0.010726 0.006193 0.000000 0.000000 0.012386 0.000000 0.000000 0.000000 0.009768 0.00000 0.00000 0.00000 Xu, X.C. Ren, A.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 93.228 93.228 102.372 C20 H24 N10 O13 P2 674.411 cGAMP 2',3' cGAMP; c-GMP-AMP; c[G(2',5')pA(3',5')p] non-polymer C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C10 H16 N5 O14 P3 523.180 n GUANOSINE-5'-TRIPHOSPHATE non-polymer H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking Y 1 N C N 2 N N Y 3 N C Y 4 N N Y 5 N N Y 6 N C Y 7 N C Y 8 N N Y 9 N C Y 10 N N N 11 R C N 12 R C N 13 N O N 14 S C N 15 R C N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 R C N 22 R C N 23 N O N 24 R C N 25 N C N 26 N O N 27 N P N 28 N O N 29 N O N 30 N O N 31 N O N 32 R C Y 33 N N Y 34 N C Y 35 N N Y 36 N C Y 37 N C N 38 N C N 39 N N N 40 N C N 41 N N N 42 N N N 43 N O N 44 N O N 45 N O N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N O N 71 N P N 72 N O N 73 N O N 74 N O N 75 N C N 76 R C N 77 N O N 78 S C N 79 N O N 80 R C N 81 N O N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C Y 87 N C N 88 N N Y 89 N N Y 90 N C Y 91 N N Y 92 N C N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N O N 108 N P N 109 N O N 110 N O N 111 N O N 112 N C N 113 R C N 114 N O N 115 S C N 116 N O N 117 R C N 118 N O N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N N N 126 N C N 127 N C N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N O N 143 N P N 144 N O N 145 N O N 146 N O N 147 N C N 148 R C N 149 N O N 150 S C N 151 N O N 152 R C N 153 N O N 154 R C Y 155 N N Y 156 N C Y 157 N N Y 158 N C N 159 N C N 160 N O N 161 N N N 162 N C N 163 N N N 164 N N Y 165 N C N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N P N 181 N O N 182 N O N 183 N O N 184 N O N 185 N P N 186 N O N 187 N O N 188 N O N 189 N P N 190 N O N 191 N O N 192 N O N 193 N C N 194 R C N 195 N O N 196 S C N 197 N O N 198 R C N 199 N O N 200 R C Y 201 N N Y 202 N C Y 203 N N Y 204 N C N 205 N C N 206 N O N 207 N N N 208 N C N 209 N N N 210 N N Y 211 N C N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N O N 229 N H N 230 N H N 231 N MG N 232 N O N 233 N P N 234 N O N 235 N O N 236 N O N 237 N C N 238 R C N 239 N O N 240 S C N 241 N O N 242 R C N 243 N O N 244 R C N 245 N N N 246 N C N 247 N O N 248 N N N 249 N C N 250 N O N 251 N C N 252 N C N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing Y 9 N doub Y 10 N sing Y 11 N sing N 12 N sing N 13 N sing Y 14 N sing N 15 N sing N 16 N sing N 17 N sing Y 18 N doub Y 19 N sing N 20 N sing Y 21 N sing N 22 N sing N 23 N doub Y 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing Y 30 N doub N 31 N sing N 32 N sing Y 33 N sing N 34 N sing Y 35 N doub Y 36 N sing N 37 N doub N 38 N sing N 39 N sing N 40 N sing N 41 N sing Y 42 N sing Y 43 N sing N 44 N sing Y 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing Y 105 N sing Y 106 N doub N 107 N sing Y 108 N doub N 109 N sing N 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing Y 175 N sing Y 176 N sing Y 177 N doub N 178 N sing Y 179 N sing N 180 N sing Y 181 N doub N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing Y 225 N sing Y 226 N sing Y 227 N doub N 228 N sing Y 229 N sing N 230 N sing Y 231 N doub N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N doub N 276 N sing N 277 N sing To Be Published 0353 Crystal structure of a variant c-di-GMP-II Riboswitch BhP1-5delC A9G/U55C bound with 2',3'-cGAMP 10.2210/pdb22mx/pdb pdb_000022mx 100 1 N PIXEL 2022-11-22 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 1.10202 1.0 BL19U1 SSRF 1.10202 SYNCHROTRON SSRF BEAMLINE BL19U1 25008.719 RNA (77-MER) A9G/U55C 2 man polymer 674.411 cGAMP 2 syn non-polymer 24.305 MAGNESIUM ION 3 syn non-polymer 18.015 water 17 nat water no yes (GTP)GAUAGGGAGGCAACGAAGCAUAGCCUUUAUAUGGACACUUGGGUUAUGUGGAGCCACUAGUGUAACCGGCCCUCU C GGAUAGGGAGGCAACGAAGCAUAGCCUUUAUAUGGACACUUGGGUUAUGUGGAGCCACUAGUGUAACCGGCCCUCUC A,B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 77 272558 Halalkalibacterium halodurans C-125 905931 in vitro transcription vector pT7-TP(deltai) Biological sequence 1 2.58 52.25 VAPOR DIFFUSION, SITTING DROP 0.2M NH4Ac, 0.1M Tris 8.5, 45% MPD 289 -10.573 1 19 A 1 A 76 -7.552 A_G1:C76_A 1 -3.096 0.831 -0.184 0.079 -4.933 1 20 A 2 A 75 -6.683 A_A2:U75_A 2 -26.991 -0.194 -0.305 -0.148 -14.955 A 3 A 74 -7.231 A_U3:C74_A 3 -25.269 0.356 -0.863 -0.831 -13.296 1 20 A 4 A 73 -1.633 A_A4:U73_A 4 -3.251 -0.237 0.085 -0.213 -3.129 1 19 A 5 A 72 0.240 A_G5:C72_A 5 -2.181 -0.485 0.014 -0.038 -2.852 1 19 A 6 A 71 -2.903 A_G6:C71_A 6 -3.675 -0.186 0.119 -0.327 -16.543 1 19 A 7 A 70 -7.047 A_G7:C70_A 7 -22.578 -0.370 0.036 -0.179 -13.369 1 8 A 8 A 69 -25.001 A_A8:G69_A 8 -17.866 -0.060 -0.310 1.374 -1.593 1 19 A 9 A 55 -1.494 A_G9:C55_A 9 0.509 -1.019 -0.307 -0.361 6.901 1 19 A 10 A 54 -3.365 A_G10:C54_A 10 -1.677 -0.362 -0.175 -0.175 -3.295 1 19 A 11 A 53 -3.815 A_C11:G53_A 11 -1.798 -0.270 -0.422 -0.222 23.000 9 11 A 15 A 52 -0.818 A_G15:A52_A 12 28.063 6.672 0.446 -4.327 -26.188 10 11 A 16 A 51 -2.079 A_A16:G51_A 13 5.740 -6.544 0.743 -4.687 8.216 5 11 A 17 A 50 4.689 A_A17:G50_A 14 -11.634 -6.803 0.063 -4.189 -1.224 1 28 A 18 A 49 5.272 A_G18:U49_A 15 -20.158 -2.542 -0.561 -0.230 12.043 1 19 A 19 A 48 2.001 A_C19:G48_A 16 -24.928 0.158 -0.300 -0.291 -5.732 1 20 A 20 A 47 5.086 A_A20:U47_A 17 -9.397 -0.311 0.039 -0.173 10.075 1 20 A 21 A 46 6.822 A_U21:A46_A 18 -5.013 0.096 -0.263 0.048 0.678 1 20 A 22 A 45 -1.987 A_A22:U45_A 19 -19.786 0.025 -0.316 -0.175 -8.672 1 28 A 23 A 44 6.652 A_G23:U44_A 20 -2.676 -2.269 -0.182 -0.116 3.184 1 19 A 24 A 43 0.698 A_C24:G43_A 21 -4.523 1.164 0.662 -0.593 2.650 1 19 A 25 A 42 -5.924 A_C25:G42_A 22 -12.297 0.241 0.046 -0.426 -5.034 1 28 A 26 A 41 -1.628 A_U26:G41_A 23 -10.930 2.541 -0.289 -0.568 -5.394 4 24 A 29 A 40 -92.889 A_A29:U40_A 24 -11.540 -4.222 -0.634 -2.132 -5.008 1 20 A 59 A 39 -7.745 A_A59:U39_A 25 -16.988 -0.516 0.334 -0.008 -2.438 1 19 A 60 A 38 -11.684 A_G60:C38_A 26 -15.613 0.018 0.493 -0.128 -2.009 1 20 A 61 A 37 0.547 A_U61:A37_A 27 -21.626 0.251 0.098 -0.030 -11.034 1 19 A 62 A 36 -2.846 A_G62:C36_A 28 -4.116 0.161 0.647 -0.047 2.020 1 20 A 63 A 35 2.330 A_U63:A35_A 29 -8.151 -0.249 -0.454 -0.270 -15.530 1 20 A 64 A 32 -3.181 A_A64:U32_A 30 5.344 -0.221 0.143 0.464 11.099 1 19 A 66 A 34 7.888 A_C66:G34_A 31 -5.376 -0.226 0.248 0.047 8.812 1 19 A 67 A 33 -4.134 A_C67:G33_A 32 -10.533 -0.164 -0.126 -0.277 -15.537 1 19 B 1 B 76 -1.264 B_G1:C76_B 33 -2.959 -0.186 -0.520 -0.255 -6.289 1 20 B 2 B 75 12.537 B_A2:U75_B 34 -9.090 0.073 0.151 0.184 -3.163 B 3 B 74 -7.042 B_U3:C74_B 35 -15.497 -0.364 -0.203 -0.780 -16.374 1 20 B 4 B 73 7.521 B_A4:U73_B 36 -10.858 -0.410 -0.164 0.003 -6.312 1 19 B 5 B 72 1.953 B_G5:C72_B 37 -5.491 -0.145 0.050 -0.083 -0.420 1 19 B 6 B 71 -0.717 B_G6:C71_B 38 -10.571 -0.099 0.325 -0.304 -17.865 1 19 B 7 B 70 -0.350 B_G7:C70_B 39 -23.353 -0.107 -0.143 -0.211 -9.867 1 8 B 8 B 69 -21.761 B_A8:G69_B 40 -8.939 0.553 -0.616 1.715 -4.557 1 B 9 B 55 7.635 B_G9:C55_B 41 4.701 -0.456 -0.062 0.575 2.279 1 19 B 10 B 54 -2.664 B_G10:C54_B 42 -4.837 0.337 -0.186 -0.287 1.191 1 19 B 11 B 53 -1.232 B_C11:G53_B 43 6.602 0.125 -0.385 0.031 18.390 9 11 B 15 B 52 10.150 B_G15:A52_B 44 33.034 6.428 1.092 -4.411 -18.852 10 11 B 16 B 51 1.045 B_A16:G51_B 45 13.715 -6.304 1.221 -5.070 11.638 10 11 B 17 B 50 -8.355 B_A17:G50_B 46 -4.802 -6.702 -0.243 -3.821 4.323 1 28 B 18 B 49 -4.823 B_G18:U49_B 47 -12.722 -2.415 0.118 -0.480 1.306 1 19 B 19 B 48 0.244 B_C19:G48_B 48 -18.934 0.213 0.285 0.065 1.004 1 20 B 20 B 47 1.981 B_A20:U47_B 49 -5.086 -0.404 0.298 -0.008 3.076 1 20 B 21 B 46 3.384 B_U21:A46_B 50 -7.239 0.271 0.007 -0.043 -8.843 1 20 B 22 B 45 0.625 B_A22:U45_B 51 -13.841 -0.114 0.085 -0.027 -0.860 1 28 B 23 B 44 3.698 B_G23:U44_B 52 -4.405 -2.350 0.166 -0.570 7.165 1 19 B 24 B 43 -1.754 B_C24:G43_B 53 -15.121 0.927 0.009 -0.244 5.877 1 19 B 25 B 42 -0.090 B_C25:G42_B 54 -6.050 0.127 -0.085 -0.237 -0.380 1 28 B 26 B 41 -0.368 B_U26:G41_B 55 -14.590 2.776 -0.285 -0.673 -7.366 4 24 B 29 B 40 -95.508 B_A29:U40_B 56 -2.824 -4.353 -0.324 -2.065 -1.892 1 20 B 59 B 39 -5.321 B_A59:U39_B 57 -12.444 0.017 0.116 -0.101 -6.315 1 19 B 60 B 38 -3.592 B_G60:C38_B 58 -12.161 0.204 0.298 0.160 -2.884 1 20 B 61 B 37 -3.574 B_U61:A37_B 59 -11.369 0.726 0.200 -0.138 -11.361 1 19 B 62 B 36 -1.686 B_G62:C36_B 60 -12.302 0.718 -0.159 0.185 2.174 1 20 B 63 B 35 -6.553 B_U63:A35_B 61 2.223 -0.611 -0.286 -0.338 -6.535 1 20 B 64 B 32 -3.613 B_A64:U32_B 62 -3.576 0.162 -0.555 0.301 18.510 1 19 B 66 B 34 -0.978 B_C66:G34_B 63 -8.160 -0.105 -0.043 0.063 10.930 1 19 B 67 B 33 0.739 B_C67:G33_B 64 -17.108 -0.285 -0.103 -0.195 1.884 29.124 A A 1 2 31.099 A A 76 75 3.222 14.884 -0.211 -1.788 AA_G1A2:U75C76_AA 1 -3.548 7.414 24.855 -6.306 -0.237 3.141 38.389 A A 2 3 14.585 A A 75 74 3.668 9.496 -0.452 -1.701 AA_A2U3:C74U75_AA 2 1.205 -1.850 37.220 -3.840 0.847 2.315 31.321 A A 3 4 17.266 A A 74 73 3.289 8.953 0.487 -1.432 AA_U3A4:U73C74_AA 3 -12.106 23.346 27.544 -4.200 -2.993 2.426 31.429 A A 4 5 10.526 A A 73 72 2.865 5.670 -0.339 -2.123 AA_A4G5:C72U73_AA 4 1.601 -2.973 30.886 -4.786 0.871 2.700 31.323 A A 5 6 15.093 A A 72 71 3.265 8.061 0.653 -1.775 AA_G5G6:C71C72_AA 5 -0.643 1.204 30.287 -4.699 -1.321 3.364 34.897 A A 6 7 9.526 A A 71 70 3.737 5.672 0.360 -2.155 AA_G6G7:C70C71_AA 6 4.801 -8.064 34.120 -4.537 0.199 2.484 40.709 A A 7 8 15.944 A A 70 69 3.051 10.935 -0.838 -1.289 AA_G7A8:G69C70_AA 7 5.337 -7.781 38.922 -2.902 1.717 3.372 34.482 A A 9 10 -0.156 A A 55 54 3.368 -0.092 -0.071 -2.063 AA_G9G10:C54C55_AA 8 -1.931 3.260 34.429 -3.465 -0.190 2.742 30.162 A A 10 11 17.521 A A 54 53 3.580 8.967 0.465 -2.446 AA_G10C11:G53C54_AA 9 3.366 -6.577 28.635 -6.514 -0.213 1.195 -17.360 A A 15 16 55.206 A A 52 51 4.979 -13.942 -0.887 -1.453 AA_G15A16:G51A52_AA 10 -4.985 -19.737 -9.088 15.563 -6.783 2.982 32.247 A A 16 17 12.367 A A 51 50 2.956 6.664 -0.481 0.578 AA_A16A17:G50G51_AA 11 -11.886 22.059 29.296 -0.091 -1.151 3.644 56.278 A A 17 18 8.536 A A 50 49 3.810 8.022 0.467 -0.683 AA_A17G18:U49G50_AA 12 -4.371 4.652 55.592 -1.246 -0.779 2.834 41.407 A A 18 19 6.721 A A 49 48 2.951 4.740 -0.079 -0.908 AA_G18C19:G48U49_AA 13 -2.337 3.313 41.083 -1.734 -0.110 2.792 33.732 A A 19 20 22.228 A A 48 47 3.673 12.559 -0.058 -1.652 AA_C19A20:U47G48_AA 14 -4.825 8.539 31.005 -4.954 -0.709 2.136 33.709 A A 20 21 24.019 A A 47 46 2.810 13.526 0.066 -1.121 AA_A20U21:A46U47_AA 15 3.814 -6.773 30.718 -3.678 0.379 2.689 36.437 A A 21 22 26.684 A A 46 45 3.565 16.133 0.197 -1.239 AA_U21A22:U45A46_AA 16 2.119 -3.505 32.713 -4.247 -0.017 1.789 26.802 A A 22 23 28.383 A A 45 44 3.215 12.456 0.161 -1.896 AA_A22G23:U44U45_AA 17 -7.760 17.682 22.489 -6.779 -2.023 3.008 46.450 A A 23 24 1.121 A A 44 43 3.014 0.881 -0.335 -1.150 AA_G23C24:G43U44_AA 18 -7.705 9.810 45.833 -1.527 -0.178 2.703 25.360 A A 24 25 8.573 A A 43 42 3.142 3.746 -0.806 -2.233 AA_C24C25:G42G43_AA 19 2.206 -5.050 24.990 -6.060 2.411 3.550 40.816 A A 25 26 6.767 A A 42 41 3.763 4.703 -0.022 -1.556 AA_C25U26:G41G42_AA 20 3.880 -5.582 40.378 -2.813 0.511 2.783 71.889 A A 29 59 7.826 A A 40 39 3.383 9.141 3.143 -1.126 AA_A29A59:U39U40_AA 21 -11.143 9.540 70.621 -1.252 -3.034 2.960 35.105 A A 59 60 4.761 A A 39 38 3.090 2.863 -0.115 -1.455 AA_A59G60:C38U39_AA 22 -3.792 6.306 34.792 -2.810 -0.337 2.972 34.670 A A 60 61 5.298 A A 38 37 3.135 3.151 0.248 -1.813 AA_G60U61:A37C38_AA 23 2.584 -4.346 34.437 -3.496 -0.044 3.058 35.984 A A 61 62 9.009 A A 37 36 3.339 5.522 -0.241 -1.614 AA_U61G62:C36A37_AA 24 -5.743 9.369 35.119 -3.392 -0.420 3.140 32.480 A A 62 63 -5.962 A A 36 35 3.114 -3.190 0.702 -0.942 AA_G62U63:A35C36_AA 25 16.009 -29.919 28.176 -1.108 1.631 -0.282 177.697 A A 63 64 -89.174 A A 35 32 -0.445 -176.292 3.072 0.625 AA_U63A64:U32A35_AA 26 22.195 -11.227 12.144 -0.012 -1.577 -0.613 -175.020 A A 64 66 87.842 A A 32 34 -0.147 -173.004 -3.296 -1.004 AA_A64C66:G34U32_AA 27 19.074 9.684 -66.255 0.298 -1.672 3.027 40.412 A A 66 67 2.491 A A 34 33 3.099 1.720 -0.020 -1.661 AA_C66C67:G33G34_AA 28 1.158 -1.678 40.361 -2.585 0.150 2.231 33.681 B B 1 2 18.140 B B 76 75 3.026 10.253 0.376 -1.637 BB_G1A2:U75C76_BB 29 -7.975 14.110 31.143 -4.222 -1.736 2.837 32.911 B B 2 3 9.333 B B 75 74 3.139 5.266 -1.233 -1.699 BB_A2U3:C74U75_BB 30 -0.034 0.059 32.499 -3.825 2.170 2.730 32.931 B B 3 4 25.589 B B 74 73 3.624 14.064 1.244 -1.345 BB_U3A4:U73C74_BB 31 -0.051 0.093 29.852 -4.822 -2.203 2.757 34.442 B B 4 5 9.858 B B 73 72 3.019 5.807 -0.522 -1.506 BB_A4G5:C72U73_BB 32 -2.063 3.502 33.902 -3.347 0.596 2.745 30.403 B B 5 6 9.824 B B 72 71 3.110 5.128 0.469 -1.968 BB_G5G6:C71C72_BB 33 0.090 -0.172 29.977 -4.679 -0.878 2.877 35.743 B B 6 7 17.546 B B 71 70 3.599 10.539 0.356 -1.969 BB_G6G7:C70C71_BB 34 7.510 -12.502 33.390 -4.770 0.533 2.678 38.772 B B 7 8 9.260 B B 70 69 3.086 6.103 -1.267 -1.092 BB_G7A8:G69C70_BB 35 5.613 -8.516 37.909 -2.310 2.520 3.224 31.884 B B 9 10 4.776 B B 55 54 3.390 2.621 -0.423 -1.883 BB_G9G10:C54C55_BB 36 0.341 -0.621 31.777 -3.912 0.834 3.629 28.684 B B 10 11 -3.836 B B 54 53 3.434 -1.897 0.704 -2.440 BB_G10C11:G53C54_BB 37 2.269 -4.589 28.534 -4.463 -0.867 0.148 -30.865 B B 15 16 61.188 B B 52 51 4.743 -26.721 -1.210 -2.183 BB_G15A16:G51A52_BB 38 -5.686 -13.021 -14.500 9.470 -3.416 2.896 39.033 B B 16 17 20.579 B B 51 50 3.041 13.388 -0.646 -0.112 BB_A16A17:G50G51_BB 39 -8.257 12.692 35.837 -1.702 0.021 3.445 53.151 B B 17 18 1.664 B B 50 49 3.606 1.485 0.807 -1.520 BB_A17G18:U49G50_BB 40 -6.743 7.555 52.733 -1.802 -1.368 3.171 41.197 B B 18 19 5.625 B B 49 48 3.330 3.952 -0.285 -1.638 BB_G18C19:G48U49_BB 41 -0.916 1.304 41.005 -2.753 0.307 2.237 31.409 B B 19 20 21.859 B B 48 47 3.038 11.566 0.022 -1.649 BB_C19A20:U47G48_BB 42 -1.058 2.000 29.233 -4.862 -0.207 2.836 33.812 B B 20 21 16.100 B B 47 46 3.283 9.223 0.054 -1.154 BB_A20U21:A46U47_BB 43 4.620 -8.065 32.244 -3.413 0.624 2.247 34.886 B B 21 22 29.205 B B 46 45 3.339 16.819 0.626 -1.451 BB_U21A22:U45A46_BB 44 -0.842 1.462 30.663 -4.750 -1.161 2.312 23.119 B B 22 23 13.941 B B 45 44 2.874 5.508 -0.051 -1.908 BB_A22G23:U44U45_BB 45 -3.912 9.901 22.123 -6.317 -0.977 2.931 46.757 B B 23 24 7.676 B B 44 43 3.088 6.076 -0.466 -1.147 BB_G23C24:G43U44_BB 46 -0.762 0.963 46.377 -1.913 0.529 3.234 26.140 B B 24 25 2.863 B B 43 42 3.324 1.293 -0.276 -2.009 BB_C24C25:G42G43_BB 47 -1.707 3.779 26.054 -4.795 0.145 3.185 39.649 B B 25 26 11.572 B B 42 41 3.581 7.790 -0.234 -1.558 BB_C25U26:G41G42_BB 48 3.801 -5.645 38.727 -3.251 0.810 2.812 74.988 B B 29 59 6.996 B B 40 39 3.364 8.481 3.115 -1.269 BB_A29A59:U39U40_BB 49 -10.878 8.973 73.893 -1.290 -2.876 3.168 36.931 B B 59 60 7.347 B B 39 38 3.334 4.642 0.061 -1.161 BB_A59G60:C38U39_BB 50 -0.497 0.787 36.645 -2.458 -0.164 3.254 34.936 B B 60 61 1.061 B B 38 37 3.285 0.637 -0.026 -1.675 BB_G60U61:A37C38_BB 51 0.218 -0.364 34.930 -2.886 0.076 2.778 35.416 B B 61 62 14.255 B B 37 36 3.322 8.517 0.010 -1.581 BB_U61G62:C36A37_BB 52 8.083 -13.528 33.471 -3.801 1.125 3.199 23.869 B B 62 63 -21.624 B B 36 35 3.032 -8.667 0.574 -0.896 BB_G62U63:A35C36_BB 53 5.245 -13.085 21.640 0.668 0.327 0.137 174.805 B B 63 64 -88.323 B B 35 32 -1.090 -173.057 3.277 -0.136 BB_U63A64:U32A35_BB 54 22.086 -11.272 40.560 -0.397 -1.682 0.588 174.959 B B 64 66 -86.811 B B 32 34 0.400 -171.717 -2.944 -0.702 BB_A64C66:G34U32_BB 55 15.424 -7.798 96.749 -0.164 1.490 2.772 38.963 B B 66 67 12.188 B B 34 33 3.166 8.075 0.784 -1.637 BB_C66C67:G33G34_BB 56 -0.187 0.283 38.149 -3.352 -1.196 repository Initial release 1 0 2026-10-21 China National Natural Science Foundation of China (NSFC) aimingren@zju.edu.cn 0000-0002-5420-4899 Aiming Ren principal investigator/group leader N PDBJ Y PDBJ 2026-01-16 REL REL 1SY 1SY SUBJECT OF INVESTIGATION 1SY cGAMP MG MAGNESIUM ION HOH water Y N 3Q3Z PDB experimental model 1SY 1 2 1SY 1SY 101 A MG 1 3 MG MG 102 A MG 2 3 MG MG 103 A 1SY 2 2 1SY 1SY 101 B MG 3 3 MG MG 102 B HOH 12 4 HOH HOH 201 A HOH 13 4 HOH HOH 202 A HOH 10 4 HOH HOH 203 A HOH 11 4 HOH HOH 204 A HOH 6 4 HOH HOH 205 A HOH 1 4 HOH HOH 206 A HOH 2 4 HOH HOH 207 A HOH 9 4 HOH HOH 208 A HOH 5 4 HOH HOH 209 A HOH 7 4 HOH HOH 210 A HOH 17 4 HOH HOH 201 B HOH 4 4 HOH HOH 202 B HOH 15 4 HOH HOH 203 B HOH 16 4 HOH HOH 204 B HOH 3 4 HOH HOH 205 B HOH 8 4 HOH HOH 206 B HOH 14 4 HOH HOH 207 B GTP 0 n 1 GTP 0 A G 1 n 2 G 1 A A 2 n 3 A 2 A U 3 n 4 U 3 A A 4 n 5 A 4 A G 5 n 6 G 5 A G 6 n 7 G 6 A G 7 n 8 G 7 A A 8 n 9 A 8 A G 9 n 10 G 9 A G 10 n 11 G 10 A C 11 n 12 C 11 A A 12 n 13 A 12 A A 13 n 14 A 13 A C 14 n 15 C 14 A G 15 n 16 G 15 A A 16 n 17 A 16 A A 17 n 18 A 17 A G 18 n 19 G 18 A C 19 n 20 C 19 A A 20 n 21 A 20 A U 21 n 22 U 21 A A 22 n 23 A 22 A G 23 n 24 G 23 A C 24 n 25 C 24 A C 25 n 26 C 25 A U 26 n 27 U 26 A U 27 n 28 U 27 A U 28 n 29 U 28 A A 29 n 30 A 29 A U 30 n 31 U 30 A A 31 n 32 A 31 A U 32 n 33 U 32 A G 33 n 34 G 33 A G 34 n 35 G 34 A A 35 n 36 A 35 A C 36 n 37 C 36 A A 37 n 38 A 37 A C 38 n 39 C 38 A U 39 n 40 U 39 A U 40 n 41 U 40 A G 41 n 42 G 41 A G 42 n 43 G 42 A G 43 n 44 G 43 A U 44 n 45 U 44 A U 45 n 46 U 45 A A 46 n 47 A 46 A U 47 n 48 U 47 A G 48 n 49 G 48 A U 49 n 50 U 49 A G 50 n 51 G 50 A G 51 n 52 G 51 A A 52 n 53 A 52 A G 53 n 54 G 53 A C 54 n 55 C 54 A C 55 n 56 C 55 A A 56 n 57 A 56 A C 57 n 58 C 57 A U 58 n 59 U 58 A A 59 n 60 A 59 A G 60 n 61 G 60 A U 61 n 62 U 61 A G 62 n 63 G 62 A U 63 n 64 U 63 A A 64 n 65 A 64 A A 65 n 66 A 65 A C 66 n 67 C 66 A C 67 n 68 C 67 A G 68 n 69 G 68 A G 69 n 70 G 69 A C 70 n 71 C 70 A C 71 n 72 C 71 A C 72 n 73 C 72 A U 73 n 74 U 73 A C 74 n 75 C 74 A U 75 n 76 U 75 A C 76 n 77 C 76 A GTP 0 n 1 GTP 0 B G 1 n 2 G 1 B A 2 n 3 A 2 B U 3 n 4 U 3 B A 4 n 5 A 4 B G 5 n 6 G 5 B G 6 n 7 G 6 B G 7 n 8 G 7 B A 8 n 9 A 8 B G 9 n 10 G 9 B G 10 n 11 G 10 B C 11 n 12 C 11 B A 12 n 13 A 12 B A 13 n 14 A 13 B C 14 n 15 C 14 B G 15 n 16 G 15 B A 16 n 17 A 16 B A 17 n 18 A 17 B G 18 n 19 G 18 B C 19 n 20 C 19 B A 20 n 21 A 20 B U 21 n 22 U 21 B A 22 n 23 A 22 B G 23 n 24 G 23 B C 24 n 25 C 24 B C 25 n 26 C 25 B U 26 n 27 U 26 B U 27 n 28 U 27 B U 28 n 29 U 28 B A 29 n 30 A 29 B U 30 n 31 U 30 B A 31 n 32 A 31 B U 32 n 33 U 32 B G 33 n 34 G 33 B G 34 n 35 G 34 B A 35 n 36 A 35 B C 36 n 37 C 36 B A 37 n 38 A 37 B C 38 n 39 C 38 B U 39 n 40 U 39 B U 40 n 41 U 40 B G 41 n 42 G 41 B G 42 n 43 G 42 B G 43 n 44 G 43 B U 44 n 45 U 44 B U 45 n 46 U 45 B A 46 n 47 A 46 B U 47 n 48 U 47 B G 48 n 49 G 48 B U 49 n 50 U 49 B G 50 n 51 G 50 B G 51 n 52 G 51 B A 52 n 53 A 52 B G 53 n 54 G 53 B C 54 n 55 C 54 B C 55 n 56 C 55 B A 56 n 57 A 56 B C 57 n 58 C 57 B U 58 n 59 U 58 B A 59 n 60 A 59 B G 60 n 61 G 60 B U 61 n 62 U 61 B G 62 n 63 G 62 B U 63 n 64 U 63 B A 64 n 65 A 64 B A 65 n 66 A 65 B C 66 n 67 C 66 B C 67 n 68 C 67 B G 68 n 69 G 68 B G 69 n 70 G 69 B C 70 n 71 C 70 B C 71 n 72 C 71 B C 72 n 73 C 72 B U 73 n 74 U 73 B C 74 n 75 C 74 B U 75 n 76 U 75 B C 76 n 77 C 76 B author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric none 360 -8 12720 290 -5 12780 A A 56 A OP1 A 57 1_555 A MG 102 D MG MG 1_555 A C 57 A OP2 C 58 1_555 144.5 A A 56 A OP1 A 57 1_555 A MG 102 D MG MG 1_555 A U 58 A O4 U 59 1_555 96.2 A C 57 A OP2 C 58 1_555 A MG 102 D MG MG 1_555 A U 58 A O4 U 59 1_555 101.7 A A 56 A OP1 A 57 1_555 A MG 102 D MG MG 1_555 A HOH 201 H O HOH 1_555 144.8 A C 57 A OP2 C 58 1_555 A MG 102 D MG MG 1_555 A HOH 201 H O HOH 1_555 70.5 A U 58 A O4 U 59 1_555 A MG 102 D MG MG 1_555 A HOH 201 H O HOH 1_555 62.6 A A 56 A OP1 A 57 1_555 A MG 102 D MG MG 1_555 A HOH 202 H O HOH 1_555 84.4 A C 57 A OP2 C 58 1_555 A MG 102 D MG MG 1_555 A HOH 202 H O HOH 1_555 129.9 A U 58 A O4 U 59 1_555 A MG 102 D MG MG 1_555 A HOH 202 H O HOH 1_555 74.2 A HOH 201 H O HOH 1_555 A MG 102 D MG MG 1_555 A HOH 202 H O HOH 1_555 63.5 A C 76 A O3' C 77 1_555 A MG 103 E MG MG 1_555 A C 76 A O2' C 77 1_555 76.3 A C 76 A O3' C 77 1_555 A MG 103 E MG MG 1_555 B GTP 0 B N2 GTP 1 1_555 90.4 A C 76 A O2' C 77 1_555 A MG 103 E MG MG 1_555 B GTP 0 B N2 GTP 1 1_555 82.7 B C 57 B OP2 C 58 1_555 B MG 102 G MG MG 1_555 B U 58 B O4 U 59 1_555 77.5 B C 57 B OP2 C 58 1_555 B MG 102 G MG MG 1_555 B HOH 204 I O HOH 1_555 70.9 B U 58 B O4 U 59 1_555 B MG 102 G MG MG 1_555 B HOH 204 I O HOH 1_555 140.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B PG GTP 0 B PG GTP 1 1 Y 1 B O1G GTP 0 B O1G GTP 1 1 Y 1 B O2G GTP 0 B O2G GTP 1 1 Y 1 B O3G GTP 0 B O3G GTP 1 1 Y 1 B O3B GTP 0 B O3B GTP 1 1 Y 1 B PB GTP 0 B PB GTP 1 1 Y 1 B O1B GTP 0 B O1B GTP 1 1 Y 1 B O2B GTP 0 B O2B GTP 1 1 Y 1 B O2A GTP 0 B O2A GTP 1 1 Y 1 10.23 1.10 110.50 120.73 A A A O3' P OP2 GTP G G 0 1 1 Y 0.2585 0.1972 0.2034 2.90 31.70 1118 11215 9.97 99.58 0.36 1 THROUGHOUT 1.49 MOLECULAR REPLACEMENT 32.22 0.90 1.11 ML FLAT BULK SOLVENT MODEL 2.90 31.70 17 3413 93 3303 0 0.006 3794 1.153 5913 17.382 1928 0.050 789 0.007 162 0.4015 0.3243 3.03 139 1262 100.00 0.3470 0.2382 3.19 139 1242 100.00 0.2652 0.2101 3.39 141 1258 99.00 0.2991 0.1868 3.65 136 1261 99.00 0.2942 0.2110 4.02 135 1255 100.00 0.2647 0.1947 4.60 147 1261 100.00 0.2143 0.1799 5.79 139 1276 100.00 0.1879 0.1607 31.70 142 1282 99.00 2.9 80.8 22MX 11215 1.0 1 12.8 18.9 100.0 2.9 3.1 11215 1.0 1 refinement PHENIX (1.18.2_3874: ???) data scaling HKL-3000 data extraction PDB_EXTRACT data reduction HKL-3000 phasing PHASER N Crystal structure of a variant c-di-GMP-II Riboswitch c-di-GMP-II-Bh_A9G/U55C bound with 2',3'-cGAMP 1 N N 1 N N 2 N N 3 N N 3 N N 2 N N 3 N N 4 N N 4 N N covale 1.562 both A GTP 0 A O3' GTP 1 1_555 A G 1 A P G 2 1_555 covale 1.619 both B GTP 0 B O3' GTP 1 1_555 B G 1 B P G 2 1_555 metalc 2.110 A A 56 A OP1 A 57 1_555 A MG 102 D MG MG 1_555 metalc 1.876 A C 57 A OP2 C 58 1_555 A MG 102 D MG MG 1_555 metalc 2.451 A U 58 A O4 U 59 1_555 A MG 102 D MG MG 1_555 metalc 2.285 A C 76 A O3' C 77 1_555 A MG 103 E MG MG 1_555 metalc 2.019 A C 76 A O2' C 77 1_555 A MG 103 E MG MG 1_555 metalc 2.504 A MG 102 D MG MG 1_555 A HOH 201 H O HOH 1_555 metalc 1.935 A MG 102 D MG MG 1_555 A HOH 202 H O HOH 1_555 metalc 2.985 A MG 103 E MG MG 3_455 B GTP 0 B N2 GTP 1 1_555 metalc 2.909 B C 57 B OP2 C 58 1_555 B MG 102 G MG MG 1_555 metalc 2.465 B U 58 B O4 U 59 1_555 B MG 102 G MG MG 1_555 metalc 2.926 B MG 102 G MG MG 1_555 B HOH 204 I O HOH 1_555 hydrog WATSON-CRICK A G 1 A N1 G 2 1_555 A C 76 A N3 C 77 1_555 hydrog WATSON-CRICK A G 1 A N2 G 2 1_555 A C 76 A O2 C 77 1_555 hydrog WATSON-CRICK A G 1 A O6 G 2 1_555 A C 76 A N4 C 77 1_555 hydrog WATSON-CRICK A A 2 A N1 A 3 1_555 A U 75 A N3 U 76 1_555 hydrog WATSON-CRICK A A 2 A N6 A 3 1_555 A U 75 A O4 U 76 1_555 hydrog U-C MISPAIR A U 3 A O4 U 4 1_555 A C 74 A N4 C 75 1_555 hydrog WATSON-CRICK A A 4 A N1 A 5 1_555 A U 73 A N3 U 74 1_555 hydrog WATSON-CRICK A A 4 A N6 A 5 1_555 A U 73 A O4 U 74 1_555 hydrog WATSON-CRICK A G 5 A N1 G 6 1_555 A C 72 A N3 C 73 1_555 hydrog WATSON-CRICK A G 5 A N2 G 6 1_555 A C 72 A O2 C 73 1_555 hydrog WATSON-CRICK A G 5 A O6 G 6 1_555 A C 72 A N4 C 73 1_555 hydrog WATSON-CRICK A G 6 A N1 G 7 1_555 A C 71 A N3 C 72 1_555 hydrog WATSON-CRICK A G 6 A N2 G 7 1_555 A C 71 A O2 C 72 1_555 hydrog WATSON-CRICK A G 6 A O6 G 7 1_555 A C 71 A N4 C 72 1_555 hydrog WATSON-CRICK A G 7 A N1 G 8 1_555 A C 70 A N3 C 71 1_555 hydrog WATSON-CRICK A G 7 A N2 G 8 1_555 A C 70 A O2 C 71 1_555 hydrog WATSON-CRICK A G 7 A O6 G 8 1_555 A C 70 A N4 C 71 1_555 hydrog TYPE_8_PAIR A A 8 A N1 A 9 1_555 A G 69 A N1 G 70 1_555 hydrog TYPE_8_PAIR A A 8 A N6 A 9 1_555 A G 69 A O6 G 70 1_555 hydrog WATSON-CRICK A G 9 A N1 G 10 1_555 A C 55 A N3 C 56 1_555 hydrog WATSON-CRICK A G 9 A N2 G 10 1_555 A C 55 A O2 C 56 1_555 hydrog WATSON-CRICK A G 9 A O6 G 10 1_555 A C 55 A N4 C 56 1_555 hydrog WATSON-CRICK A G 10 A N1 G 11 1_555 A C 54 A N3 C 55 1_555 hydrog WATSON-CRICK A G 10 A N2 G 11 1_555 A C 54 A O2 C 55 1_555 hydrog WATSON-CRICK A G 10 A O6 G 11 1_555 A C 54 A N4 C 55 1_555 hydrog WATSON-CRICK A C 11 A N3 C 12 1_555 A G 53 A N1 G 54 1_555 hydrog WATSON-CRICK A C 11 A N4 C 12 1_555 A G 53 A O6 G 54 1_555 hydrog WATSON-CRICK A C 11 A O2 C 12 1_555 A G 53 A N2 G 54 1_555 hydrog TYPE_11_PAIR A G 15 A N2 G 16 1_555 A A 52 A N7 A 53 1_555 hydrog TYPE_11_PAIR A G 15 A N3 G 16 1_555 A A 52 A N6 A 53 1_555 hydrog TYPE_11_PAIR A A 16 A N6 A 17 1_555 A G 51 A N3 G 52 1_555 hydrog TYPE_11_PAIR A A 16 A N7 A 17 1_555 A G 51 A N2 G 52 1_555 hydrog TYPE_11_PAIR A A 17 A N6 A 18 1_555 A G 50 A N3 G 51 1_555 hydrog TYPE_11_PAIR A A 17 A N7 A 18 1_555 A G 50 A N2 G 51 1_555 hydrog TYPE_28_PAIR A G 18 A N1 G 19 1_555 A U 49 A O2 U 50 1_555 hydrog TYPE_28_PAIR A G 18 A O6 G 19 1_555 A U 49 A N3 U 50 1_555 hydrog WATSON-CRICK A C 19 A N3 C 20 1_555 A G 48 A N1 G 49 1_555 hydrog WATSON-CRICK A C 19 A N4 C 20 1_555 A G 48 A O6 G 49 1_555 hydrog WATSON-CRICK A C 19 A O2 C 20 1_555 A G 48 A N2 G 49 1_555 hydrog WATSON-CRICK A A 20 A N1 A 21 1_555 A U 47 A N3 U 48 1_555 hydrog WATSON-CRICK A A 20 A N6 A 21 1_555 A U 47 A O4 U 48 1_555 hydrog WATSON-CRICK A U 21 A N3 U 22 1_555 A A 46 A N1 A 47 1_555 hydrog WATSON-CRICK A U 21 A O4 U 22 1_555 A A 46 A N6 A 47 1_555 hydrog WATSON-CRICK A A 22 A N1 A 23 1_555 A U 45 A N3 U 46 1_555 hydrog WATSON-CRICK A A 22 A N6 A 23 1_555 A U 45 A O4 U 46 1_555 hydrog TYPE_28_PAIR A G 23 A N1 G 24 1_555 A U 44 A O2 U 45 1_555 hydrog TYPE_28_PAIR A G 23 A O6 G 24 1_555 A U 44 A N3 U 45 1_555 hydrog WATSON-CRICK A C 24 A N3 C 25 1_555 A G 43 A N1 G 44 1_555 hydrog WATSON-CRICK A C 24 A N4 C 25 1_555 A G 43 A O6 G 44 1_555 hydrog WATSON-CRICK A C 24 A O2 C 25 1_555 A G 43 A N2 G 44 1_555 hydrog WATSON-CRICK A C 25 A N3 C 26 1_555 A G 42 A N1 G 43 1_555 hydrog WATSON-CRICK A C 25 A N4 C 26 1_555 A G 42 A O6 G 43 1_555 hydrog WATSON-CRICK A C 25 A O2 C 26 1_555 A G 42 A N2 G 43 1_555 hydrog TYPE_28_PAIR A U 26 A N3 U 27 1_555 A G 41 A O6 G 42 1_555 hydrog TYPE_28_PAIR A U 26 A O2 U 27 1_555 A G 41 A N1 G 42 1_555 hydrog REVERSED HOOGSTEEN A A 29 A N6 A 30 1_555 A U 40 A O2 U 41 1_555 hydrog REVERSED HOOGSTEEN A A 29 A N7 A 30 1_555 A U 40 A N3 U 41 1_555 hydrog TYPE_10_PAIR A A 29 A N1 A 30 1_555 A G 41 A N2 G 42 1_555 hydrog TYPE_10_PAIR A A 29 A N6 A 30 1_555 A G 41 A N3 G 42 1_555 hydrog TYPE_2_PAIR A A 31 A N6 A 32 1_555 A A 37 A N7 A 38 1_555 hydrog TYPE_2_PAIR A A 31 A N7 A 32 1_555 A A 37 A N6 A 38 1_555 hydrog WATSON-CRICK A U 32 A N3 U 33 1_555 A A 64 A N1 A 65 1_555 hydrog WATSON-CRICK A U 32 A O4 U 33 1_555 A A 64 A N6 A 65 1_555 hydrog WATSON-CRICK A G 33 A N1 G 34 1_555 A C 67 A N3 C 68 1_555 hydrog WATSON-CRICK A G 33 A N2 G 34 1_555 A C 67 A O2 C 68 1_555 hydrog WATSON-CRICK A G 33 A O6 G 34 1_555 A C 67 A N4 C 68 1_555 hydrog WATSON-CRICK A G 34 A N1 G 35 1_555 A C 66 A N3 C 67 1_555 hydrog WATSON-CRICK A G 34 A N2 G 35 1_555 A C 66 A O2 C 67 1_555 hydrog WATSON-CRICK A G 34 A O6 G 35 1_555 A C 66 A N4 C 67 1_555 hydrog WATSON-CRICK A A 35 A N1 A 36 1_555 A U 63 A N3 U 64 1_555 hydrog WATSON-CRICK A A 35 A N6 A 36 1_555 A U 63 A O4 U 64 1_555 hydrog WATSON-CRICK A C 36 A N3 C 37 1_555 A G 62 A N1 G 63 1_555 hydrog WATSON-CRICK A C 36 A N4 C 37 1_555 A G 62 A O6 G 63 1_555 hydrog WATSON-CRICK A C 36 A O2 C 37 1_555 A G 62 A N2 G 63 1_555 hydrog WATSON-CRICK A A 37 A N1 A 38 1_555 A U 61 A N3 U 62 1_555 hydrog WATSON-CRICK A A 37 A N6 A 38 1_555 A U 61 A O4 U 62 1_555 hydrog WATSON-CRICK A C 38 A N3 C 39 1_555 A G 60 A N1 G 61 1_555 hydrog WATSON-CRICK A C 38 A N4 C 39 1_555 A G 60 A O6 G 61 1_555 hydrog WATSON-CRICK A C 38 A O2 C 39 1_555 A G 60 A N2 G 61 1_555 hydrog WATSON-CRICK A U 39 A N3 U 40 1_555 A A 59 A N1 A 60 1_555 hydrog WATSON-CRICK A U 39 A O4 U 40 1_555 A A 59 A N6 A 60 1_555 hydrog WATSON-CRICK B G 1 B N1 G 2 1_555 B C 76 B N3 C 77 1_555 hydrog WATSON-CRICK B G 1 B N2 G 2 1_555 B C 76 B O2 C 77 1_555 hydrog WATSON-CRICK B G 1 B O6 G 2 1_555 B C 76 B N4 C 77 1_555 hydrog WATSON-CRICK B A 2 B N1 A 3 1_555 B U 75 B N3 U 76 1_555 hydrog WATSON-CRICK B A 2 B N6 A 3 1_555 B U 75 B O4 U 76 1_555 hydrog U-C MISPAIR B U 3 B O4 U 4 1_555 B C 74 B N4 C 75 1_555 hydrog WATSON-CRICK B A 4 B N1 A 5 1_555 B U 73 B N3 U 74 1_555 hydrog WATSON-CRICK B A 4 B N6 A 5 1_555 B U 73 B O4 U 74 1_555 hydrog WATSON-CRICK B G 5 B N1 G 6 1_555 B C 72 B N3 C 73 1_555 hydrog WATSON-CRICK B G 5 B N2 G 6 1_555 B C 72 B O2 C 73 1_555 hydrog WATSON-CRICK B G 5 B O6 G 6 1_555 B C 72 B N4 C 73 1_555 hydrog WATSON-CRICK B G 6 B N1 G 7 1_555 B C 71 B N3 C 72 1_555 hydrog WATSON-CRICK B G 6 B N2 G 7 1_555 B C 71 B O2 C 72 1_555 hydrog WATSON-CRICK B G 6 B O6 G 7 1_555 B C 71 B N4 C 72 1_555 hydrog WATSON-CRICK B G 7 B N1 G 8 1_555 B C 70 B N3 C 71 1_555 hydrog WATSON-CRICK B G 7 B N2 G 8 1_555 B C 70 B O2 C 71 1_555 hydrog WATSON-CRICK B G 7 B O6 G 8 1_555 B C 70 B N4 C 71 1_555 hydrog TYPE_8_PAIR B A 8 B N1 A 9 1_555 B G 69 B N1 G 70 1_555 hydrog TYPE_8_PAIR B A 8 B N6 A 9 1_555 B G 69 B O6 G 70 1_555 hydrog G-C PAIR B G 9 B N2 G 10 1_555 B C 55 B O2 C 56 1_555 hydrog WATSON-CRICK B G 10 B N1 G 11 1_555 B C 54 B N3 C 55 1_555 hydrog WATSON-CRICK B G 10 B N2 G 11 1_555 B C 54 B O2 C 55 1_555 hydrog WATSON-CRICK B G 10 B O6 G 11 1_555 B C 54 B N4 C 55 1_555 hydrog WATSON-CRICK B C 11 B N3 C 12 1_555 B G 53 B N1 G 54 1_555 hydrog WATSON-CRICK B C 11 B N4 C 12 1_555 B G 53 B O6 G 54 1_555 hydrog WATSON-CRICK B C 11 B O2 C 12 1_555 B G 53 B N2 G 54 1_555 hydrog TYPE_11_PAIR B G 15 B N2 G 16 1_555 B A 52 B N7 A 53 1_555 hydrog TYPE_11_PAIR B G 15 B N3 G 16 1_555 B A 52 B N6 A 53 1_555 hydrog TYPE_11_PAIR B A 16 B N6 A 17 1_555 B G 51 B N3 G 52 1_555 hydrog TYPE_11_PAIR B A 16 B N7 A 17 1_555 B G 51 B N2 G 52 1_555 hydrog TYPE_11_PAIR B A 17 B N6 A 18 1_555 B G 50 B N3 G 51 1_555 hydrog TYPE_11_PAIR B A 17 B N7 A 18 1_555 B G 50 B N2 G 51 1_555 hydrog TYPE_28_PAIR B G 18 B N1 G 19 1_555 B U 49 B O2 U 50 1_555 hydrog TYPE_28_PAIR B G 18 B O6 G 19 1_555 B U 49 B N3 U 50 1_555 hydrog WATSON-CRICK B C 19 B N3 C 20 1_555 B G 48 B N1 G 49 1_555 hydrog WATSON-CRICK B C 19 B N4 C 20 1_555 B G 48 B O6 G 49 1_555 hydrog WATSON-CRICK B C 19 B O2 C 20 1_555 B G 48 B N2 G 49 1_555 hydrog WATSON-CRICK B A 20 B N1 A 21 1_555 B U 47 B N3 U 48 1_555 hydrog WATSON-CRICK B A 20 B N6 A 21 1_555 B U 47 B O4 U 48 1_555 hydrog WATSON-CRICK B U 21 B N3 U 22 1_555 B A 46 B N1 A 47 1_555 hydrog WATSON-CRICK B U 21 B O4 U 22 1_555 B A 46 B N6 A 47 1_555 hydrog WATSON-CRICK B A 22 B N1 A 23 1_555 B U 45 B N3 U 46 1_555 hydrog WATSON-CRICK B A 22 B N6 A 23 1_555 B U 45 B O4 U 46 1_555 hydrog TYPE_28_PAIR B G 23 B N1 G 24 1_555 B U 44 B O2 U 45 1_555 hydrog TYPE_28_PAIR B G 23 B O6 G 24 1_555 B U 44 B N3 U 45 1_555 hydrog WATSON-CRICK B C 24 B N3 C 25 1_555 B G 43 B N1 G 44 1_555 hydrog WATSON-CRICK B C 24 B N4 C 25 1_555 B G 43 B O6 G 44 1_555 hydrog WATSON-CRICK B C 24 B O2 C 25 1_555 B G 43 B N2 G 44 1_555 hydrog WATSON-CRICK B C 25 B N3 C 26 1_555 B G 42 B N1 G 43 1_555 hydrog WATSON-CRICK B C 25 B N4 C 26 1_555 B G 42 B O6 G 43 1_555 hydrog WATSON-CRICK B C 25 B O2 C 26 1_555 B G 42 B N2 G 43 1_555 hydrog TYPE_28_PAIR B U 26 B N3 U 27 1_555 B G 41 B O6 G 42 1_555 hydrog TYPE_28_PAIR B U 26 B O2 U 27 1_555 B G 41 B N1 G 42 1_555 hydrog REVERSED HOOGSTEEN B A 29 B N6 A 30 1_555 B U 40 B O2 U 41 1_555 hydrog REVERSED HOOGSTEEN B A 29 B N7 A 30 1_555 B U 40 B N3 U 41 1_555 hydrog TYPE_10_PAIR B A 29 B N1 A 30 1_555 B G 41 B N2 G 42 1_555 hydrog TYPE_10_PAIR B A 29 B N6 A 30 1_555 B G 41 B N3 G 42 1_555 hydrog WATSON-CRICK B U 32 B N3 U 33 1_555 B A 64 B N1 A 65 1_555 hydrog WATSON-CRICK B U 32 B O4 U 33 1_555 B A 64 B N6 A 65 1_555 hydrog WATSON-CRICK B G 33 B N1 G 34 1_555 B C 67 B N3 C 68 1_555 hydrog WATSON-CRICK B G 33 B N2 G 34 1_555 B C 67 B O2 C 68 1_555 hydrog WATSON-CRICK B G 33 B O6 G 34 1_555 B C 67 B N4 C 68 1_555 hydrog WATSON-CRICK B G 34 B N1 G 35 1_555 B C 66 B N3 C 67 1_555 hydrog WATSON-CRICK B G 34 B N2 G 35 1_555 B C 66 B O2 C 67 1_555 hydrog WATSON-CRICK B G 34 B O6 G 35 1_555 B C 66 B N4 C 67 1_555 hydrog WATSON-CRICK B A 35 B N1 A 36 1_555 B U 63 B N3 U 64 1_555 hydrog WATSON-CRICK B A 35 B N6 A 36 1_555 B U 63 B O4 U 64 1_555 hydrog WATSON-CRICK B C 36 B N3 C 37 1_555 B G 62 B N1 G 63 1_555 hydrog WATSON-CRICK B C 36 B N4 C 37 1_555 B G 62 B O6 G 63 1_555 hydrog WATSON-CRICK B C 36 B O2 C 37 1_555 B G 62 B N2 G 63 1_555 hydrog WATSON-CRICK B A 37 B N1 A 38 1_555 B U 61 B N3 U 62 1_555 hydrog WATSON-CRICK B A 37 B N6 A 38 1_555 B U 61 B O4 U 62 1_555 hydrog WATSON-CRICK B C 38 B N3 C 39 1_555 B G 60 B N1 G 61 1_555 hydrog WATSON-CRICK B C 38 B N4 C 39 1_555 B G 60 B O6 G 61 1_555 hydrog WATSON-CRICK B C 38 B O2 C 39 1_555 B G 60 B N2 G 61 1_555 hydrog WATSON-CRICK B U 39 B N3 U 40 1_555 B A 59 B N1 A 60 1_555 hydrog WATSON-CRICK B U 39 B O4 U 40 1_555 B A 59 B N6 A 60 1_555 hydrog A-U PAIR B A 56 B N6 A 57 1_555 B U 63 B O4 U 64 1_555 hydrog A-C MISPAIR B A 65 B N3 A 66 1_555 B C 67 B N4 C 68 1_555 RNA RNA, riboswitch, 2', 3'-cGAMP BA000004.3 GB 1 387923 47118318 AUAGGGAAGCAACGAAGCAUAGCCUUUAUAUGGACACUUGGGUUAUGUGGAGCUACUAGUGUAACCGGCCCUC 387923 387995 22MX 2 74 47118318 A 1 3 75 387923 387995 22MX 2 74 47118318 B 1 3 75 1 expression tag GTP 0 22MX A 47118318 GB 1 1 expression tag G 1 22MX A 47118318 GB 2 1 A engineered mutation G 9 22MX A 47118318 GB 387930 10 1 U engineered mutation C 55 22MX A 47118318 GB 387976 56 1 expression tag U 75 22MX A 47118318 GB 76 1 expression tag C 76 22MX A 47118318 GB 77 2 expression tag GTP 0 22MX B 47118318 GB 1 2 expression tag G 1 22MX B 47118318 GB 2 2 A engineered mutation G 9 22MX B 47118318 GB 387930 10 2 U engineered mutation C 55 22MX B 47118318 GB 387976 56 2 expression tag U 75 22MX B 47118318 GB 76 2 expression tag C 76 22MX B 47118318 GB 77 173 P 63