2020-02-12 REL PDBj PDBj PDBj 2018-07-20 2019-06-12 2019-06-12 2020-02-12 Chinese Academy of Sciences XDB08020100 China Peng Q Peng R Qi J Gao GF Shi Y Peng Q Liu Y Peng R Wang M Yang W Song H Chen Y Liu S Han M Zhang X Wang P Yan J Zhang B Qi J Deng T Gao GF Shi Y Nat Microbiol UK 2019 31209309 doi:10.1038/s41564-019-0487-5 2058-5276 EMD-9579 associated EM volume

structure of influenza D virus polymerase bound to vRNA promoter in Mode A conformation(Class A2)

6kup FULLOVERLAP Influenza D virus polymerase Influenza D virus polymerase 0 1 2 3 4 5 Influenza D virus Spodoptera frugiperda SF9 0.27 Polymerase 3 Influenza D virus 0.083036086 1 Spodoptera frugiperda LEVO MSSVIREIAKRFLEQATINIAEEVVREYGDHERTMISVGVHFQACCLISDEYTLEDETTPRYVLLEGLKRQEAISKQNNI CSTLGLEPLRNLADIFDRKTRRFLEVGITKRESDEYYQEKFNKIGNDMDIHVFTYEGKYFSNNPNGLEDIQKTRIFTFLS FVSDELRKENMFTEMYVTEEGAPELEMYKSKLFIAMRDESVPLPYINYEHLRTRCETFKRNQAECEAKVADVASRLKIKL EHLEENKLRPLEIPKEKEAPYTHKFLMKDAWFFAKPHDSERAQPQQILYDFFEAANMGFMTTSPKPIFGKQGLMYHSLWG QTKRAIKDKRNELEPSEQRDFLCGIGRASKKIQEDKWQESREEEFKQEETKGAAKRGFPTWFNEEWLWAMRDSGDGDNKI GDWIPMAEMPPCKNEMEDYAKKMCEELESKIQGTNCAREMSKLIHTIGSLHTECRNFPGKVKIVPIYCRGTLRGESTDCL FGIAIKGKSHLNKDDGMYTVVTFEFSTEEPNPSKHEKYTVFEAGTVPVEAVVLTPKRERVLKEKKLFLYCRTTGMSKLKN DWFSKCRRCLIPTMETVEQIVLKECALKEENRVSEMLENKRAWIAHENGENLTRLVSTKLKDLCRMLIVTQFYYCIYNDN QLEGFCNEQKKFLMFLQADKDSKSAFTFNQKGLYEKIEECIVSNPLCIFLADRLNKLFLVAKSNGAKYFE RNA-directed RNA polymerase catalytic subunit Influenza D virus 0.086138844 1 Spodoptera frugiperda LEVO MEINPYLLMLNNDITSMISLTYPYTGAPPMSHGTSTKYSMETVSRTYSYSRTKKEVPSGIFPIERRKFCNTIEDKENLEK PNGNVDINFMLSLAEMLEEKMGKGFFKFCANEAEAEILKMHFSKLTEGRQTYDWTSERNMPAATALQLTVDAIQETQGTF KGTTMVEYCNKILEMMDWPEVKFKKVRMIVQRHWDPKTKKEIKMKSPTLMITKIGREEFIKRICTINTMAKDGERGKYKR RAIATPGMGIRPFSKIVETLAQKICERLAESGLPVGGNEKKAKLKTTVSSTNSKLQEGQFMVNITGDNSKWNECQQPEAY LAMLAYITKDSSNLMKDLCSVAPTLFCNKYVKMGQGFRAKNKRKTKEIVIPAKKMKERKELMNAEWRDLFETIEPYMDGE CCFLGGGMLMGMFNMLSTVFGVMTLNYREEALARRNCYWTGLQSSDDFVLFCISRTWPEMEMTILKFIAVCKLMGINMSL EKSYGCLPELFEFTSMFFSGDFVSNIALELPAFTTAGMNEGTDFTAAMSVIRTNMINNGLSPGTALMALRICLQEFRATY RVHPYDSGVKNHRMKIIRKFIETIENKDGLLISDGGKLMNNISSLHIPEEILKEDLMDPSYRNRVFNPRNPFTQFEKTVD IFKASGPIRVEENEAVVSTHSFRTRSNRTLLNTDMRAMALEEKRYQVVCNMYRSVFESADVNTPIGSMSMGEAIEAKILD RARTQFENGIIGGEEYSEIKRLIEDAKRQRLSV 2.7.7.48 Polymerase PB2 Influenza D virus (D/swine/Oklahoma/1334/2011) D/swine/Oklahoma/1334/2011 0.088480484 1 Spodoptera frugiperda LEVO MSLLLTLAKEYANLTKDKKSCKLLSQGTVSSYTTFKKWTTSRKEKNPSLRMRWAMGSKFPIMANREILEEAGIPEQWEGI DLWSKKDDVSKLGMVLASPAAITYWNFCGPGVDNSSVIKDVYKAKFMKKERWRETLWGPMNFELVGKQRRVVETQPVEIK LNQKEIKELTMWVLFEDEANLASKFIQENFSLVLSLRELYKGKAVNKDVAAFMIAHQFSPEKRFLPTFGPIRPERMELLH CLGGDFWKIEAVTAGSLNEEQKKRDVRAVARKICLRASVDLFTPAEKIRDYIASVTMRFGTVERTFEDVIRNSDDISAEV TLCKAALGCELGKSMSFGNLNLRKVSGEAETMEKTVYWGLKPIKYKCWRGEETFYCELRKVTCMFRRSEGLDWANIGPGS PEERRELLAMVMIFCRDGRFFESAPVNIDESFFRTRLNKEIPYQYVLLKWVRQSRDNLDALLSTRGLIPAHIGQFGKGMG IDGSSSSSMVYKGVMLSKTPIDIVESKEKHRLFLNDNIEAVTERGAMVASIMDLSEDNRETFNDVTFNHVDLAVLKDEKT AIIKIYRSLVERINTDDDGLPALIMGKRYLELYQLDEVKDAVGLIPKRMLGAYSYQARQLIQSQIKNDSYSLPEIIKLLP FCYSPPKKMLFDGTFHFKNQMYVRPGINTNLFSFSKTDKSKIYVNGSAVKIKLVLGDDEMDTSLAFVEGFQVCEYDPRAP LIPRRDLRLIGFGKKVRVFVGQGQEKTLVRTSSKRAASHDVSKNIRRMRLEV RNA (5'-R(P*CP*UP*CP*CP*UP*GP*CP*UP*UP*AP*UP*GP*CP*U)-3') synthetic construct 0.004337563 1 CUCCUGCUUAUGCU RNA (5'-R(P*AP*GP*CP*AP*GP*UP*AP*GP*CP*AP*AP*GP*GP*AP*G)-3') synthetic construct 0.004918042 1 AGCAGUAGCAAGGAG singleParticle particle 0.8 7.5 ETHANE 100 277 FEI VITROBOT MARK IV

FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 QUANTUM (4k x 4k) SUPER-RESOLUTION 60.0 1 CTFFIND 4.1 6AB7

Influenza D virus plolymerase

4.3 FSC 0.143 CUT-OFF RELION 2.0 62457 MAXIMUM LIKELIHOOD RELION 2.0 MAXIMUM LIKELIHOOD RELION 2.0 RELION 2.0 FLEXIBLE FIT REAL