2025-06-25 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name PDBj PDBj 2016-10-27 2016-11-02 2017-01-25 2025-06-25 the National Research and Development Program of China 2016YFA0501103 China he National Research and Development Program of China 2015CB910104 China the National Natural Science Foundation of China 91530321 China the National Natural Science Foundation of China 31570727 China the National Natural Science Foundation of China 31570742 China RNA dependent RNA polymerase ,vp4,dsRNA Li X Zhou N structural classification, TRANSFERASE-RNA complex Li X Zhou N Chen W Zhu B Wang X Xu B Wang J Liu H Cheng L Near-Atomic Resolution Structure Determination of a Cypovirus Capsid and Polymerase Complex Using Cryo-EM at 200kV J. Mol. Biol. UK 429 79 87 2017 27914893 doi:10.1016/j.jmb.2016.11.025 1089-8638 0070 JMOBAK EMD-9565 other EM volume 5h0r FULLOVERLAP RNA dependent RNA polymerase ,VP4,dsRNA RNA dependent RNA polymerase ,VP4,dsRNA 0 1 2 3 4 RNA dependent RNA polymerase 1 1 VP4 1 2 dsRNA 1 3 dsRNA 1 4 RNA-dependent RNA polymerase Bombyx mori cytoplasmic polyhedrosis virus 0.13907728099999997 1 Cypovirus LEVO MLPNTKLHNTIFSETRKFTRESFKEIEHLTARLANDSVARHDFLFNTSIALISDYSGEDSNGNQLQATITIPNEIINPKE YDPSDYPLAEDESFFKQGHKYDYLVTFRAGSLTNTYEPKTKMYKLHAALDKLMHVRQRKSRFADLWRELCAVIASLDVWY QTTNYPLRTYVKLLFHRGDEFPFYESPSQDRIIFNDKSVASILPTFVYTCCQVGTAIMSGILTHVESIVAMNHFLHCAKD SYIDEKLKIKGIGRSWYQEALHNVGQATVPVWSQFNEVIGHRRKSTSEPHFVSSTFISLRAKRAELLYPEFNAYINRAIQ LSKTQNDVANYYAACRAMTNDGTFLATLTELSLDAAVFPRIEQRLVTRPAVLMSNTRHESLKQKYTNGVGSIAQSYLSSF TDEIAKRVNGIHHDEAWLNFLTTSSPGRKLTEIEKLEVGGDVAAWSNSRIVMQAVFAREYRTPERIFKSLKAPIKLVERQ QSDRRQRAISGLDNDRLFLSFMPYTIGKQIYELNDNAAQGKQAGNAFDIGEMLYWTSQRNVLLSSIDVAGMDASVTTNTK DIYNTFVLDVASKCTVPRFGPYYAKNMEVFEVGKRQSQVRYVNAAWQACALEAADSQTSTSYESEIFGQVKNAEGTYPSG RADTSTHHTVLLQGLVRGNELKRASDGKNSCLATIKILGDDIMEIFQGSESDTYDHAMSNANILNESGFATTAELSQNSI VLLQQLVVNGTFWGFADRISLWTREDTKDIGRLNLAMMELNALIDDLVFRVRRPEGLKMLGFFCGAICLRRFTLSVDNKL YDSTYNNLSKYMTLIKYDKNPDFDSTLMSLILPLAWLFMPRGGEYPAYPFERRDGTFTEDESMFTARGAYKRRLLYDVSN IREMIQQNSMALDDDLLHEYGFTGALLLIDLNILDLIDEVKKEDISPVKVSELATSLEQLGKLGEREKSRRAASDLKIRG HALSNDIVYGYGLQEKIQKSAMATKETTVQSKRVSSRLHDVIVAKTRDYKISTIPADALRLHEFEVEDVTVDLLPHAKHT SYSSLAYNMSFGSDGWFAFALLGGLDRSANLLRLDVASIRGNYHKFSYDDPVFKQGYKIYKSDATLLNDFFTAISAGPKE QGILLRAFAYYSLYGNVEYHYVLSPRQLFFLSDNPVSAERLVRIPPKYYVSTQCRALYNIFSYLHILRSIANNWGKRLKM VLHPGLIAYVRGTSQGAILPEADNV A0A0S1LIW6 VP4 protein Dendrolimus punctatus cypovirus 1 0.063734707 1 Cypovirus LEVO MFAIDPLKHPKLYEEYGLYLRPHQINQEIKPTTIKKKELAPTIRSIKYASLIHSMLAKHAARHNGTLINPRMYADMITLG NTKVTVTKGTPKAQIDTLKMNGLTVVSKSRRNNKKKPVSDTTASTDETTDDVVTYKALTEMSTLVESFRLPSGLTLIVFD DEKYQSLIPDYINQLITYTQPHIIPTWQGITDFSDTYLRSYFKRPFELTASNLAVPQKHNLSPITRSIFNNTGREDAIIR KLYGYGEYVFIKYEGCLITWTGLYGAVTMMVNLPKRDLGLDVGDDFLKEYKKLLFHGVITDAIPSGISAKSTVMRISPHK MMNPSGGALAVLSKYIEAVVSTNVINATLVVYAEKGAGKTSFLSTYAQQLSLASGQIVGHLSSDAYGRWLAKNKDVEEPS FEYDYVLSLDTDDNESYYEQKASELLTSHGISELSQYELLSVRRKVKMMNEMDEILIAQLDNANTHSERNFYYMVSTGKN TPRTLIVEGHFNAQDATIARTDTTILLRTINDTTQAMRDRQRSGVVQLFLRDTYYRLLPSLHTTVYPFEMLESIKRWKWV H Q80A92 RNA (42-MER) Cypovirus 0.013781683 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA RNA (42-MER) Cypovirus 0.012814002 1 UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU singleParticle particle 7.5 NITROGEN FEI TECNAI ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 FEI FALCON II (4k x 4k) 20.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 3.9 FSC 0.143 CUT-OFF 27000 COMMON LINE COMMON LINE emd_9564.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 700 700 700 -937 -937 -937 700 700 700 652.39996 652.39996 652.39996 90.0 90.0 90.0 X Y Z -27.507093000000001 45.616573000000002 0.6388262 4.628242 0.9319999 0.9319999 0.9319999 12.0 AUTHOR the structure of RNA-dependent RNA polymerase (RdRp) complexes within the capsid at 3.9-%u212B resolution using a 200 kV TEM