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            <date>2025-06-18</date>
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        <sites>
            <deposition>PDBj</deposition>
            <last_processing>PDBj</last_processing>
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        <key_dates>
            <deposition>2018-08-02</deposition>
            <header_release>2019-02-06</header_release>
            <map_release>2019-02-06</map_release>
            <update>2025-06-18</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Basic Research Program of China (973 Program)</funding_body>
                <country>China</country>
            </grant_reference>
        </grant_support>
        <title>Structure of Seneca Valley Virus in neutral condition</title>
        <authors_list>
            <author>Lou ZY</author>
            <author>Cao L</author>
        </authors_list>
        <keywords>VIRUS</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Cao L</author>
                    <author order="2">Zhang R</author>
                    <author order="3">Liu T</author>
                    <author order="4">Sun Z</author>
                    <author order="5">Hu M</author>
                    <author order="6">Sun Y</author>
                    <author ORCID="0000-0002-9148-0550" order="7">Cheng L</author>
                    <author order="8">Guo Y</author>
                    <author order="9">Fu S</author>
                    <author order="10">Hu J</author>
                    <author order="11">Li X</author>
                    <author order="12">Yu C</author>
                    <author order="13">Wang H</author>
                    <author order="14">Chen H</author>
                    <author order="15">Li X</author>
                    <author order="16">Fry EE</author>
                    <author order="17">Stuart DI</author>
                    <author order="18">Qian P</author>
                    <author ORCID="0000-0003-2728-881X" order="19">Lou Z</author>
                    <author order="20">Rao Z</author>
                    <title>Seneca Valley virus attachment and uncoating mediated by its receptor anthrax toxin receptor 1</title>
                    <journal_abbreviation>Proc. Natl. Acad. Sci. U.S.A.</journal_abbreviation>
                    <country>US</country>
                    <volume>115</volume>
                    <first_page>13087</first_page>
                    <last_page>13092</last_page>
                    <year>2018</year>
                    <external_references type="PUBMED">30514821</external_references>
                    <external_references type="DOI">doi:10.1073/pnas.1814309115</external_references>
                    <external_references type="ISSN">1091-6490</external_references>
                    <external_references type="CSD">0040</external_references>
                    <external_references type="ASTM">PNASA6</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
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                <pdb_id>6adt</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Seneca valley virus</name>
        <supramolecule_list>
            <virus_supramolecule supramolecule_id="1">
                <name>Seneca valley virus</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>4</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <sci_species_name ncbi="390157">Seneca valley virus</sci_species_name>
                <virus_type>VIRION</virus_type>
                <virus_isolate>STRAIN</virus_isolate>
                <virus_enveloped>false</virus_enveloped>
                <virus_empty>true</virus_empty>
            </virus_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>VP1</name>
                <natural_source database="NCBI">
                    <organism ncbi="390157">Seneca valley virus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.028494023</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>STDNAETGVIEAGNTDTDFSGELAAPGSNHTNVKFLFDRSRLLNVIKVLEKDAVFPRPFPTATGTQQDDGYFCLLTPRPT
VASRPATRFGLYVSPSDSGVLANTSLDFNFYSLACFTYFRSDLEVTVVSLEPDLEFAVGWFPSGSEYQASSFVYDQLHVP
YHFTGRTPRAFASKGGKVSFVLPWNSVSSVLPVRWGGASKLSSATRGLPAHADWGTIYAFIPRPNEKKSTAVKHVAVYIR
YKNARAWCPSMLPFRSYK</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>VP3</name>
                <natural_source database="NCBI">
                    <organism ncbi="390157">Seneca valley virus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.026393938</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>GPIPTAPRENSLMFLSTTPDDTVPAYGNVRTPPVNYLPGEITDLLQLARIPTLMAFGRVPEPEPASDAYVPYVAVPTQFD
DKPLISFPITLSDPVYQNTLVGAISSNFANYRGCIQITLTFCGPMMARGKFLLSYSPPNGTQPQTLSEAMQCTYSIWDIG
LNSSWTFVIPYISPSDYRETRAITNSVYSADGWFSLHKLTKITLPPDCPQSPCILFFASAGEDYTLRLPVDCNPSYVFH</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name>VP2</name>
                <natural_source database="NCBI">
                    <organism ncbi="390157">Seneca valley virus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.029843289</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>DRVTTQTAGNTAINTQSSLGVLCAYVEDPTKSDPPSSSTDQPTTTFTAIDRWYTGRLNSWTKAVKTFSFQAVPLPGAFLS
RQGGLNGGAFTATLHRHFLMKCGWQVQVQCNLTQFHQGALLVAMVPETTLDVKPDGKAKSLQELNEEQWVEMSDDYRTGK
NMPFQSLGTYYRPPNWTWGPNFINPYQVTVFPHQILNARTSTSVDINVPYIGETPTQSSETQNSWTLLVMVLVPLDYKEG
ATTDPEITFSVRPTSPYFNGLRNRYTT</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="4">
                <name>VP4</name>
                <natural_source database="NCBI">
                    <organism ncbi="390157">Seneca valley virus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.007393874999999999</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>GNVQTTSKNDFDSRGNNGNMTFNYYANTYQNSVDFSTSSSASGAGPGNSRGGLAGLLTNFSGILNPLGYLK</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
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                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>6.0</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE-PROPANE</cryogen_name>
                    </vitrification>
                </single_particle_preparation>
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            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI ARCTICA</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON II (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">1.63</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
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                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <type>PHASE FLIPPING AND AMPLITUDE CORRECTION</type>
                </ctf_correction>
                <startup_model type_of_model="EMDB MAP"/>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">3.22</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>11096</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
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        <symmetry>
            <space_group>1</space_group>
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        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
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            <row>580</row>
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            <a units="Å">594.5</a>
            <b units="Å">594.5</b>
            <c units="Å">594.5</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
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        <axis_order>
            <fast>X</fast>
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                <source>AUTHOR</source>
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