2026-08-12 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY database_2 em_admin _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update STRUCTURE_SUMMARY em_admin entity _em_admin.last_update _entity.formula_weight STRUCTURE_SUMMARY em_admin pdbx_modification_feature pdbx_validate_close_contact struct_conn _em_admin.last_update REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond em_admin entity pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_validate_chiral pdbx_validate_close_contact struct_conn _chem_comp.formula _chem_comp.formula_weight _em_admin.last_update _entity.formula_weight PDBj PDBj 2018-08-01 2018-11-14 2018-11-14 2026-08-12 Ministry of Science and Technology (China) 2017YFC0840300 China Chinese Academy of Sciences XDB08020200 China Ministry of Science and Technology (China) 2014CB542800 China Ministry of Science and Technology (China) 2014CBA02003 China National Natural Science Foundation of China 813300237 China National Natural Science Foundation of China 81520108019 China Respiratory Complex CIII2CIV2SOD2 from Mycobacterium smegmatis Xu A Gong HR Ji WX Gao RG Wang SH Li J Wang Q Rao ZH Respiratory, Supercomplex, SOD, Mycobacterium, ETC, Lipoprotein, ELECTRON TRANSPORT Gong H Li J Xu A Tang Y Ji W Gao R Wang S Yu L Tian C Li J Yen HY Man Lam S Shui G Yang X Sun Y Li X Jia M Yang C Jiang B Lou Z Robinson CV Wong LL Guddat LW Sun F Wang Q Rao Z An electron transfer path connects subunits of a mycobacterial respiratory supercomplex. Science US 362 2018 30361386 doi:10.1126/science.aat8923 1095-9203 0038 SCIEAS 6adq FULLOVERLAP EMDB EMD-9610 associated EM volume
Respiratory Complex CIII2CIV2SOD2 from Mycobacterium smegmatis
 Superoxide dismutase in complex with bcc-aa3 type CIII-CIV supercomplex from Mycobacterium smegmatis Superoxide dismutase in complex with bcc-aa3 type CIII-CIV supercomplex from Mycobacterium smegmatis 0 1 2 3 4 5 6 7 8 9 10 11 12 Mycobacterium smegmatis MC2 51 0.8 Cytochrome c oxidase subunit 2 Mycobacterium smegmatis MC2 51 0.038077465 2 LEVO MTPRGFRVVALSIVLGGSALLLSGCSWSDALALGWPTGITPEAKLNRELWIGSVIASFAVGAIVWGLIFWTSAFHRKKAT DTELPRQFGYNMPLELTLTVIPFLIISVLFYFTVVVQERMMHKDPNPEVVIDVTAFQWNWKFGYQKIAFADGSFDYDGAD PERKEAMTSRPEGKDEHGIEKVGPIRGMTPEDRTYLNFDKIETLGTSSEIPVLVLPAGKRIEFVLNSADVIHGFWVPEFL FKRDVLPEPKANNSDNVFQVSEIQQTGAFVGRCTEMCGTFHAMMNFEVRVVEPNDFKAYIDQRNAGKTNAEALAAINQPP LAITTEPFESRRGELVPQASK A0R057 1.9.3.1 Cytochrome c oxidase subunit 1 Mycobacterium smegmatis MC2 51 0.06416296499999999 2 LEVO MVAEAPPIGELEARRPFPERMGPKGNLIYKLITTTDHKLIGIMYCVVCFAFFLVGGLMALFMRTELAMPGLQFLSNEQFN QLFTMHGTVMLLFYATPIVFGFANLVLPLQIGAPDVAFPRLNALSFWLFLFGALIAIAGFITPGGAADFGWTAYSPLTDA IHSPGAGGDLWIMGLAVGGLGTILGGVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLIAFPILTAALFGLAADRHL GAHIYDPANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLIYATLAIAALSVAVWAHHMYATGA VLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETPMLFSVGFLITFLLGGLSGVLLASPPLDFHVTDSYFVIAHFHY VLFGTIVFATYAGIYFWFPKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFTTLNVISTVG AFILGVSMLPFVWNVFKSWRYGEPVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHMVERMRAEAHV GRAHHPELETADKSS 1.9.3.1 Cytochrome c oxidase subunit 3 Mycobacterium smegmatis MC2 51 0.022196883 2 LEVO MTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQAGGAWPPEPTELNLALAVPVTLVLIAS SFTCQMGVFAAERGDVFGLRRWYVITFLMGLFFVLGQGYEYIHLVEHGTTIPGSAYGSVFYLATGFHGLHVIGGLVAFVL LLARTKMSKFTPAQATAAIVVSYYWHFVDIVWIALFATIYFVR A0R049 1.9.3.1 Cytochrome c oxidase polypeptide 4 Mycobacterium smegmatis MC2 51 0.015177424 2 LEVO MHIEARLFEILTAFFALAAVVYAVLTAMFATGGVEWAGTTALVLTTGLTLITGTFFRFVARRLDTRPEDYEDAEISDGAG ELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAFVITSVCGLVFEYYWGPEKH A0R056 1.9.3.1 Cytochrome c oxidase subunit CtaJ Mycobacterium smegmatis MC2 51 0.008365549 2 LEVO MSTALTHGLIGGVPLVLFAVLALIFLTRKGPHPDTYKMSDPWTHAPILWAAEEPREHGHGGHGHDSHGVVIGGGASGKW A0R1B6 Uncharacterized protein MSMEG_4692/MSMEI_4575 Mycobacterium smegmatis MC2 51 0.015910971 2 LEVO MASGDIATVANAELDLPYGSALTSSGRISAVTEPGELSVHYPFPTMDLVVLDDALKYGSRAAKARFAVYIGPLGADTAAT AREILANVPTPENAVLLAVSPDQRAIEVVYGADVKGRGIESAAPLGVSAAAASFKEGNLIDGLISAVRVMSAGVSPA A0R1B5 Prokaryotic respiratory supercomplex associate factor 1 PRSAF1 Mycobacterium smegmatis MC2 51 0.011329908999999999 2 LEVO MSSTQDRSQLDPEEQPVANTEVERHTGVDVEDVPSAEWGWSHMPIGVMHIGGLLSAAFLLVMMRGNHVGHVEDWFLIGFA AVIVALVGRNWWLRRRGWIR Superoxide dismutase [Cu-Zn] Mycobacterium smegmatis MC2 51 0.023232375 2 LEVO MLKPVSVAVLFATPVLALSACSPPGETASSEPGTTPAIWTGSPSPAAPSGEDHGGGHGAGAAGAGETLTAELKTADGTSV ATADFQFADGFATVTIETTTPGRLTPGFHGVHIHSVGKCEANSVAPTGGAPGDFNSAGGHFQVSGHSGHPASGDLSSLQV RADGSGKLVTTTDAFTAEDLLDGAKTAIIIHEKADNFANIPPERYQQVNGAPGPDQTTMATGDAGSRVACGVISAG A0QQQ1 1.15.1.1 LpqE protein Mycobacterium smegmatis MC2 51 0.019118969 2 LEVO MNRFSSRAGLAVCGLATAVALTACSAGQISQTTTQEPAVNGVNAQAGQVSLRNVHLRAPQQTDYVEPGTTVELLFVAAND STEGSNKLKSITSDVGEVTLTGDSTVPADGVLIVGEPDGQIQAVENAEAADAVTAEVELTKPITNGLLYDFTFTFEDGET TVAVPISAGEQPRRPVPPAGPGSSEH A0R562 Ubiquinol-cytochrome c reductase cytochrome b subunit Mycobacterium smegmatis MC2 51 0.06027498 2 LEVO MSPDFAKLAAAQGDAIDSRYHPSAAVRRQLNKVFPTHWSFLLGEIALYSFIILLLTGVWLTLFFDPSMAHVTYDGVYQPL RGVQMSRAYETALDISFEVRGGLFVRQVHHWAALMFAASIMVHLARIFFTGAFRRPREANWVIGSLLLILAMFEGFFGYS LPDDLLSGTGIRAALSGITMGIPVIGTWMHWALFGGDFPGEILIPRLYALHILLIPGIILALIGAHLALVWFQKHTQFPG PGRTETNVVGVRVMPVFAVKSGAFFAMITGVLGLMGGLLTINPIWNLGPYKPSQVSAGSQPDFYMMWTDGLIRLWPAWEF YPFGHTIPQGVWVAVGMGLVFALLIAYPFIEKKVTGDDAHHNLLQRPRDVPVRTAIGSMAIALYLLLTFACMNDIIALKF HISLNATTWIGRIGMVVLPAIVYFVAYRWAISLQRSDREVLEHGVETGIIKRLPHGAYVELHQPLGPVDEHGHPIPLEYA GAPLPKRMNKLGSGGAPGTGSFLFPDPAVEHEALTEAAHASEHKSLTALKEHQDRIHGNGETNGHH A0R052 Cytochrome bc1 complex cytochrome c subunit Mycobacterium smegmatis MC2 51 0.030857109 2 LEVO MDRAVRHHLLRPMNIGSPMSSMRRGSMTSKSRRRLRRRLSAGLLLLIGLAVAGGVAATLTPQPQVAVADESQSALLRTGK QLFETSCVSCHGANLQGVPDRGPSLIGTGEAAVYFQVSTGRMPAMRGEAQAPSKPPHFDESQIDALGAYVQANGGGPTVP RDDHGAVAQESLIGGDVARGGDLFRLNCASCHNFTGKGGALSSGKYAPDLGDANPAQIYTAMLTGPQNMPKFSDRQLTPD EKRDIVAYVRESAETPSYGGYGLGGFGPAPEGMAMWIIGMVAAIGVAMWIGSRA I7FPH1 1.10.2.2 Rieske iron-sulfur protein QcrA Mycobacterium smegmatis MC2 51 0.046383065999999994 2 LEVO MDYRNGGRHRCGHVDRIASMSQDSPDIKGTDAPGQTGVPGQPTDAELAEMSREELVKLGGKIDGVETIFKEPRWPVPGTK AEKRTERLVAYWLMLGGLSGLALLLVFLFWPWEYQPFGSEGEFLYSLATPLYGLTFGLSILSIGIGAVLFQKKFIPEEIS VQDRHDGRSPEVHRKTVAANLTDALEGSTLKRRKVIGLSLGIGLGAFGAGTLVAFIGGLIKNPWKPVVPTAEGKKAVLWT SGWTPRFKGETIYLARATGRPGESPFVKMRPEDIDAGGMETVFPWRESDGDGTTVESEHKLTEIAMGVRNPVMLIRIKPA DMHRVIKRKGQESFNFGELFAYTKVCSHLGCPSSLYEQQTYRILCPCHQSQFDALEFAKPIFGPAARALAQLPITIDEDG YLVANGDFVEPVGPAFWERKS I7GD61 COPPER (II) ION 6.354599999999999e-05 8 CU HEME-A 0.000852837 4 HEA CARDIOLIPIN 0.0014640429999999997 18 CDL (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate 0.0007179959999999999 8 9Y0 PALMITIC ACID 0.00025642399999999994 4 PLM (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate 0.0005949919999999999 4 9XX (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate 0.000853112 8 9YF PROTOPORPHYRIN IX CONTAINING FE 0.000616487 4 HEM MENAQUINONE-9 0.0007852329999999999 10 MQ9 HEME C 0.0006205189999999999 4 HEC FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 2 FES singleParticle particle 0.5 7.4 Quantifoil R1.2/1.3 COPPER 200 ETHANE 100 46.4 FEI VITROBOT MARK IV FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 50.0 1 Gctf NONE C2 3.5 FSC 0.143 CUT-OFF RELION 202215 MAXIMUM LIKELIHOOD RELION MAXIMUM LIKELIHOOD RELION emd_9610.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 292 292 292 0 0 0 292 292 292 379.59998 379.59998 379.59998 90.0 90.0 90.0 X Y Z -0.27065414 0.5625258 0.0002480549 0.016874203 1.3 1.3 1.3 0.0452 AUTHOR AB INITIO MODEL REAL emd_9610_msk_1.map emd_9610_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 292 292 292 0 0 0 292 292 292 379.59998 379.59998 379.59998 90.0 90.0 90.0 X Y Z -0.023278818 0.08513848 0.00013384472 0.0033129135 1.3 1.3 1.3 AUTHOR emd_9610_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 292 292 292 0 0 0 292 292 292 379.59998 379.59998 379.59998 90.0 90.0 90.0 X Y Z -0.022595163 0.08514086 0.00013488872 0.0033135063 1.3 1.3 1.3 AUTHOR