0.012832 0.000000 0.007444 0.000000 0.019621 0.000000 0.000000 0.000000 0.024225 0.00000 0.00000 0.00000 3.54356 2.42580 25.62398 1.50364 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.01032 2.96436 19.97189 1.75589 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 4.49882 3.47563 15.80542 1.70748 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 9.55732 6.39887 1.23737 29.19336 0.0 2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. 0000-0003-1567-1643 Ellis, P.K. 0000-0002-5264-1120 Schumacher, M.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 120.120 90.000 77.931 50.965 47.724 163954.495 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing To Be Published 0353 Structures reveal DnaA domain I dimer conserved across Actinomycetes: implications for replication initiation 0000-0003-1567-1643 0000-0002-5264-1120 10.2210/pdb10xh/pdb pdb_000010xh 100 1 N PIXEL 2025-06-19 RIGAKU HyPix-6000HE SINGLE WAVELENGTH M x-ray 1 1.54184 1.0 1.54184 SEALED TUBE RIGAKU PhotonJet-S 10100.588 Chromosomal replication initiator protein DnaA 2 man polymer 18.015 water 110 nat water no no GSHMSDDLLGPAGQATRIWSDTLRLLKQNPTLSPRDKSWLEGVVPEAVYGTTIVLCVSNMATQQALQNELNAPLLNALKI ISGNDMFPAFKIV GSHMSDDLLGPAGQATRIWSDTLRLLKQNPTLSPRDKSWLEGVVPEAVYGTTIVLCVSNMATQQALQNELNAPLLNALKI ISGNDMFPAFKIV A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 93 dnaA, GBA83_04370 1681 Bifidobacterium bifidum 562 Escherichia coli Biological sequence 1 2.03 39.38 VAPOR DIFFUSION, HANGING DROP 20% (v/v) 1,4-butanediol; 100 mM sodium acetate/acetic acid, pH 4.5 298 repository Initial release 1 0 2026-06-03 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R35GM130290 United States National Science Foundation (NSF, United States) DGE 2139754 Maria.schumacher@duke.edu 0000-0002-5264-1120 Maria Schumacher A principal investigator/group leader N RCSB Y RCSB 2026-02-11 REL REL HOH water N AlphaFold in silico model HOH 31 2 HOH HOH 101 A HOH 49 2 HOH HOH 102 A HOH 91 2 HOH HOH 103 A HOH 5 2 HOH HOH 104 A HOH 59 2 HOH HOH 105 A HOH 56 2 HOH HOH 106 A HOH 60 2 HOH HOH 107 A HOH 15 2 HOH HOH 108 A HOH 98 2 HOH HOH 109 A HOH 50 2 HOH HOH 110 A HOH 7 2 HOH HOH 111 A HOH 45 2 HOH HOH 112 A HOH 43 2 HOH HOH 113 A HOH 28 2 HOH HOH 114 A HOH 6 2 HOH HOH 115 A HOH 2 2 HOH HOH 116 A HOH 54 2 HOH HOH 117 A HOH 23 2 HOH HOH 118 A HOH 102 2 HOH HOH 119 A HOH 3 2 HOH HOH 120 A HOH 9 2 HOH HOH 121 A HOH 21 2 HOH HOH 122 A HOH 17 2 HOH HOH 123 A HOH 35 2 HOH HOH 124 A HOH 27 2 HOH HOH 125 A HOH 20 2 HOH HOH 126 A HOH 26 2 HOH HOH 127 A HOH 61 2 HOH HOH 128 A HOH 76 2 HOH HOH 129 A HOH 90 2 HOH HOH 130 A HOH 48 2 HOH HOH 131 A HOH 10 2 HOH HOH 132 A HOH 73 2 HOH HOH 133 A HOH 110 2 HOH HOH 134 A HOH 33 2 HOH HOH 135 A HOH 100 2 HOH HOH 136 A HOH 107 2 HOH HOH 137 A HOH 92 2 HOH HOH 138 A HOH 58 2 HOH HOH 139 A HOH 82 2 HOH HOH 140 A HOH 16 2 HOH HOH 141 A HOH 22 2 HOH HOH 142 A HOH 44 2 HOH HOH 143 A HOH 85 2 HOH HOH 144 A HOH 101 2 HOH HOH 145 A HOH 29 2 HOH HOH 146 A HOH 69 2 HOH HOH 147 A HOH 88 2 HOH HOH 148 A HOH 89 2 HOH HOH 149 A HOH 55 2 HOH HOH 150 A HOH 96 2 HOH HOH 151 A HOH 41 2 HOH HOH 152 A HOH 32 2 HOH HOH 153 A HOH 103 2 HOH HOH 154 A HOH 63 2 HOH HOH 155 A HOH 57 2 HOH HOH 156 A HOH 71 2 HOH HOH 157 A HOH 25 2 HOH HOH 101 B HOH 53 2 HOH HOH 102 B HOH 78 2 HOH HOH 103 B HOH 40 2 HOH HOH 104 B HOH 24 2 HOH HOH 105 B HOH 95 2 HOH HOH 106 B HOH 19 2 HOH HOH 107 B HOH 11 2 HOH HOH 108 B HOH 13 2 HOH HOH 109 B HOH 12 2 HOH HOH 110 B HOH 46 2 HOH HOH 111 B HOH 67 2 HOH HOH 112 B HOH 8 2 HOH HOH 113 B HOH 4 2 HOH HOH 114 B HOH 1 2 HOH HOH 115 B HOH 18 2 HOH HOH 116 B HOH 37 2 HOH HOH 117 B HOH 94 2 HOH HOH 118 B HOH 30 2 HOH HOH 119 B HOH 52 2 HOH HOH 120 B HOH 80 2 HOH HOH 121 B HOH 106 2 HOH HOH 122 B HOH 99 2 HOH HOH 123 B HOH 47 2 HOH HOH 124 B HOH 65 2 HOH HOH 125 B HOH 86 2 HOH HOH 126 B HOH 75 2 HOH HOH 127 B HOH 81 2 HOH HOH 128 B HOH 62 2 HOH HOH 129 B HOH 105 2 HOH HOH 130 B HOH 34 2 HOH HOH 131 B HOH 70 2 HOH HOH 132 B HOH 39 2 HOH HOH 133 B HOH 108 2 HOH HOH 134 B HOH 87 2 HOH HOH 135 B HOH 93 2 HOH HOH 136 B HOH 68 2 HOH HOH 137 B HOH 66 2 HOH HOH 138 B HOH 109 2 HOH HOH 139 B HOH 36 2 HOH HOH 140 B HOH 38 2 HOH HOH 141 B HOH 84 2 HOH HOH 142 B HOH 77 2 HOH HOH 143 B HOH 64 2 HOH HOH 144 B HOH 74 2 HOH HOH 145 B HOH 104 2 HOH HOH 146 B HOH 42 2 HOH HOH 147 B HOH 51 2 HOH HOH 148 B HOH 14 2 HOH HOH 149 B HOH 79 2 HOH HOH 150 B HOH 83 2 HOH HOH 151 B HOH 72 2 HOH HOH 152 B HOH 97 2 HOH HOH 153 B n 1 -2 A n 2 -1 A n 3 0 A MET 1 n 4 MET 1 A SER 2 n 5 SER 2 A ASP 3 n 6 ASP 3 A ASP 4 n 7 ASP 4 A LEU 5 n 8 LEU 5 A LEU 6 n 9 LEU 6 A GLY 7 n 10 GLY 7 A PRO 8 n 11 PRO 8 A ALA 9 n 12 ALA 9 A GLY 10 n 13 GLY 10 A GLN 11 n 14 GLN 11 A ALA 12 n 15 ALA 12 A THR 13 n 16 THR 13 A ARG 14 n 17 ARG 14 A ILE 15 n 18 ILE 15 A TRP 16 n 19 TRP 16 A SER 17 n 20 SER 17 A ASP 18 n 21 ASP 18 A THR 19 n 22 THR 19 A LEU 20 n 23 LEU 20 A ARG 21 n 24 ARG 21 A LEU 22 n 25 LEU 22 A LEU 23 n 26 LEU 23 A LYS 24 n 27 LYS 24 A GLN 25 n 28 GLN 25 A ASN 26 n 29 ASN 26 A PRO 27 n 30 PRO 27 A THR 28 n 31 THR 28 A LEU 29 n 32 LEU 29 A SER 30 n 33 SER 30 A PRO 31 n 34 PRO 31 A ARG 32 n 35 ARG 32 A ASP 33 n 36 ASP 33 A LYS 34 n 37 LYS 34 A SER 35 n 38 SER 35 A TRP 36 n 39 TRP 36 A LEU 37 n 40 LEU 37 A GLU 38 n 41 GLU 38 A GLY 39 n 42 GLY 39 A VAL 40 n 43 VAL 40 A VAL 41 n 44 VAL 41 A PRO 42 n 45 PRO 42 A GLU 43 n 46 GLU 43 A ALA 44 n 47 ALA 44 A VAL 45 n 48 VAL 45 A TYR 46 n 49 TYR 46 A GLY 47 n 50 GLY 47 A THR 48 n 51 THR 48 A THR 49 n 52 THR 49 A ILE 50 n 53 ILE 50 A VAL 51 n 54 VAL 51 A LEU 52 n 55 LEU 52 A CYS 53 n 56 CYS 53 A VAL 54 n 57 VAL 54 A SER 55 n 58 SER 55 A ASN 56 n 59 ASN 56 A MET 57 n 60 MET 57 A ALA 58 n 61 ALA 58 A THR 59 n 62 THR 59 A GLN 60 n 63 GLN 60 A GLN 61 n 64 GLN 61 A ALA 62 n 65 ALA 62 A LEU 63 n 66 LEU 63 A GLN 64 n 67 GLN 64 A ASN 65 n 68 ASN 65 A GLU 66 n 69 GLU 66 A LEU 67 n 70 LEU 67 A ASN 68 n 71 ASN 68 A ALA 69 n 72 ALA 69 A PRO 70 n 73 PRO 70 A LEU 71 n 74 LEU 71 A LEU 72 n 75 LEU 72 A ASN 73 n 76 ASN 73 A ALA 74 n 77 ALA 74 A LEU 75 n 78 LEU 75 A LYS 76 n 79 LYS 76 A ILE 77 n 80 ILE 77 A ILE 78 n 81 ILE 78 A SER 79 n 82 SER 79 A GLY 80 n 83 GLY 80 A ASN 81 n 84 ASN 81 A ASP 82 n 85 ASP 82 A MET 83 n 86 MET 83 A PHE 84 n 87 PHE 84 A PRO 85 n 88 PRO 85 A ALA 86 n 89 ALA 86 A PHE 87 n 90 PHE 87 A LYS 88 n 91 LYS 88 A ILE 89 n 92 ILE 89 A VAL 90 n 93 VAL 90 A n 1 -2 B n 2 -1 B n 3 0 B n 4 1 B n 5 2 B n 6 3 B n 7 4 B n 8 5 B LEU 6 n 9 LEU 6 B GLY 7 n 10 GLY 7 B PRO 8 n 11 PRO 8 B ALA 9 n 12 ALA 9 B GLY 10 n 13 GLY 10 B GLN 11 n 14 GLN 11 B ALA 12 n 15 ALA 12 B THR 13 n 16 THR 13 B ARG 14 n 17 ARG 14 B ILE 15 n 18 ILE 15 B TRP 16 n 19 TRP 16 B SER 17 n 20 SER 17 B ASP 18 n 21 ASP 18 B THR 19 n 22 THR 19 B LEU 20 n 23 LEU 20 B ARG 21 n 24 ARG 21 B LEU 22 n 25 LEU 22 B LEU 23 n 26 LEU 23 B LYS 24 n 27 LYS 24 B GLN 25 n 28 GLN 25 B ASN 26 n 29 ASN 26 B PRO 27 n 30 PRO 27 B THR 28 n 31 THR 28 B LEU 29 n 32 LEU 29 B SER 30 n 33 SER 30 B PRO 31 n 34 PRO 31 B ARG 32 n 35 ARG 32 B ASP 33 n 36 ASP 33 B LYS 34 n 37 LYS 34 B SER 35 n 38 SER 35 B TRP 36 n 39 TRP 36 B LEU 37 n 40 LEU 37 B GLU 38 n 41 GLU 38 B GLY 39 n 42 GLY 39 B VAL 40 n 43 VAL 40 B VAL 41 n 44 VAL 41 B PRO 42 n 45 PRO 42 B GLU 43 n 46 GLU 43 B ALA 44 n 47 ALA 44 B VAL 45 n 48 VAL 45 B TYR 46 n 49 TYR 46 B GLY 47 n 50 GLY 47 B THR 48 n 51 THR 48 B THR 49 n 52 THR 49 B ILE 50 n 53 ILE 50 B VAL 51 n 54 VAL 51 B LEU 52 n 55 LEU 52 B CYS 53 n 56 CYS 53 B VAL 54 n 57 VAL 54 B SER 55 n 58 SER 55 B ASN 56 n 59 ASN 56 B MET 57 n 60 MET 57 B ALA 58 n 61 ALA 58 B THR 59 n 62 THR 59 B GLN 60 n 63 GLN 60 B GLN 61 n 64 GLN 61 B ALA 62 n 65 ALA 62 B LEU 63 n 66 LEU 63 B GLN 64 n 67 GLN 64 B ASN 65 n 68 ASN 65 B GLU 66 n 69 GLU 66 B LEU 67 n 70 LEU 67 B ASN 68 n 71 ASN 68 B ALA 69 n 72 ALA 69 B PRO 70 n 73 PRO 70 B LEU 71 n 74 LEU 71 B LEU 72 n 75 LEU 72 B ASN 73 n 76 ASN 73 B ALA 74 n 77 ALA 74 B LEU 75 n 78 LEU 75 B LYS 76 n 79 LYS 76 B ILE 77 n 80 ILE 77 B ILE 78 n 81 ILE 78 B SER 79 n 82 SER 79 B GLY 80 n 83 GLY 80 B ASN 81 n 84 ASN 81 B ASP 82 n 85 ASP 82 B MET 83 n 86 MET 83 B PHE 84 n 87 PHE 84 B PRO 85 n 88 PRO 85 B ALA 86 n 89 ALA 86 B PHE 87 n 90 PHE 87 B LYS 88 n 91 LYS 88 B ILE 89 n 92 ILE 89 B VAL 90 n 93 VAL 90 B 7.16033587176 7.32276008019 -0.774974369631 8.7974850526 -0.231150940321 5.71428079 -0.158676834592 -1.97313600437 1.58192870433 0.745374819144 0.726454666839 1.54539284752 0.159159564434 -1.3186016318 -0.140977349866 0.244504676468 0.111189326413 -0.0205026666531 0.910688252804 -0.0627979249502 0.481446323693 refined -3.22077046196 11.8406704363 3.51792209413 X-RAY DIFFRACTION 6.09035294753 1.53870021048 1.97600691161 8.40258302768 3.57479954538 4.93429515993 0.155308339424 0.272654093951 0.225165265909 0.185326391934 0.139080877371 0.0079665260655 -0.281601552128 0.0568229103062 -0.156093028567 0.1228229455 0.0241856550397 0.03270021079 0.205671364831 0.00151233533256 0.198865701453 refined 9.0828397859 15.4445226228 15.1460862446 X-RAY DIFFRACTION 1.50759606335 -0.471859204526 -0.509479989493 6.20590105925 1.38368211317 4.62149620687 0.0376162877804 -0.49775679765 0.585125149863 -0.16803816533 -0.336593718347 -0.298693198386 -0.423054701887 0.191857953312 0.36675749496 0.132475391232 -0.0194146810179 0.00350343649193 0.333859720562 -0.0918839698672 0.313288229343 refined 16.615257341 11.2341162918 13.844467127 X-RAY DIFFRACTION 8.50541629094 -0.569578958657 -1.27619308714 5.5066035319 0.892327265104 6.66631481497 -0.268376931174 -0.619471116779 -0.173258243093 0.46649927976 0.0515371015341 -0.478424159667 0.208231400975 0.699404921502 0.244514490045 0.160698846652 0.0369457907029 -0.0294055610178 0.23182975303 -0.0197979278947 0.242628857276 refined 17.0707670535 4.76209179605 15.9121096409 X-RAY DIFFRACTION 2.17557105981 -3.4203587218 -2.03071335356 7.00985662566 0.623085275073 8.51076278724 -0.234822832608 -0.402002985613 -0.351078477785 0.967581289502 0.273313925351 0.641976886362 0.0313755747879 -0.196379788509 -0.0480482698946 0.244212304217 0.015409284598 0.103216898864 0.210859549441 -0.0362164416915 0.234973459578 refined 6.13952507191 9.45787427246 20.6005013054 X-RAY DIFFRACTION 7.03086674101 -4.28797318091 -1.23893090955 5.94649531271 2.35123076755 7.45301190609 0.183360428856 0.162204634958 0.493680588315 0.125816079977 0.0542463373106 0.222200042917 0.160199669409 -0.131543213325 -0.298812180764 0.142411764546 -0.0415134072564 0.0321191964052 0.114287360771 0.0100125873471 0.198963959873 refined 10.4066271245 2.83593444227 13.9260041548 X-RAY DIFFRACTION 4.49113067394 -5.90303796477 -3.09106725714 8.48013320614 3.80455504369 4.29756340294 -0.312754173088 0.353120956634 -1.03655668028 -0.00104028688779 -0.0384337935175 0.456228120935 0.881472568395 -0.016194142486 0.42872566437 0.705231206798 -0.0966770065807 0.127122154871 0.283746768994 -0.06506732337 0.416201171877 refined 15.0073850848 -18.2693620967 4.46208926445 X-RAY DIFFRACTION 7.96206035921 -7.39540404608 -5.01901057644 8.76938465171 5.63738060185 8.12265761226 -1.12104935177 -1.02203475104 -0.655284384573 0.985125426354 0.41947557141 0.95401869631 0.558713274614 0.418965542091 0.320817699724 0.739055297891 0.25310301845 0.136410967092 0.54004397226 -0.0431817080556 0.532683594091 refined 25.0008612168 -17.8610138225 12.9291814607 X-RAY DIFFRACTION 2.6961840979 -0.509701540256 -0.745839575969 9.49251825386 -5.31414511974 6.811688457 -0.333125191023 0.265636401279 -0.415438421238 -0.217272055865 0.00213356340508 0.103457802133 0.771691348255 -0.184195406658 0.376348349619 0.36822950281 -0.0981215973321 0.158990227098 0.210910697755 -0.0429515172062 0.248606217687 refined 9.5349442345 -9.484911126 10.564077309 X-RAY DIFFRACTION 9.06873174988 -1.17614129117 1.05664762503 5.01705474934 0.418517938481 2.75445586815 -0.661731146546 -0.0979473185379 -0.525718856273 0.147104534725 0.4011629073 -0.461590414181 0.411527719075 0.416703071753 0.272250062138 0.334587399319 0.0403460160716 0.127180814586 0.248928957069 -0.00897352545905 0.23489737943 refined 19.8480632965 -7.33628655666 11.3648885351 X-RAY DIFFRACTION 7.71805277356 -3.51103010101 1.88729952002 2.13303012559 -2.02319977032 4.31833212371 0.296364872522 1.12704800192 -0.663521085319 -0.810414401365 -0.214882611024 -0.253385631829 0.885484684341 0.353199363983 -0.0435096706339 0.601536913763 -0.0790098735057 0.158888257282 0.371914064776 -0.104300424991 0.326392637168 refined 18.4241333665 -11.767563581 -1.27819543084 X-RAY DIFFRACTION 7.59217455197 -0.548401517081 -2.44251572633 5.91305887346 2.19331237556 1.47772417073 -0.467497101722 0.310273620435 -0.283502050281 -0.556860909173 0.413494494782 -0.0435394697859 0.319029195737 0.0391025014193 -0.0593878282303 0.327422966698 -0.0651130884978 0.129422653074 0.17683808397 -0.0137202879232 0.24936772857 refined 14.8462579932 -5.65212164311 6.45929046642 X-RAY DIFFRACTION A 1 A 1 A 7 A 7 X-RAY DIFFRACTION 1 chain 'A' and (resid 1 through 7 ) A 8 A 8 A 30 A 30 X-RAY DIFFRACTION 2 chain 'A' and (resid 8 through 30 ) A 31 A 31 A 46 A 46 X-RAY DIFFRACTION 3 chain 'A' and (resid 31 through 46 ) A 47 A 47 A 67 A 67 X-RAY DIFFRACTION 4 chain 'A' and (resid 47 through 67 ) A 68 A 68 A 79 A 79 X-RAY DIFFRACTION 5 chain 'A' and (resid 68 through 79 ) A 80 A 80 A 90 A 90 X-RAY DIFFRACTION 6 chain 'A' and (resid 80 through 90 ) B 7 B 2 B 30 B 25 X-RAY DIFFRACTION 7 chain 'B' and (resid 7 through 30 ) B 31 B 26 B 38 B 33 X-RAY DIFFRACTION 8 chain 'B' and (resid 31 through 38 ) B 39 B 34 B 46 B 41 X-RAY DIFFRACTION 9 chain 'B' and (resid 39 through 46 ) B 47 B 42 B 67 B 62 X-RAY DIFFRACTION 10 chain 'B' and (resid 47 through 67 ) B 68 B 63 B 79 B 74 X-RAY DIFFRACTION 11 chain 'B' and (resid 68 through 79 ) B 80 B 75 B 90 B 85 X-RAY DIFFRACTION 12 chain 'B' and (resid 80 through 90 ) author_defined_assembly 2 dimeric homology 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 44 A N ALA 47 A O VAL 51 A O VAL 54 A N LEU 52 A N LEU 55 A O ALA 86 A O ALA 89 B N ALA 44 B N ALA 47 B O VAL 51 B O VAL 54 B N VAL 54 B N VAL 57 B O LYS 88 B O LYS 91 1 A HOH 124 C HOH 1 A N MET 1 A N MET 4 1 Y 1 A CG MET 57 A CG MET 60 1 Y 1 A SD MET 57 A SD MET 60 1 Y 1 A CE MET 57 A CE MET 60 1 Y 1 A GLY -2 A GLY 1 1 Y 1 A SER -1 A SER 2 1 Y 1 A HIS 0 A HIS 3 1 Y 1 B GLY -2 B GLY 1 1 Y 1 B SER -1 B SER 2 1 Y 1 B HIS 0 B HIS 3 1 Y 1 B MET 1 B MET 4 1 Y 1 B SER 2 B SER 5 1 Y 1 B ASP 3 B ASP 6 1 Y 1 B ASP 4 B ASP 7 1 Y 1 B LEU 5 B LEU 8 1 Y 1 A ASN 65 -122.50 -96.44 1 B ASN 65 -122.93 -98.45 37.84 0.2213 0.1822 0.1862 1.90 23.67 1282 11555 12837 9.99 99.74 0.2139 1 FREE R-VALUE 1.34 MOLECULAR REPLACEMENT 25.0868 0.9000 1.1000 GeoStd + Monomer Library + CDL v1.2 FLAT BULK SOLVENT MODEL 1.90 23.67 110 1444 0 0 1334 0.0072 1401 0.8794 1920 0.0548 231 0.0059 248 12.3937 527 d_2 A A ens_1 X-RAY DIFFRACTION Torsion NCS 0.72586096475 0.3130 0.2669 1.98 139 1283 99.72 0.3302 0.2113 2.07 137 1261 100.00 0.2619 0.2039 2.17 140 1293 100.00 0.2507 0.2014 2.31 146 1291 99.86 0.2336 0.1984 2.49 139 1265 99.86 0.2680 0.2088 2.74 147 1273 99.37 0.2240 0.2039 3.13 145 1281 99.37 0.2133 0.1609 3.95 141 1293 99.86 0.1709 0.1518 23.67 148 1315 99.66 26.52 1.90 23.67 10XH 12871 1.000 0.011 0.043 1 40.7 15.2 100.0 1.9 1.94 6.0 895 0.976 0.122 0.482 1 15.3 100.0 refinement PHENIX 1.20.1_4487 data reduction CrysalisPro data scaling Aimless phasing PHASER 5 monoclinic C 1 2 1 C 2y x,y,z -x,y,-z x+1/2,y+1/2,z -x+1/2,y+1/2,-z N Bifidobacterium bifidum DnaA DI 1 N N 1 N N 2 N N 2 N N A GLY 7 A GLY 10 HELX_P A GLN 25 A GLN 28 1 AA1 19 A SER 30 A SER 33 HELX_P A GLU 38 A GLU 41 1 AA2 9 A ASN 56 A ASN 59 HELX_P A ASN 65 A ASN 68 1 AA3 10 A LEU 67 A LEU 70 HELX_P A GLY 80 A GLY 83 1 AA4 14 B GLY 7 B GLY 10 HELX_P B GLN 25 B GLN 28 1 AA5 19 B SER 30 B SER 33 HELX_P B LEU 37 B LEU 40 1 AA6 8 B ASN 56 B ASN 59 HELX_P B ASN 65 B ASN 68 1 AA7 10 B LEU 67 B LEU 70 HELX_P B GLY 80 B GLY 83 1 AA8 14 DNA BINDING PROTEIN Initiator, DNA BINDING PROTEIN (chain "A" and (resid 7 through 16 or resid 18 through 19 or resid 21 through 23 or resid 25 through 31 or resid 33 through 52 or resid 54 through 75 or resid 77 or resid 79 through 90)) (chain "B" and (resid 7 through 16 or resid 18 through 19 or resid 21 through 23 or resid 25 through 31 or resid 33 through 52 or resid 54 through 56 or (resid 57 through 58 and (name N or name CA or name C or name O or name CB )) or resid 59 through 75 or resid 77 or resid 79 through 90)) A GLY 7 A GLY 10 A TRP 16 A TRP 19 A ASP 18 A ASP 21 A THR 19 A THR 22 A ARG 21 A ARG 24 A LEU 23 A LEU 26 A GLN 25 A GLN 28 A PRO 31 A PRO 34 A ASP 33 A ASP 36 A LEU 52 A LEU 55 A VAL 54 A VAL 57 A LEU 75 A LEU 78 A ILE 77 A ILE 80 A ILE 77 A ILE 80 A SER 79 A SER 82 A VAL 90 A VAL 93 B GLY 7 B GLY 10 B TRP 16 B TRP 19 B ASP 18 B ASP 21 B THR 19 B THR 22 B ARG 21 B ARG 24 B LEU 23 B LEU 26 B GLN 25 B GLN 28 B PRO 31 B PRO 34 B ASP 33 B ASP 36 B LEU 52 B LEU 55 B VAL 54 B VAL 57 B LEU 75 B LEU 78 B ILE 77 B ILE 80 B ILE 77 B ILE 80 B SER 79 B SER 82 B VAL 90 B VAL 93 given 0.542487517227 0.0421830569703 0.83900410211 0.0324214425571 -0.999045710545 0.02926633396 0.839437992776 0.0113251024535 -0.543337462669 -2.83598820566 -3.73720008158 5.19961061957 A0A0M5KVR3_BIFBI UNP 1 1 A0A0M5KVR3 MSDDLLGPAGQATRIWSDTLRLLKQNPTLSPRDKSWLEGVVPEAVYGTTIVLCVSNMATQQALQNELNAPLLNALKIISG NDMFPAFKIV 1 90 10XH 1 90 A0A0M5KVR3 A 1 4 93 1 90 10XH 1 90 A0A0M5KVR3 B 1 4 93 1 expression tag GLY -2 10XH A A0A0M5KVR3 UNP 1 1 expression tag SER -1 10XH A A0A0M5KVR3 UNP 2 1 expression tag HIS 0 10XH A A0A0M5KVR3 UNP 3 2 expression tag GLY -2 10XH B A0A0M5KVR3 UNP 1 2 expression tag SER -1 10XH B A0A0M5KVR3 UNP 2 2 expression tag HIS 0 10XH B A0A0M5KVR3 UNP 3 3 3 anti-parallel parallel anti-parallel parallel A VAL 40 A VAL 43 A TYR 46 A TYR 49 A THR 49 A THR 52 A VAL 54 A VAL 57 A PHE 84 A PHE 87 A ILE 89 A ILE 92 B VAL 40 B VAL 43 B TYR 46 B TYR 49 B THR 49 B THR 52 B VAL 54 B VAL 57 B PHE 84 B PHE 87 B ILE 89 B ILE 92 5 C 1 2 1 C 2y