2024-03-27 REL PDBj PDBj PDBj 2019-07-19 2020-03-04 2020-03-04 2024-03-27 Japan Science and Technology JPMJCR14M1 Japan Japan Agency for Medical Research and Development (AMED) JP19am0101115j003 Japan Complex of yeast cytoplasmic dynein MTBD-High and MT with DTT Komori Y Nishida N Dynein, Microtubule, MOTOR PROTEIN-STRUCTURAL PROTEIN complex Nishida N Komori Y Takarada O Watanabe A Tamura S Kubo S Shimada I Kikkawa M Structural basis for two-way communication between dynein and microtubules. Nat Commun UK 11 1038 1038 2020 32098965 doi:10.1038/s41467-020-14842-8 2041-1723 EMD-9996 other EM volume 6kiq FULLOVERLAP MTBD-High/MT complex with DTT MTBD-High/MT complex with DTT 0 1 2 3
DTT was added to cleave the disulfide bond between CC1 and CC2 of MTBD-High
Sus scrofa Alpha tubulin Sus scrofa 0.045959980000000004 1 LEVO RECISIHVGQAGVQIGNACWELYCLEHGIQPDGHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGH YTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNS ILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHF PLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWC PTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAA LEKDYEEVGVDS Tubulin beta chain Sus scrofa 0.047809746 1 LEVO REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPF GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD RIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRM SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE GMDEMEFTEAESNMNDLVSEYQQYQD P02554 Dynein heavy chain, cytoplasmic Saccharomyces cerevisiae S288c S288c 0.015264564 1 Escherichia coli LEVO MKSIQDCEPTILEAQRGVKNIKKQQLTEIRSMVNPPSGVKIVMEAVCAILGYQFSNWRDIQQFIRKDDFIHNIVHYDTTL HMKPQIRKYMEEEFLSDPNFTYETINRASKACGPLYQWVNAQINFSKCLE P36022 helical filament 6.8 80.0 C8H18N2O6S2 PIPES pH 6.8 1.0 C14H24N2O10 EGTA 1.0 MgCl2 magnesium chloride 0.01 C14H22O(C2H4O)n NP40
DTT was added to the final concentration of 1 mM.
 Quantifoil R1.2/1.3 COPPER/RHODIUM ETHANE 100 279.0 FEI VITROBOT MARK IV FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 2.7 1.0 2.5 OTHER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 1-40 1 621 10.0 54.0 1 9.2219 -25.7519 C1 3.62 FSC 0.143 CUT-OFF
FSCtrue was calculated to validate the resolution.
32666 35636
particles were collected using PyFilamentPicker
Cryo-EM map of microtubule filtered to 8 Angstroms
 NOT APPLICABLE FREALIGN 9.11
FREALIGN v9.11 and "super-particle" based approach were used to refine the angular assignment
 emd_9997.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 180 180 180 0 0 0 180 180 180 237.6 237.6 237.6 90.0 90.0 90.0 X Y Z -0.36650035 0.8984432 0.0096481275 0.054478526 1.32 1.32 1.32 0.125 AUTHOR Cryo-EM map of MTBD-High/MT complex, filtered to the local resolution. FLEXIBLE FIT Correlation coefficient REAL