B domains ZF2-3 1 man polymer 3686.429 Strand I 1 syn polymer 3637.391 Strand II 1 syn polymer 62.068 1,2-ETHANEDIOL 1 syn non-polymer 65.409 ZINC ION 2 syn non-polymer 18.015 water 45 nat water BCL-11B,B-cell CLL/lymphoma 11B,COUP-TF-interacting protein 2,Radiation-induced tumor suppressor gene 1 protein,hRit1 no no GPLGSPAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKCQLCDHACSQASKLKRHMKTHMHKAGS GPLGSPAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKCQLCDHACSQASKLKRHMKTHMHKAGS A polypeptide(L) no no (DA)(DG)(DA)(DT)(DG)(DG)(DA)(DC)(DA)(DT)(DT)(DC) AGATGGACATTC D polydeoxyribonucleotide no no (DG)(DA)(DA)(DT)(DG)(DT)(DC)(DC)(DA)(DT)(DC)(DT) GAATGTCCATCT E polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 1 66 BCL11B, CTIP2, RIT1 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) Gold Plus Biological sequence 1 3.10 60.30 VAPOR DIFFUSION, SITTING DROP 5.8 26 % w/v PEG 2000 MME, 0.1 M Bis-Tris 5.8 292 8.257 1 20 D 1 E 12 -0.251 D_DA1:DT12_E 1 -8.106 -0.217 0.015 -0.259 1.749 1 19 D 2 E 11 -0.527 D_DG2:DC11_E 2 -14.086 -0.393 0.245 -0.183 -1.196 1 20 D 3 E 10 -1.814 D_DA3:DT10_E 3 -14.760 0.168 0.237 -0.199 -3.622 1 20 D 4 E 9 -0.371 D_DT4:DA9_E 4 -9.873 0.051 0.102 -0.115 -1.325 1 19 D 5 E 8 0.060 D_DG5:DC8_E 5 -5.501 -0.167 -0.202 -0.184 2.733 1 19 D 6 E 7 -0.111 D_DG6:DC7_E 6 -7.940 0.190 0.223 -0.070 1.891 1 20 D 7 E 6 1.524 D_DA7:DT6_E 7 -7.473 0.695 -0.051 -0.180 14.248 1 19 D 8 E 5 0.406 D_DC8:DG5_E 8 -7.081 0.310 -0.270 -0.019 -3.011 1 20 D 9 E 4 2.346 D_DA9:DT4_E 9 -11.557 -0.093 -0.075 -0.053 1.105 1 20 D 10 E 3 1.350 D_DT10:DA3_E 10 -14.667 -0.258 0.258 -0.158 -3.324 1 20 D 11 E 2 0.281 D_DT11:DA2_E 11 -12.243 0.302 -0.002 -0.253 -3.799 1 19 D 12 E 1 3.920 D_DC12:DG1_E 12 -10.561 0.688 0.219 -0.128 3.438 35.578 D D 1 2 0.968 E E 12 11 3.416 0.591 -0.386 0.090 DD_DA1DG2:DC11DT12_EE 1 -3.226 5.287 35.432 0.057 0.139 3.221 40.145 D D 2 3 3.423 E E 11 10 3.233 2.348 -0.298 -0.246 DD_DG2DA3:DT10DC11_EE 2 -1.119 1.631 40.065 -0.623 0.309 3.427 33.033 D D 3 4 -4.269 E E 10 9 3.379 -2.424 0.352 -0.612 DD_DA3DT4:DA9DT10_EE 3 1.666 -2.934 32.906 -0.648 -0.325 3.477 38.770 D D 4 5 6.698 E E 9 8 3.315 4.426 0.743 1.048 DD_DT4DG5:DC8DA9_EE 4 5.027 -7.607 38.209 1.013 -0.477 3.296 37.069 D D 5 6 3.298 E E 8 7 3.180 2.084 -0.789 0.549 DD_DG5DG6:DC7DC8_EE 5 -7.115 11.263 36.345 0.585 0.288 3.350 36.657 D D 6 7 -0.409 E E 7 6 3.372 -0.257 -0.527 -0.060 DD_DG6DA7:DT6DC7_EE 6 1.422 -2.262 36.630 -0.059 1.038 2.879 26.774 D D 7 8 10.117 E E 6 5 2.976 4.656 0.226 -0.361 DD_DA7DC8:DG5DT6_EE 7 2.258 -4.905 26.278 -1.869 0.040 3.600 41.201 D D 8 9 7.478 E E 5 4 3.682 5.247 0.290 -0.308 DD_DC8DA9:DT4DG5_EE 8 -1.924 2.742 40.837 -1.071 -0.645 3.218 34.325 D D 9 10 -4.822 E E 4 3 3.198 -2.839 0.063 -0.594 DD_DA9DT10:DA3DT4_EE 9 -3.071 5.217 34.077 -0.569 -0.580 3.301 34.816 D D 10 11 0.250 E E 3 2 3.332 0.149 -0.362 -0.592 DD_DT10DT11:DA2DA3_EE 10 2.219 -3.711 34.747 -1.013 0.947 3.307 34.069 D D 11 12 4.926 E E 2 1 3.338 2.883 0.063 -0.216 DD_DT11DC12:DG1DA2_EE 11 -0.833 1.424 33.941 -0.835 -0.242 repository Initial release 1 0 2026-07-01 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R35GM134744 United States Cancer Prevention and Research Institute of Texas (CPRIT) RR160029 XCheng5@mdanderson.org 0000-0002-6967-6362 Xiaodong Cheng principal investigator/group leader N RCSB Y RCSB 2026-04-19 REL REL EDO 1,2-ETHANEDIOL ZN ZINC ION HOH water 9606 Homo sapiens sample 1 12 9606 Homo sapiens sample 1 12 N N AlphaFold in silico model EDO 551 4 EDO EDO 501 A ZN 1 5 ZN ZN 502 A ZN 1 5 ZN ZN 503 A HOH 30 6 HOH HOH 601 A HOH 31 6 HOH HOH 602 A HOH 13 6 HOH HOH 603 A HOH 33 6 HOH HOH 604 A HOH 8 6 HOH HOH 605 A HOH 17 6 HOH HOH 606 A HOH 15 6 HOH HOH 607 A HOH 39 6 HOH HOH 608 A HOH 5 6 HOH HOH 609 A HOH 10 6 HOH HOH 610 A HOH 29 6 HOH HOH 611 A HOH 7 6 HOH HOH 612 A HOH 14 6 HOH HOH 613 A HOH 64 6 HOH HOH 614 A HOH 34 6 HOH HOH 615 A HOH 50 6 HOH HOH 616 A HOH 90 6 HOH HOH 617 A HOH 101 6 HOH HOH 618 A HOH 28 6 HOH HOH 619 A HOH 100 6 HOH HOH 620 A HOH 81 6 HOH HOH 621 A HOH 87 6 HOH HOH 622 A HOH 53 6 HOH HOH 623 A HOH 22 6 HOH HOH 101 D HOH 95 6 HOH HOH 102 D HOH 44 6 HOH HOH 103 D HOH 102 6 HOH HOH 104 D HOH 79 6 HOH HOH 105 D HOH 37 6 HOH HOH 106 D HOH 99 6 HOH HOH 107 D HOH 38 6 HOH HOH 108 D HOH 75 6 HOH HOH 109 D HOH 49 6 HOH HOH 110 D HOH 96 6 HOH HOH 111 D HOH 16 6 HOH HOH 101 E HOH 12 6 HOH HOH 102 E HOH 42 6 HOH HOH 103 E HOH 4 6 HOH HOH 104 E HOH 54 6 HOH HOH 105 E HOH 25 6 HOH HOH 106 E HOH 91 6 HOH HOH 107 E HOH 98 6 HOH HOH 108 E HOH 77 6 HOH HOH 109 E HOH 11 6 HOH HOH 110 E HOH 94 6 HOH HOH 111 E n 1 418 A n 2 419 A n 3 420 A n 4 421 A n 5 422 A n 6 423 A n 7 424 A n 8 425 A SER 426 n 9 SER 426 A LYS 427 n 10 LYS 427 A SER 428 n 11 SER 428 A CYS 429 n 12 CYS 429 A GLU 430 n 13 GLU 430 A PHE 431 n 14 PHE 431 A CYS 432 n 15 CYS 432 A GLY 433 n 16 GLY 433 A LYS 434 n 17 LYS 434 A THR 435 n 18 THR 435 A PHE 436 n 19 PHE 436 A LYS 437 n 20 LYS 437 A PHE 438 n 21 PHE 438 A GLN 439 n 22 GLN 439 A SER 440 n 23 SER 440 A ASN 441 n 24 ASN 441 A LEU 442 n 25 LEU 442 A ILE 443 n 26 ILE 443 A VAL 444 n 27 VAL 444 A HIS 445 n 28 HIS 445 A ARG 446 n 29 ARG 446 A ARG 447 n 30 ARG 447 A SER 448 n 31 SER 448 A HIS 449 n 32 HIS 449 A THR 450 n 33 THR 450 A GLY 451 n 34 GLY 451 A GLU 452 n 35 GLU 452 A LYS 453 n 36 LYS 453 A PRO 454 n 37 PRO 454 A TYR 455 n 38 TYR 455 A LYS 456 n 39 LYS 456 A CYS 457 n 40 CYS 457 A GLN 458 n 41 GLN 458 A LEU 459 n 42 LEU 459 A CYS 460 n 43 CYS 460 A ASP 461 n 44 ASP 461 A HIS 462 n 45 HIS 462 A ALA 463 n 46 ALA 463 A CYS 464 n 47 CYS 464 A SER 465 n 48 SER 465 A GLN 466 n 49 GLN 466 A ALA 467 n 50 ALA 467 A SER 468 n 51 SER 468 A LYS 469 n 52 LYS 469 A LEU 470 n 53 LEU 470 A LYS 471 n 54 LYS 471 A ARG 472 n 55 ARG 472 A HIS 473 n 56 HIS 473 A MET 474 n 57 MET 474 A LYS 475 n 58 LYS 475 A THR 476 n 59 THR 476 A HIS 477 n 60 HIS 477 A MET 478 n 61 MET 478 A HIS 479 n 62 HIS 479 A LYS 480 n 63 LYS 480 A ALA 481 n 64 ALA 481 A GLY 482 n 65 GLY 482 A n 66 483 A DA 1 n 1 DA 1 D DG 2 n 2 DG 2 D DA 3 n 3 DA 3 D DT 4 n 4 DT 4 D DG 5 n 5 DG 5 D DG 6 n 6 DG 6 D DA 7 n 7 DA 7 D DC 8 n 8 DC 8 D DA 9 n 9 DA 9 D DT 10 n 10 DT 10 D DT 11 n 11 DT 11 D DC 12 n 12 DC 12 D DG 1 n 1 DG 1 E DA 2 n 2 DA 2 E DA 3 n 3 DA 3 E DT 4 n 4 DT 4 E DG 5 n 5 DG 5 E DT 6 n 6 DT 6 E DC 7 n 7 DC 7 E DC 8 n 8 DC 8 E DA 9 n 9 DA 9 E DT 10 n 10 DT 10 E DC 11 n 11 DC 11 E DT 12 n 12 DT 12 E 2.3605008505356446 -0.28729553952985654 0.7540616711945202 1.09398726719107 -0.344107878238423 0.9140478557029613 -0.5460489376683592 0.7535440642277006 0.6086343116885606 -0.3018895008316005 0.507655562615463 0.13839834916080104 -0.006813690852258707 0.09684826174843468 -0.05189474884299417 0.12294720022907751 -0.09106696380271714 -0.08698152366305592 0.9109817264556345 0.16676345093791478 0.7035419817484422 refined -0.9168828840644234 8.664150236702623 1.5946942358286487 X-RAY DIFFRACTION 3.0266608291601464 0.6658975463987051 -0.503810293000964 4.518130212662734 -0.23940988386413378 2.8286183569881542 -0.552586551550987 -0.25634493546373555 0.3344087810889873 0.025552286353868303 0.3112047888561011 0.4124282551753799 0.012284768715251465 -0.833509244404472 0.2557074209316559 0.3451349773496678 0.26026577363549014 0.026356936584504366 0.7436809648959332 0.08490319330392965 0.3858156038929071 refined -6.658449439566704 0.2420120577283499 13.49357772656893 X-RAY DIFFRACTION 5.156145343580789 0.2483436134801134 -4.826721814521299 7.537743609852663 -0.8956753707241188 4.628555158856575 -0.6677018048580152 0.6775091121518075 0.20054062902950623 -0.48144975543523283 0.38710091524815443 -0.18569558873863487 0.8622236847426591 -0.08925098152641285 0.2415203917703087 0.36559181912966754 -0.11209832563850862 -0.022583645996240825 0.6329015094888271 0.02864110655604156 0.3238240759038888 refined 3.338812618761692 -2.7334125544455206 -6.144163666969954 X-RAY DIFFRACTION 3.441374246554121 0.09066062334423926 0.1092519034830583 1.586898240490696 -0.5755288857744768 0.5887600602085378 -0.6701712526602129 -0.2769891490743914 0.4464656075403324 -0.01602398072364075 0.6456035376626449 0.19857688539563037 0.051356086466599 -0.15500069222085103 0.030248825856147556 0.19924799806179178 -0.045966508604896095 -0.05001550059743596 0.9248115524848926 0.07332389046992933 0.6387081044862363 refined -1.4730741687361322 8.095478159894512 2.821087268371138 X-RAY DIFFRACTION E 1 D E 12 D X-RAY DIFFRACTION 1 chain 'E' and (resid 1 through 12 ) A 426 A 1 A 455 A 30 X-RAY DIFFRACTION 2 chain 'A' and (resid 426 through 455 ) A 456 A 31 A 481 A 56 X-RAY DIFFRACTION 3 chain 'A' and (resid 456 through 481 ) D 1 C D 12 C X-RAY DIFFRACTION 4 chain 'D' and (resid 1 through 12 ) author_and_software_defined_assembly PISA 3 trimeric fluorescence resonance energy transfer A CYS 429 A SG CYS 12 1_555 A ZN 503 F ZN ZN 1_555 A CYS 432 A SG CYS 15 1_555 118.0 A CYS 429 A SG CYS 12 1_555 A ZN 503 F ZN ZN 1_555 A HIS 445 A NE2 HIS 28 1_555 106.5 A CYS 432 A SG CYS 15 1_555 A ZN 503 F ZN ZN 1_555 A HIS 445 A NE2 HIS 28 1_555 105.2 A CYS 429 A SG CYS 12 1_555 A ZN 503 F ZN ZN 1_555 A HIS 449 A NE2 HIS 32 1_555 108.7 A CYS 432 A SG CYS 15 1_555 A ZN 503 F ZN ZN 1_555 A HIS 449 A NE2 HIS 32 1_555 115.1 A HIS 445 A NE2 HIS 28 1_555 A ZN 503 F ZN ZN 1_555 A HIS 449 A NE2 HIS 32 1_555 101.6 A CYS 457 A SG CYS 40 1_555 A ZN 502 E ZN ZN 1_555 A CYS 460 A SG CYS 43 1_555 118.9 A CYS 457 A SG CYS 40 1_555 A ZN 502 E ZN ZN 1_555 A HIS 473 A NE2 HIS 56 1_555 112.0 A CYS 460 A SG CYS 43 1_555 A ZN 502 E ZN ZN 1_555 A HIS 473 A NE2 HIS 56 1_555 101.0 A CYS 457 A SG CYS 40 1_555 A ZN 502 E ZN ZN 1_555 A HIS 477 A NE2 HIS 60 1_555 104.6 A CYS 460 A SG CYS 43 1_555 A ZN 502 E ZN ZN 1_555 A HIS 477 A NE2 HIS 60 1_555 112.9 A HIS 473 A NE2 HIS 56 1_555 A ZN 502 E ZN ZN 1_555 A HIS 477 A NE2 HIS 60 1_555 107.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 427 A N LYS 10 A O PHE 436 A O PHE 19 A N TYR 455 A N TYR 38 A O CYS 464 A O CYS 47 1 A OG SER 426 A OG SER 9 1 Y 1 A CG LYS 437 A CG LYS 20 1 Y 1 A CD LYS 437 A CD LYS 20 1 Y 1 A CE LYS 437 A CE LYS 20 1 Y 1 A NZ LYS 437 A NZ LYS 20 1 Y 1 A GLY 418 A GLY 1 1 Y 1 A PRO 419 A PRO 2 1 Y 1 A LEU 420 A LEU 3 1 Y 1 A GLY 421 A GLY 4 1 Y 1 A SER 422 A SER 5 1 Y 1 A PRO 423 A PRO 6 1 Y 1 A ALA 424 A ALA 7 1 Y 1 A LYS 425 A LYS 8 1 Y 1 A SER 483 A SER 66 1 Y 58.49 0.2179 0.1886 0.1900 1.93 33.79 1308 25136 26444 4.95 99.77 0.2623 1 FREE R-VALUE 1.34 MOLECULAR REPLACEMENT 34.7290 0.9000 1.1000 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 1.93 33.79 45 988 6 486 451 0.0065 1016 0.8991 1453 0.0458 156 0.0049 101 26.3925 433 0.3632 0.3530 2.01 198 2786 99.57 0.3337 0.3130 2.10 156 2768 99.97 0.3075 0.2775 2.21 150 2813 100.00 0.3496 0.2970 2.35 110 2797 100.00 0.2855 0.2846 2.53 148 2778 100.00 0.2827 0.2527 2.79 143 2788 99.73 0.2687 0.2482 3.19 168 2775 100.00 0.1883 0.1513 4.01 102 2843 99.23 0.1450 0.1246 33.79 133 2788 99.59 45.14 1.93 33.79 12UM 26498 0.997 0.126 0.029 1 14.1 20.2 100 1.93 1.97 0.9 1399 0.364 1 20.4 100 refinement PHENIX 2.0_5885 data reduction autoPROC data scaling autoPROC phasing PHENIX 170 hexagonal P 65 P 65 x,y,z x-y,x,z+5/6 y,-x+y,z+1/6 -y,x-y,z+2/3 -x+y,-x,z+1/3 -x,-y,z+1/2 N BCL11B ZF2-3 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGTCCA (Oligo 3-5) 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N 6 N N 6 N N A PHE 438 A PHE 21 HELX_P A GLY 451 A GLY 34 1 AA1 14 A GLN 466 A GLN 49 HELX_P A MET 474 A MET 57 1 AA2 9 A LYS 475 A LYS 58 HELX_P A MET 478 A MET 61 5 AA3 4 metalc 2.287 A CYS 429 A SG CYS 12 1_555 A ZN 503 F ZN ZN 1_555 metalc 2.288 A CYS 432 A SG CYS 15 1_555 A ZN 503 F ZN ZN 1_555 metalc 2.064 A HIS 445 A NE2 HIS 28 1_555 A ZN 503 F ZN ZN 1_555 metalc 2.068 A HIS 449 A NE2 HIS 32 1_555 A ZN 503 F ZN ZN 1_555 metalc 2.268 A CYS 457 A SG CYS 40 1_555 A ZN 502 E ZN ZN 1_555 metalc 2.289 A CYS 460 A SG CYS 43 1_555 A ZN 502 E ZN ZN 1_555 metalc 2.065 A HIS 473 A NE2 HIS 56 1_555 A ZN 502 E ZN ZN 1_555 metalc 2.042 A HIS 477 A NE2 HIS 60 1_555 A ZN 502 E ZN ZN 1_555 hydrog WATSON-CRICK D DA 1 B N1 DA 1 1_555 E DT 12 C N3 DT 12 1_555 hydrog WATSON-CRICK D DA 1 B N6 DA 1 1_555 E DT 12 C O4 DT 12 1_555 hydrog WATSON-CRICK D DG 2 B N1 DG 2 1_555 E DC 11 C N3 DC 11 1_555 hydrog WATSON-CRICK D DG 2 B N2 DG 2 1_555 E DC 11 C O2 DC 11 1_555 hydrog WATSON-CRICK D DG 2 B O6 DG 2 1_555 E DC 11 C N4 DC 11 1_555 hydrog WATSON-CRICK D DA 3 B N1 DA 3 1_555 E DT 10 C N3 DT 10 1_555 hydrog WATSON-CRICK D DA 3 B N6 DA 3 1_555 E DT 10 C O4 DT 10 1_555 hydrog WATSON-CRICK D DT 4 B N3 DT 4 1_555 E DA 9 C N1 DA 9 1_555 hydrog WATSON-CRICK D DT 4 B O4 DT 4 1_555 E DA 9 C N6 DA 9 1_555 hydrog WATSON-CRICK D DG 5 B N1 DG 5 1_555 E DC 8 C N3 DC 8 1_555 hydrog WATSON-CRICK D DG 5 B N2 DG 5 1_555 E DC 8 C O2 DC 8 1_555 hydrog WATSON-CRICK D DG 5 B O6 DG 5 1_555 E DC 8 C N4 DC 8 1_555 hydrog WATSON-CRICK D DG 6 B N1 DG 6 1_555 E DC 7 C N3 DC 7 1_555 hydrog WATSON-CRICK D DG 6 B N2 DG 6 1_555 E DC 7 C O2 DC 7 1_555 hydrog WATSON-CRICK D DG 6 B O6 DG 6 1_555 E DC 7 C N4 DC 7 1_555 hydrog WATSON-CRICK D DA 7 B N1 DA 7 1_555 E DT 6 C N3 DT 6 1_555 hydrog WATSON-CRICK D DA 7 B N6 DA 7 1_555 E DT 6 C O4 DT 6 1_555 hydrog WATSON-CRICK D DC 8 B N3 DC 8 1_555 E DG 5 C N1 DG 5 1_555 hydrog WATSON-CRICK D DC 8 B N4 DC 8 1_555 E DG 5 C O6 DG 5 1_555 hydrog WATSON-CRICK D DC 8 B O2 DC 8 1_555 E DG 5 C N2 DG 5 1_555 hydrog WATSON-CRICK D DA 9 B N1 DA 9 1_555 E DT 4 C N3 DT 4 1_555 hydrog WATSON-CRICK D DA 9 B N6 DA 9 1_555 E DT 4 C O4 DT 4 1_555 hydrog WATSON-CRICK D DT 10 B N3 DT 10 1_555 E DA 3 C N1 DA 3 1_555 hydrog WATSON-CRICK D DT 10 B O4 DT 10 1_555 E DA 3 C N6 DA 3 1_555 hydrog WATSON-CRICK D DT 11 B N3 DT 11 1_555 E DA 2 C N1 DA 2 1_555 hydrog WATSON-CRICK D DT 11 B O4 DT 11 1_555 E DA 2 C N6 DA 2 1_555 hydrog WATSON-CRICK D DC 12 B N3 DC 12 1_555 E DG 1 C N1 DG 1 1_555 hydrog WATSON-CRICK D DC 12 B N4 DC 12 1_555 E DG 1 C O6 DG 1 1_555 hydrog WATSON-CRICK D DC 12 B O2 DC 12 1_555 E DG 1 C N2 DG 1 1_555 DNA BINDING PROTEIN/DNA TRANSCRIPTION FACTOR, DNA BINDING, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX, GLOBIN LOCUS, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex BC11B_HUMAN UNP 1 423 Q9C0K0 PAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKCQLCDHACSQASKLKRHMKTHMHKAGS 12UM PDB 2 1 12UM 12UM PDB 3 1 12UM 423 483 12UM 423 483 Q9C0K0 A 1 6 66 1 12 12UM 1 12 12UM D 2 1 12 1 12 12UM 1 12 12UM E 3 1 12 1 expression tag GLY 418 12UM A Q9C0K0 UNP 1 1 expression tag PRO 419 12UM A Q9C0K0 UNP 2 1 expression tag LEU 420 12UM A Q9C0K0 UNP 3 1 expression tag GLY 421 12UM A Q9C0K0 UNP 4 1 expression tag SER 422 12UM A Q9C0K0 UNP 5 2 2 anti-parallel anti-parallel A LYS 427 A LYS 10 A SER 428 A SER 11 A THR 435 A THR 18 A PHE 436 A PHE 19 A TYR 455 A TYR 38 A LYS 456 A LYS 39 A ALA 463 A ALA 46 A CYS 464 A CYS 47 170 P 65 P 65