2019-09-04 REL PDBj PDBj PDBj 2018-08-03 2019-09-04 2019-09-04 2019-09-04 Other government BT/HRD/35/02/19/2009 India Negative stain EM reconstruction of Mycobacterium Mfd Oligomer (Dodecamer) Vinayak B Putta S Rao DN Nagaraja V Natesh R Putta S Prabha S Bhat V Fox GC Walsh MA Rao DN Nagaraja V Natesh R Structural basis for nucleotide-mediated remodelling mechanism of Mycobacterium Mfd To Be Published 0353 EMD-9614 associated EM volume Mycobacterium tuberculosis Mfd Oligomer (Dodecamer) Mycobacterium tuberculosis Mfd Oligomer (Dodecamer) 0 1
Oligomeric MtbMfd fraction from Size Exclusion Chromatography.
Mycobacterium tuberculosis H37Rv H37Rv Escherichia coli Rosetta (DE3) pETMtbMfd 1.596 Mycobactetrium tuberculosis Mfd Oligomer (Dodecamer) Mycobacterium tuberculosis H37Rv
MtbMfd oligomer peak from SEC
Escherichia coli LEVO MGSSHHHHHHSSGLVPRGSH MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGR EADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSL LQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEF WGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKL AEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAE NQAPVDVEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITET DLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRG GGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHA FSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQV AVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKD LGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREH DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLAT IAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTA EEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARL RLLCRGSGITDVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVE LVQMVADLITALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 3.4.6.- singleParticle particle 2 8.0
20mM Tris pH8.0, 500mM NaCl, 10mM beta mercaptoethanol
 NEGATIVE Uranyl Acetate
Negatively stained EM specimen were prepared by stained with 2% uranyl acetate for one minute and air dried.
 Homemade COPPER 400 CARBON CONTINUOUS
negative stain specimen was prepared by fishing method without Glow Discharge
This sample was monodisperse
 JEOL 1200EXII OTHER BRIGHT FIELD TUNGSTEN HAIRPIN 100 3.5 40000. 52974. GATAN ORIUS SC600 (2.7k x 2.7k) 1 100 1.0 10.0
Images were collected on CCD.
 1 2478 CTFFIND
60 A Low Pass filed MtdMfd 43 symmetry generated from PDB6ACA crystal structure
 C1 30.77 FSC 0.143 CUT-OFF RELION 1.4 958 OTHER
RELION 1.4
 OTHER
RELION 1.4
 4 RELION 1.4 emd_9614.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 190 190 190 0 0 0 190 190 190 323.0 323.0 323.0 90.0 90.0 90.0 X Y Z -0.12277557 0.36352995 0.0208122 0.06767219 1.7 1.7 1.7 0.136 AUTHOR 1.5 sigma 6ACA A RIGID BODY FIT
Initial manually moved into the EM map and then Rigid body fitted using 43 symmetry 12 mer as single rigid body into the EM map using Chimera.
Correlation coefficient REAL