<emd emdb_id="EMD-9638" version="3.0.0.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_1/emdb.xsd">
    <admin>
        <current_status>
            <date>2018-12-26</date>
            <code>REL</code>
            <processing_site>PDBj</processing_site>
        </current_status>
        <sites>
            <deposition>PDBj</deposition>
            <last_processing>PDBj</last_processing>
        </sites>
        <key_dates>
            <deposition>2018-08-28</deposition>
            <header_release>2018-10-10</header_release>
            <map_release>2018-10-10</map_release>
            <update>2018-12-26</update>
        </key_dates>
        <title>4R-MAP4, kinesin-1, and microtubule complex</title>
        <authors_list>
            <author>Shigematsu H</author>
            <author>Imasaki T</author>
            <author>Doki C</author>
            <author>Sumi T</author>
            <author>Aoki M</author>
            <author>Uchikubo-Kamo T</author>
            <author>Sakamoto A</author>
            <author>Tokuraku K</author>
            <author>Shirouzu M</author>
            <author>Nitta R</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Shigematsu H</author>
                    <author order="2">Imasaki T</author>
                    <author order="3">Doki C</author>
                    <author order="4">Sumi T</author>
                    <author order="5">Aoki M</author>
                    <author order="6">Uchikubo-Kamo T</author>
                    <author order="7">Sakamoto A</author>
                    <author order="8">Tokuraku K</author>
                    <author order="9">Shirouzu M</author>
                    <author order="10">Nitta R</author>
                    <title>Structural insight into microtubule stabilization and kinesin inhibition by Tau family MAPs.</title>
                    <journal_abbreviation>J. Cell Biol.</journal_abbreviation>
                    <country>US</country>
                    <volume>217</volume>
                    <first_page>4155</first_page>
                    <last_page>4163</last_page>
                    <year>2018</year>
                    <external_references type="PUBMED">30275105</external_references>
                    <external_references type="DOI">doi:10.1083/jcb.201711182</external_references>
                    <external_references type="ISSN">1540-8140</external_references>
                    <external_references type="CSD">2019</external_references>
                    <external_references type="ASTM">JCLBA3</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-9638</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-9637</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Microtubule-Kinesin1-4R-MAP4 complex</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Microtubule-Kinesin1-4R-MAP4 complex</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                    <recombinant_strain>BL-21(DE3)pLysS</recombinant_strain>
                    <recombinant_plasmid>pET21d</recombinant_plasmid>
                </recombinant_expression>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                        <details>100mM PIPES-KOH at pH 6.8, 1mM MgCl2, 1mM EGTA</details>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/2</model>
                        <material>COPPER</material>
                        <mesh>300</mesh>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">300</chamber_temperature>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                        <details>Blot time 5sec, Blot Force 20. </details>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI ARCTICA</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <c2_aperture_diameter units="&#181;m">30.0</c2_aperture_diameter>
                    <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">2.5</nominal_defocus_max>
                    <nominal_magnification>78000.</nominal_magnification>
                    <specimen_holder_model>OTHER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <alignment_procedure>
                        <coma_free />
                    </alignment_procedure>
                    <details>Alignment procedure by FEI User Interface Software. Not determined the residual tilt value.</details>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON II (4k x 4k)</film_or_detector_model>
                            <detector_mode>INTEGRATING</detector_mode>
                            <digitization_details>
                                <frames_per_image>1-34</frames_per_image>
                            </digitization_details>
                            <number_grids_imaged>1</number_grids_imaged>
                            <average_exposure_time units="s">2.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/&#8491;^2">55.0</average_electron_dose_per_image>
                            <details>Images were collected in movie-mode at 17 frames per second by using Falcon Hack developed by Greg McMullan</details>
                        </image_recording>
                    </image_recording_list>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="&#8491;">8.7</delta_z>
                            <delta_phi units="deg">-25.76</delta_phi>
                            <axial_symmetry>C1</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="&#8491;">7.35</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>77616</number_images_used>
                </final_reconstruction>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>CTFFIND</name>
                            <version>3</version>
                        </software>
                    </software_list>
                </ctf_correction>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </final_angle_assignment>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="15437">
        <file>emd_9638.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>129</col>
            <row>155</row>
            <sec>193</sec>
        </dimensions>
        <origin>
            <col>-100</col>
            <row>-120</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>129</x>
            <y>155</y>
            <z>193</z>
        </spacing>
        <cell>
            <a units="&#8491;">165.636</a>
            <b units="&#8491;">199.02</b>
            <c units="&#8491;">247.81201</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-7.562476</minimum>
            <maximum>19.190951999999999</maximum>
            <average>1.2781348</average>
            <std>3.3270278</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">1.284</x>
            <y units="&#8491;">1.284</y>
            <z units="&#8491;">1.284</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>3.</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-9638::::</label>
        <annotation_details>4R-MAP4%u2013kinesin-1%u2013microtubule complex</annotation_details>
    </map>
</emd>